Wall clock time and date at job start Wed Apr 1 2020 04:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 F 1.39907 * 109.47370 * 2 1 4 4 F 1.39895 * 109.47423 * 240.00249 * 2 1 3 5 5 C 1.50703 * 109.47157 * 119.99911 * 2 1 3 6 6 O 1.21277 * 120.00188 * 25.00075 * 5 2 1 7 7 N 1.34784 * 119.99673 * 205.00081 * 5 2 1 8 8 C 1.47151 * 125.60319 * 0.02562 * 7 5 2 9 9 C 1.54622 * 107.34170 * 179.08469 * 8 7 5 10 10 C 1.53477 * 102.74825 * 339.33606 * 9 8 7 11 11 C 1.53484 * 111.79782 * 154.33810 * 10 9 8 12 12 C 1.55210 * 101.46651 * 88.12440 * 11 10 9 13 13 N 1.47993 * 104.98812 * 35.39876 * 12 11 10 14 14 C 1.46906 * 110.99656 * 213.97019 * 13 12 11 15 15 C 1.50701 * 109.46965 * 290.77606 * 14 13 12 16 16 O 1.21289 * 120.00042 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99669 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00007 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99870 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00222 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99914 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99972 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47398 * 60.00408 * 22 20 18 24 24 H 1.48506 * 109.47178 * 180.02562 * 22 20 18 25 25 H 1.48511 * 109.47258 * 300.00238 * 22 20 18 26 26 C 1.47858 * 108.51454 * 336.20157 * 13 12 11 27 27 C 1.47755 * 125.59407 * 180.02562 * 7 5 2 28 28 H 1.09000 * 109.47646 * 300.00066 * 1 2 3 29 29 H 1.09007 * 109.47339 * 60.00094 * 1 2 3 30 30 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.86735 * 59.64265 * 8 7 5 32 32 H 1.08996 * 109.86934 * 298.52430 * 8 7 5 33 33 H 1.09003 * 110.75457 * 221.02514 * 9 8 7 34 34 H 1.08997 * 110.75744 * 97.65409 * 9 8 7 35 35 H 1.08999 * 111.03112 * 206.17254 * 11 10 9 36 36 H 1.08997 * 111.02640 * 330.04010 * 11 10 9 37 37 H 1.08997 * 110.33515 * 276.51769 * 12 11 10 38 38 H 1.09001 * 110.33558 * 154.27685 * 12 11 10 39 39 H 1.08993 * 109.47164 * 50.77549 * 14 13 12 40 40 H 1.08996 * 109.46920 * 170.77583 * 14 13 12 41 41 H 0.97001 * 120.00106 * 359.97438 * 17 15 14 42 42 H 0.96999 * 120.00026 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.99991 * 121.46597 * 26 13 12 44 44 H 1.09002 * 110.00227 * 242.77289 * 26 13 12 45 45 H 1.09000 * 110.39255 * 83.55010 * 27 7 5 46 46 H 1.09005 * 110.39415 * 321.14992 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1422 5 6 2.0322 -0.7104 1.2305 6 8 1.3370 -1.5393 1.7785 7 7 3.2543 -0.4245 1.7220 8 6 4.1965 0.5554 1.1585 9 6 5.4513 0.5605 2.0620 10 6 4.9255 -0.0349 3.3752 11 6 6.0438 -0.7049 4.1853 12 6 6.5778 0.4893 5.0205 13 7 5.3828 1.3069 5.3267 14 6 5.7182 2.7367 5.3625 15 6 6.5804 3.0203 6.5656 16 8 6.8858 2.1200 7.3187 17 7 7.0121 4.2746 6.8046 18 6 7.7960 4.5328 7.8993 19 1 8.0680 3.7310 8.5699 20 6 8.2416 5.8257 8.1454 21 7 7.9112 6.8010 7.3292 22 14 9.3103 6.1773 9.6366 23 1 10.5588 5.3780 9.5504 24 1 9.6489 7.6227 9.6732 25 1 8.5722 5.8108 10.8721 26 6 4.3503 1.0303 4.3051 27 6 3.8678 -1.0435 2.9151 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.7410 1.5456 1.1513 32 1 4.4712 0.2645 0.1446 33 1 5.8121 1.5775 2.2162 34 1 6.2345 -0.0684 1.6389 35 1 5.6443 -1.4865 4.8315 36 1 6.8185 -1.1013 3.5289 37 1 7.2941 1.0687 4.4380 38 1 7.0382 0.1317 5.9414 39 1 6.2600 3.0056 4.4558 40 1 4.8019 3.3234 5.4258 41 1 6.7682 4.9945 6.2020 42 1 8.2219 7.7036 7.5012 43 1 3.4436 0.6584 4.7824 44 1 4.1299 1.9376 3.7426 45 1 4.3363 -1.9920 2.6524 46 1 3.1194 -1.1912 3.6937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499589332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:47 Heat of formation + Delta-G solvation = -149.907299 kcal Electronic energy + Delta-G solvation = -31134.641367 eV Core-core repulsion = 26502.376068 eV Total energy + Delta-G solvation = -4632.265300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.66893 -47.65577 -40.99443 -39.42813 -38.10969 -36.47755 -33.92372 -32.69196 -31.97035 -31.22250 -30.42040 -29.34595 -27.65557 -26.11792 -24.62510 -23.58141 -23.17901 -21.28250 -20.56340 -19.72782 -19.17003 -18.30782 -18.14259 -17.83729 -17.15296 -16.33008 -16.18065 -16.08855 -15.45661 -15.16892 -14.72089 -14.52435 -14.45074 -14.29552 -14.20059 -13.96838 -13.86928 -13.56865 -13.50428 -13.15785 -13.09012 -12.89750 -12.81124 -12.58094 -12.45603 -12.38838 -12.08086 -11.77058 -11.72071 -11.48122 -11.20846 -10.99052 -10.95722 -10.91407 -10.59348 -10.44114 -10.38649 -10.20978 -9.48227 -9.18769 -8.45360 -7.97023 -7.87967 -6.41221 -3.81935 1.70041 2.06375 3.15975 3.20093 3.25709 3.30029 3.41148 3.83178 3.91224 3.95814 4.06858 4.11181 4.15348 4.22229 4.35123 4.76096 4.82605 4.90847 4.93980 5.06595 5.08539 5.18594 5.23563 5.30658 5.32328 5.38105 5.41530 5.42398 5.45427 5.61232 5.68675 5.70395 5.79038 5.84396 5.91010 5.97706 6.13205 6.28754 6.43766 6.80044 7.21736 7.23325 7.29102 7.55345 8.06654 8.62703 9.18863 9.55264 10.07419 10.76612 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.002148 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.375150 B =13031.832709 C =13619.610471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.285 3.715 3 F -0.186 7.186 4 F -0.183 7.183 5 C 0.499 3.501 6 O -0.505 6.505 7 N -0.600 5.600 8 C 0.089 3.911 9 C -0.118 4.118 10 C -0.094 4.094 11 C -0.114 4.114 12 C 0.055 3.945 13 N -0.503 5.503 14 C 0.041 3.959 15 C 0.445 3.555 16 O -0.577 6.577 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.058 3.942 27 C 0.123 3.877 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.391 0.609 42 H 0.272 0.728 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.864 -11.964 -18.448 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.245 3.755 3 F -0.167 7.167 4 F -0.164 7.164 5 C 0.282 3.718 6 O -0.380 6.380 7 N -0.333 5.333 8 C -0.033 4.033 9 C -0.156 4.156 10 C -0.096 4.096 11 C -0.152 4.152 12 C -0.073 4.073 13 N -0.227 5.227 14 C -0.091 4.091 15 C 0.230 3.770 16 O -0.461 6.461 17 N -0.203 5.203 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.070 4.070 27 C 0.001 3.999 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.212 -12.922 -17.185 24.249 hybrid contribution 0.851 1.234 -0.709 1.658 sum -10.361 -11.688 -17.895 23.753 Atomic orbital electron populations 1.22643 0.88606 1.06836 1.05892 1.21322 0.95824 0.75638 0.82670 1.93050 1.90311 1.36765 1.96570 1.93084 1.90556 1.80811 1.51922 1.20377 0.81344 0.84134 0.85914 1.90793 1.55292 1.32804 1.59073 1.48641 1.14851 1.40539 1.29277 1.22509 0.89878 0.93198 0.97714 1.22577 0.96288 1.02922 0.93809 1.21855 0.95973 0.96331 0.95458 1.22555 0.96274 0.98445 0.97959 1.23090 0.91795 0.92667 0.99714 1.63436 1.09076 1.05172 1.45033 1.22113 0.99961 0.89500 0.97497 1.19729 0.85266 0.83848 0.88183 1.90507 1.60977 1.44744 1.49828 1.41859 1.45664 1.07453 1.25347 1.19639 1.25609 0.94634 1.02881 0.88007 1.25248 0.98498 0.95211 0.99008 1.69599 1.46103 1.01193 1.37581 0.85929 0.80051 0.77083 0.81215 1.19942 1.21006 1.19895 1.22681 0.96246 0.96821 0.91212 1.22203 0.95181 0.95837 0.86677 0.88652 0.88992 0.88030 0.89515 0.90762 0.89351 0.89818 0.90091 0.90469 0.93894 0.88651 0.93448 0.89501 0.77558 0.91855 0.90279 0.92525 0.90384 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 8.92 37.15 0.33 -0.86 16 2 C 0.29 2.53 2.22 -27.89 -0.06 2.47 16 3 F -0.19 -1.66 14.17 2.25 0.03 -1.63 16 4 F -0.18 -1.75 17.05 2.25 0.04 -1.71 16 5 C 0.50 5.40 7.29 -10.98 -0.08 5.32 16 6 O -0.50 -6.69 16.38 5.56 0.09 -6.60 16 7 N -0.60 -5.88 3.34 -171.01 -0.57 -6.45 16 8 C 0.09 0.73 5.75 -2.83 -0.02 0.71 16 9 C -0.12 -0.96 5.79 -25.63 -0.15 -1.11 16 10 C -0.09 -0.91 0.61 -154.08 -0.09 -1.01 16 11 C -0.11 -1.18 6.05 -25.31 -0.15 -1.33 16 12 C 0.05 0.80 5.72 -2.05 -0.01 0.79 16 13 N -0.50 -7.97 4.88 -233.07 -1.14 -9.10 16 14 C 0.04 0.71 5.06 -4.97 -0.03 0.68 16 15 C 0.44 10.33 7.58 -10.98 -0.08 10.25 16 16 O -0.58 -15.37 14.62 5.55 0.08 -15.29 16 17 N -0.57 -14.21 5.29 -10.96 -0.06 -14.27 16 18 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 19 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 22 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.06 0.70 6.05 -3.47 -0.02 0.68 16 27 C 0.12 1.17 5.91 -3.24 -0.02 1.15 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.10 0.66 7.87 -51.93 -0.41 0.26 16 31 H 0.09 0.71 6.65 -51.93 -0.35 0.36 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.74 7.94 -51.93 -0.41 0.33 16 34 H 0.08 0.59 7.80 -51.93 -0.40 0.19 16 35 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.08 0.66 7.76 -51.93 -0.40 0.26 16 37 H 0.04 0.63 7.62 -51.93 -0.40 0.23 16 38 H 0.10 1.67 7.39 -51.93 -0.38 1.29 16 39 H 0.05 0.73 7.85 -51.93 -0.41 0.33 16 40 H 0.09 1.39 8.05 -51.93 -0.42 0.97 16 41 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.08 0.98 7.58 -51.93 -0.39 0.59 16 44 H 0.06 0.64 7.22 -51.93 -0.37 0.27 16 45 H 0.08 0.68 8.05 -51.93 -0.42 0.27 16 46 H 0.09 0.93 7.60 -51.93 -0.39 0.53 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -32.35 377.03 -7.45 -39.79 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.68 Total: 7.52 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -0.62 Total: 9.83 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -1.04 Total: -53.56 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.17 Total: -21.89 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.34 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.35 -7.45 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499589332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.113 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds