Wall clock time and date at job start Wed Apr 1 2020 02:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34786 * 120.00125 * 2 1 4 4 O 1.21276 * 119.99781 * 174.94134 * 3 2 1 5 5 C 1.50692 * 119.99776 * 354.94158 * 3 2 1 6 6 C 1.53000 * 115.54777 * 83.90907 * 5 3 2 7 7 C 1.52990 * 109.47327 * 27.87937 * 6 5 3 8 8 F 1.39908 * 109.47071 * 147.87672 * 6 5 3 9 9 F 1.39901 * 109.47328 * 267.87703 * 6 5 3 10 10 C 1.53001 * 117.52018 * 229.60872 * 5 3 2 11 11 C 1.53003 * 60.00073 * 107.48718 * 10 5 3 12 12 C 1.46502 * 120.00265 * 180.02562 * 2 1 3 13 13 C 1.53930 * 113.73106 * 36.72205 * 12 2 1 14 14 N 1.47960 * 86.18159 * 221.92643 * 13 12 2 15 15 C 1.46899 * 111.00364 * 137.58503 * 14 13 12 16 16 C 1.50704 * 109.46843 * 70.63905 * 15 14 13 17 17 O 1.21282 * 120.00260 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99264 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99410 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00624 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00013 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99826 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00051 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47196 * 59.99902 * 23 21 19 25 25 H 1.48502 * 109.46806 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46993 * 299.99586 * 23 21 19 27 27 C 1.47956 * 90.76238 * 24.68666 * 14 13 12 28 28 H 1.08996 * 109.47507 * 85.20542 * 1 2 3 29 29 H 1.08995 * 109.47227 * 205.21212 * 1 2 3 30 30 H 1.09004 * 109.47113 * 325.20763 * 1 2 3 31 31 H 1.09001 * 109.47425 * 51.99079 * 7 6 5 32 32 H 1.09003 * 109.47578 * 171.99174 * 7 6 5 33 33 H 1.09004 * 109.47132 * 291.99410 * 7 6 5 34 34 H 1.09005 * 117.49987 * 214.97005 * 10 5 3 35 35 H 1.09000 * 117.49879 * 359.97438 * 10 5 3 36 36 H 1.09002 * 117.49670 * 252.51547 * 11 10 5 37 37 H 1.08999 * 117.52296 * 107.48458 * 11 10 5 38 38 H 1.09002 * 112.94089 * 168.43041 * 12 2 1 39 39 H 1.09000 * 113.76388 * 336.24433 * 13 12 2 40 40 H 1.09001 * 113.76096 * 107.60919 * 13 12 2 41 41 H 1.09001 * 109.47162 * 190.63909 * 15 14 13 42 42 H 1.08996 * 109.46846 * 310.64031 * 15 14 13 43 43 H 0.96994 * 120.00871 * 0.02562 * 18 16 15 44 44 H 0.97001 * 120.00161 * 180.02562 * 22 21 19 45 45 H 1.08991 * 113.76167 * 220.99023 * 27 14 13 46 46 H 1.09008 * 113.75108 * 89.63031 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3481 1.1692 0.0926 5 6 1.3898 2.4697 -0.1151 6 6 0.8304 3.0272 1.1954 7 6 1.6978 2.5528 2.3629 8 9 0.8368 4.4254 1.1478 9 9 -0.4807 2.5726 1.3736 10 6 1.8773 3.4757 -1.1597 11 6 0.5748 2.7061 -1.3882 12 6 2.1975 -1.2687 -0.0006 13 6 1.5291 -2.3696 -0.8436 14 7 1.8707 -3.2881 0.2649 15 6 0.7554 -4.1983 0.5572 16 6 0.6094 -5.1911 -0.5672 17 8 1.3608 -5.1453 -1.5181 18 7 -0.3557 -6.1306 -0.5153 19 6 -0.4889 -7.0335 -1.5384 20 1 0.1797 -6.9922 -2.3856 21 6 -1.4841 -8.0018 -1.4854 22 7 -2.2972 -8.0524 -0.4543 23 14 -1.6651 -9.2324 -2.8790 24 1 -0.4103 -10.0148 -3.0146 25 1 -2.7923 -10.1529 -2.5831 26 1 -1.9365 -8.5083 -4.1466 27 6 1.8972 -2.1580 1.2195 28 1 -0.3634 0.0859 -1.0240 29 1 -0.3633 -0.9297 0.4377 30 1 -0.3633 0.8440 0.5864 31 1 2.7430 2.7828 2.1561 32 1 1.3877 3.0611 3.2760 33 1 1.5807 1.4764 2.4886 34 1 1.7994 4.5347 -0.9134 35 1 2.7403 3.1957 -1.7638 36 1 0.5808 1.9195 -2.1428 37 1 -0.3600 3.2583 -1.2922 38 1 3.2616 -1.1448 -0.2018 39 1 0.4573 -2.2274 -0.9816 40 1 2.0532 -2.5897 -1.7737 41 1 0.9545 -4.7299 1.4877 42 1 -0.1657 -3.6240 0.6567 43 1 -0.9564 -6.1675 0.2453 44 1 -2.9918 -8.7285 -0.4171 45 1 2.7152 -2.2090 1.9378 46 1 0.9329 -1.9539 1.6850 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569499782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:00 Heat of formation + Delta-G solvation = -90.746643 kcal Electronic energy + Delta-G solvation = -31344.510449 eV Core-core repulsion = 26714.810548 eV Total energy + Delta-G solvation = -4629.699901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.53752 -47.51201 -41.02902 -39.63136 -37.80563 -36.85618 -35.11886 -33.91501 -31.92139 -31.33006 -30.06724 -27.29140 -26.21046 -25.95539 -25.03984 -23.98855 -23.04313 -22.48619 -19.90717 -19.32937 -19.01629 -18.25965 -17.92291 -17.89387 -17.03846 -16.81857 -16.22701 -16.15408 -15.64211 -15.13756 -15.06006 -14.60589 -14.52268 -14.25676 -14.05876 -14.01751 -13.81124 -13.65728 -13.26069 -13.04004 -12.98988 -12.89715 -12.66239 -12.59596 -12.24424 -12.13827 -12.09561 -11.98148 -11.80542 -11.54330 -11.21260 -11.11447 -10.99491 -10.93200 -10.65036 -10.46810 -10.24670 -10.11885 -9.53177 -8.88948 -8.75992 -8.29963 -8.00349 -6.45186 -3.86159 2.04787 2.46026 2.90641 3.17482 3.20609 3.23573 3.27894 3.61835 3.68975 3.84441 3.94558 4.05835 4.07768 4.19520 4.40589 4.42330 4.50327 4.72456 4.86964 4.92133 4.99442 5.08629 5.10510 5.15516 5.20485 5.22365 5.26165 5.37492 5.38373 5.46271 5.51934 5.56961 5.61865 5.68615 5.73975 5.89364 6.09996 6.19367 6.25604 6.52166 7.00273 7.11117 7.51652 7.77189 8.01541 8.57256 9.14177 9.49798 10.01349 10.72449 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.002197 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.725688 B =12739.343594 C =12902.422028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.595 5.595 3 C 0.560 3.440 4 O -0.523 6.523 5 C -0.223 4.223 6 C 0.336 3.664 7 C -0.196 4.196 8 F -0.191 7.191 9 F -0.189 7.189 10 C -0.124 4.124 11 C -0.144 4.144 12 C 0.112 3.888 13 C 0.014 3.986 14 N -0.447 5.447 15 C 0.013 3.987 16 C 0.442 3.558 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.013 4.013 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.095 0.905 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 23.914 5.414 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.327 5.327 3 C 0.346 3.654 4 O -0.398 6.398 5 C -0.227 4.227 6 C 0.300 3.700 7 C -0.253 4.253 8 F -0.171 7.171 9 F -0.170 7.170 10 C -0.161 4.161 11 C -0.181 4.181 12 C 0.009 3.991 13 C -0.116 4.116 14 N -0.170 5.170 15 C -0.119 4.119 16 C 0.228 3.772 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.143 4.143 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.113 0.887 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.960 23.346 4.816 24.164 hybrid contribution -1.728 -0.373 0.055 1.769 sum 2.232 22.973 4.871 23.590 Atomic orbital electron populations 1.22208 0.78970 1.04521 1.03029 1.47884 1.07305 1.05379 1.72182 1.18946 0.86914 0.83264 0.76234 1.90726 1.13542 1.86814 1.48764 1.22424 1.08835 0.99140 0.92273 1.19958 0.79518 0.75400 0.95132 1.22825 1.01600 1.04165 0.96747 1.93013 1.96579 1.30253 1.97295 1.92937 1.39704 1.88086 1.96228 1.23156 0.98689 0.97234 0.97012 1.23203 0.96523 1.03277 0.95141 1.23333 0.98704 0.80410 0.96703 1.24265 1.00024 0.89442 0.97845 1.68373 1.37112 1.08467 1.03053 1.22452 0.93060 0.96474 0.99904 1.19647 0.84269 0.84663 0.88656 1.90525 1.45502 1.74662 1.35529 1.41858 1.29055 1.27575 1.21510 1.19648 1.14956 1.07885 1.00453 0.87978 1.25261 0.95853 0.98601 0.98156 1.69599 1.19175 1.35862 1.29683 0.85918 0.77874 0.79798 0.80647 1.19852 1.20950 1.19907 1.24512 1.02071 0.91097 0.96654 0.91943 0.90566 0.89336 0.88340 0.89396 0.89214 0.86567 0.86924 0.86989 0.87025 0.85324 0.90942 0.88072 0.88939 0.92906 0.77502 0.91784 0.88703 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 8.11 59.84 0.49 0.97 16 2 N -0.60 -6.33 3.09 -175.29 -0.54 -6.87 16 3 C 0.56 6.27 5.06 -10.98 -0.06 6.22 16 4 O -0.52 -7.44 16.44 5.56 0.09 -7.35 16 5 C -0.22 -1.97 1.14 -155.66 -0.18 -2.15 16 6 C 0.34 2.90 2.17 -26.74 -0.06 2.84 16 7 C -0.20 -1.53 8.41 37.15 0.31 -1.22 16 8 F -0.19 -1.73 15.62 2.25 0.04 -1.70 16 9 F -0.19 -1.69 14.26 2.25 0.03 -1.66 16 10 C -0.12 -0.93 9.58 -26.73 -0.26 -1.19 16 11 C -0.14 -1.02 8.75 -26.73 -0.23 -1.26 16 12 C 0.11 1.39 4.37 -69.63 -0.30 1.09 16 13 C 0.01 0.20 6.15 -2.77 -0.02 0.19 16 14 N -0.45 -7.22 5.95 -239.91 -1.43 -8.65 16 15 C 0.01 0.23 5.31 -4.97 -0.03 0.20 16 16 C 0.44 10.26 7.59 -10.98 -0.08 10.18 16 17 O -0.58 -15.45 15.13 5.56 0.08 -15.37 16 18 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 23 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C -0.01 -0.16 7.48 -2.77 -0.02 -0.18 16 28 H 0.06 0.51 7.79 -51.93 -0.40 0.10 16 29 H 0.08 0.67 6.18 -51.93 -0.32 0.35 16 30 H 0.09 0.72 4.27 -51.93 -0.22 0.50 16 31 H 0.10 0.82 7.98 -51.93 -0.41 0.40 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.72 7.59 -51.93 -0.39 0.33 16 34 H 0.12 0.76 7.18 -51.93 -0.37 0.39 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 0.77 7.97 -51.93 -0.41 0.36 16 37 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.13 1.77 7.28 -51.93 -0.38 1.39 16 39 H 0.07 1.03 6.24 -51.93 -0.32 0.71 16 40 H 0.10 1.71 8.09 -51.93 -0.42 1.29 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.05 0.79 7.69 -51.93 -0.40 0.39 16 43 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.07 0.76 6.69 -51.92 -0.35 0.42 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -32.29 378.03 -7.42 -39.71 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.36 Total: 10.17 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -0.68 Total: 7.79 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -1.30 Total: -53.14 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.18 Total: -22.72 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.07 Total: -3.36 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.29 -7.42 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569499782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.033 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds