Wall clock time and date at job start Wed Apr 1 2020 03:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46971 * 2 1 4 4 N 1.46497 * 109.47169 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00124 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99802 * 0.02562 * 5 4 3 7 7 C 1.38818 * 119.99832 * 179.97438 * 5 4 3 8 8 N 1.31619 * 119.99999 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99806 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47256 * 90.00225 * 9 7 5 11 11 H 1.48497 * 109.47055 * 210.00622 * 9 7 5 12 12 H 1.48508 * 109.47063 * 330.00179 * 9 7 5 13 13 N 1.46500 * 109.47103 * 119.99842 * 2 1 3 14 14 C 1.34770 * 120.00345 * 294.98543 * 13 2 1 15 15 O 1.21629 * 120.00117 * 5.18806 * 14 13 2 16 16 C 1.47310 * 120.00016 * 185.17707 * 14 13 2 17 17 C 1.37824 * 126.53047 * 359.69707 * 16 14 13 18 18 N 1.34782 * 108.25856 * 179.86367 * 17 16 14 19 19 H 0.96990 * 125.36892 * 180.18423 * 18 17 16 20 20 C 1.37314 * 109.26275 * 0.40201 * 18 17 16 21 21 C 1.48008 * 125.76124 * 179.77071 * 20 18 17 22 22 N 1.34168 * 126.69683 * 179.65687 * 21 20 18 23 23 N 1.28983 * 107.25331 * 179.87279 * 22 21 20 24 24 N 1.28723 * 108.98845 * 0.39976 * 23 22 21 25 25 H 0.96991 * 125.32701 * 179.76897 * 24 23 22 26 26 N 1.28877 * 109.35001 * 359.74796 * 24 23 22 27 27 C 1.35697 * 108.47527 * 359.74954 * 20 18 17 28 28 C 1.53003 * 109.47102 * 240.00354 * 2 1 3 29 29 C 1.53000 * 117.49703 * 294.04129 * 28 2 1 30 30 C 1.53002 * 117.49650 * 225.41961 * 28 2 1 31 31 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47262 * 299.99682 * 1 2 3 33 33 H 1.09001 * 109.47508 * 60.00003 * 1 2 3 34 34 H 1.08998 * 109.47335 * 299.99920 * 3 2 1 35 35 H 1.09006 * 109.46699 * 60.00293 * 3 2 1 36 36 H 0.97003 * 120.00298 * 0.02562 * 4 3 2 37 37 H 0.97005 * 119.99560 * 179.97438 * 8 7 5 38 38 H 0.97005 * 119.99503 * 114.99049 * 13 2 1 39 39 H 1.07998 * 125.87059 * 359.97324 * 17 16 14 40 40 H 1.08004 * 126.47176 * 179.97438 * 27 20 18 41 41 H 1.09000 * 115.56192 * 79.73478 * 28 2 1 42 42 H 1.08994 * 117.50024 * 145.02673 * 29 28 2 43 43 H 1.09001 * 117.49899 * 0.02562 * 29 28 2 44 44 H 1.09006 * 117.49997 * 359.97438 * 30 28 2 45 45 H 1.08995 * 117.50265 * 214.97959 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1896 2.6285 0.0002 6 1 3.6495 3.5638 -0.0002 7 6 5.5777 2.6285 0.0013 8 7 6.2358 1.4886 0.0023 9 14 6.5117 4.2463 0.0015 10 1 6.7581 4.6755 1.4015 11 1 7.8097 4.0685 -0.6976 12 1 5.7096 5.2810 -0.6996 13 7 2.0183 -0.6906 1.1962 14 6 1.7781 -0.1742 2.4177 15 8 1.0767 0.8126 2.5336 16 6 2.3650 -0.8052 3.6124 17 6 3.1698 -1.9238 3.6379 18 7 3.4998 -2.1775 4.9198 19 1 4.0617 -2.9085 5.2208 20 6 2.9111 -1.2407 5.7331 21 6 3.0279 -1.1792 7.2072 22 7 2.4668 -0.2699 8.0187 23 7 2.8097 -0.5706 9.2252 24 7 3.5614 -1.6152 9.1990 25 1 3.9549 -2.0426 9.9757 26 7 3.7089 -2.0047 7.9794 27 6 2.2046 -0.3806 4.9569 28 6 2.0399 -0.7212 -1.2493 29 6 1.7541 -2.2197 -1.3661 30 6 3.1736 -1.7326 -1.0678 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8901 36 1 3.9900 0.6026 0.0006 37 1 7.2059 1.4887 0.0027 38 1 2.5146 -1.5195 1.1090 39 1 3.4835 -2.4974 2.7783 40 1 1.6285 0.4669 5.2980 41 1 2.0315 -0.1341 -2.1677 42 1 1.5577 -2.6186 -2.3612 43 1 1.2024 -2.6917 -0.5531 44 1 3.5563 -1.8839 -0.0584 45 1 3.9109 -1.8110 -1.8667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575069561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:12 Heat of formation + Delta-G solvation = 185.565079 kcal Electronic energy + Delta-G solvation = -30273.523574 eV Core-core repulsion = 26138.787385 eV Total energy + Delta-G solvation = -4134.736188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.65808 -41.36520 -39.75900 -37.29601 -34.59836 -34.38958 -33.59373 -33.17554 -31.78920 -30.92442 -29.90750 -28.92655 -25.60317 -24.80901 -24.23444 -23.44965 -22.72535 -22.04097 -21.89114 -20.85967 -19.71950 -19.45389 -18.74871 -18.25041 -17.37582 -16.94448 -16.51036 -15.36946 -14.93949 -14.80560 -14.66746 -14.38703 -14.14588 -13.94827 -13.84036 -13.35969 -13.28453 -13.22132 -12.52027 -12.49101 -12.27866 -12.23626 -12.04060 -11.63786 -11.58297 -11.37960 -11.34668 -11.19771 -11.17999 -10.79797 -10.72431 -10.63385 -10.04349 -9.84042 -9.80745 -9.52609 -9.24776 -9.00663 -8.66476 -8.40836 -8.19086 -6.70171 -5.63251 -2.87372 0.72631 1.27668 1.96247 1.97161 2.72923 2.81805 3.45619 3.52593 3.57801 3.59164 3.75113 4.01439 4.12009 4.15438 4.72310 4.88348 4.89325 5.02526 5.08153 5.18823 5.19714 5.22407 5.35160 5.47714 5.71586 5.76546 5.79908 5.84800 5.96387 6.05341 6.07059 6.10648 6.25685 6.30402 6.36878 6.46230 6.49773 6.56914 6.70216 6.71465 6.74492 7.06437 7.18442 7.29367 7.85385 7.91769 8.08373 8.57340 8.85591 9.69232 10.29663 10.66840 11.60164 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.003422 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.248465 B = 8180.357844 C = 9996.464021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.202 3.798 3 C 0.140 3.860 4 N -0.724 5.724 5 C -0.224 4.224 6 H 0.068 0.932 7 C -0.017 4.017 8 N -0.937 5.937 9 Si 0.902 3.098 10 H -0.292 1.292 11 H -0.294 1.294 12 H -0.283 1.283 13 N -0.715 5.715 14 C 0.597 3.403 15 O -0.532 6.532 16 C -0.211 4.211 17 C 0.073 3.927 18 N -0.525 5.525 19 H 0.423 0.577 20 C 0.049 3.951 21 C 0.259 3.741 22 N -0.256 5.256 23 N -0.046 5.046 24 N -0.228 5.228 25 H 0.475 0.525 26 N -0.313 5.313 27 C -0.055 4.055 28 C -0.136 4.136 29 C -0.190 4.190 30 C -0.168 4.168 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.021 0.979 35 H 0.052 0.948 36 H 0.384 0.616 37 H 0.250 0.750 38 H 0.391 0.609 39 H 0.181 0.819 40 H 0.159 0.841 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 -16.002 10.928 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.116 3.884 3 C 0.011 3.989 4 N -0.368 5.368 5 C -0.356 4.356 6 H 0.086 0.914 7 C -0.212 4.212 8 N -0.587 5.587 9 Si 0.734 3.266 10 H -0.220 1.220 11 H -0.220 1.220 12 H -0.209 1.209 13 N -0.369 5.369 14 C 0.385 3.615 15 O -0.409 6.409 16 C -0.221 4.221 17 C -0.068 4.068 18 N -0.119 5.119 19 H 0.261 0.739 20 C -0.063 4.063 21 C -0.020 4.020 22 N -0.129 5.129 23 N -0.041 5.041 24 N -0.074 5.074 25 H 0.329 0.671 26 N -0.165 5.165 27 C -0.083 4.083 28 C -0.154 4.154 29 C -0.227 4.227 30 C -0.206 4.206 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.218 0.782 37 H 0.060 0.940 38 H 0.228 0.772 39 H 0.198 0.802 40 H 0.177 0.823 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.800 -14.941 11.690 20.511 hybrid contribution 1.986 -0.611 0.144 2.083 sum -5.814 -15.551 11.833 20.388 Atomic orbital electron populations 1.22097 0.94336 1.01570 1.03221 1.20032 0.93175 0.93191 0.81955 1.21139 0.86588 0.91635 0.99494 1.42210 0.99159 1.06216 1.89229 1.19263 0.89021 0.86339 1.40970 0.91448 1.24625 0.96261 0.96491 1.03822 1.69652 1.06350 1.23643 1.59034 0.86247 0.79395 0.83550 0.77427 1.21986 1.22048 1.20883 1.45978 1.58309 1.27250 1.05331 1.17106 0.79621 0.82969 0.81845 1.90709 1.38375 1.25654 1.86208 1.19757 1.07995 0.99958 0.94372 1.22403 0.99248 0.98810 0.86333 1.41430 1.39739 1.24773 1.05955 0.73941 1.16346 1.08441 0.98025 0.83520 1.22513 0.95150 0.90180 0.94178 1.76198 1.20729 1.21720 0.94276 1.78950 1.06309 1.01688 1.17164 1.47606 1.32829 1.19330 1.07644 0.67122 1.74937 1.24470 1.25923 0.91189 1.20996 0.98514 0.98387 0.90434 1.22417 1.02820 0.90817 0.99367 1.23023 0.99632 0.97488 1.02519 1.22886 0.91431 1.03410 1.02841 0.93029 0.90485 0.92050 0.96131 0.93051 0.78157 0.93977 0.77223 0.80170 0.82300 0.86688 0.89088 0.89140 0.88936 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.37 37.15 0.31 -1.96 16 2 C 0.20 3.36 0.52 -131.82 -0.07 3.29 16 3 C 0.14 3.03 4.89 -4.04 -0.02 3.01 16 4 N -0.72 -18.51 5.22 -59.90 -0.31 -18.82 16 5 C -0.22 -6.49 9.99 -15.06 -0.15 -6.64 16 6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 7 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 8 N -0.94 -28.24 13.06 55.49 0.72 -27.51 16 9 Si 0.90 23.23 29.55 -169.99 -5.02 18.21 16 10 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 11 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.71 -11.19 4.48 -48.70 -0.22 -11.40 16 14 C 0.60 10.62 7.22 -12.57 -0.09 10.53 16 15 O -0.53 -11.22 13.16 5.25 0.07 -11.15 16 16 C -0.21 -3.20 6.14 -104.96 -0.64 -3.84 16 17 C 0.07 0.82 11.44 -16.41 -0.19 0.63 16 18 N -0.52 -5.36 6.01 -9.19 -0.06 -5.42 16 19 H 0.42 3.03 8.96 -40.82 -0.37 2.67 16 20 C 0.05 0.63 7.08 -82.31 -0.58 0.05 16 21 C 0.26 3.27 8.20 -156.27 -1.28 1.99 16 22 N -0.26 -3.46 12.52 32.09 0.40 -3.06 16 23 N -0.05 -0.50 13.46 60.35 0.81 0.32 16 24 N -0.23 -1.76 7.90 60.35 0.48 -1.29 16 25 H 0.47 1.23 8.96 -340.35 -3.05 -1.82 16 26 N -0.31 -3.16 12.41 32.11 0.40 -2.76 16 27 C -0.06 -0.83 10.59 -39.09 -0.41 -1.25 16 28 C -0.14 -2.02 4.48 -90.62 -0.41 -2.43 16 29 C -0.19 -2.18 9.53 -26.73 -0.25 -2.43 16 30 C -0.17 -2.33 8.98 -26.73 -0.24 -2.57 16 31 H 0.05 0.66 7.71 -51.93 -0.40 0.26 16 32 H 0.08 1.29 6.36 -51.93 -0.33 0.96 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 1.25 5.99 -51.93 -0.31 0.94 16 36 H 0.38 9.90 6.43 -40.82 -0.26 9.63 16 37 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.39 5.11 4.56 -40.82 -0.19 4.93 16 39 H 0.18 1.41 7.45 -52.49 -0.39 1.02 16 40 H 0.16 2.48 8.06 -52.48 -0.42 2.05 16 41 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 0.95 7.99 -51.93 -0.41 0.53 16 44 H 0.09 1.25 5.95 -51.93 -0.31 0.94 16 45 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -37.23 377.32 -9.27 -46.50 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -8.10 Total: 12.93 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.13 Total: -2.24 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: 2.23 Total: -69.94 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.07 Total: -11.15 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.23 -9.27 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575069561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.068 kcal (2) G-P(sol) polarization free energy of solvation -37.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds