Wall clock time and date at job start Wed Apr 1 2020 03:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46971 * 2 1 4 4 N 1.46497 * 109.47169 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00124 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99802 * 0.02562 * 5 4 3 7 7 C 1.38818 * 119.99832 * 179.97438 * 5 4 3 8 8 N 1.31619 * 119.99999 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99806 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47256 * 90.00225 * 9 7 5 11 11 H 1.48497 * 109.47055 * 210.00622 * 9 7 5 12 12 H 1.48508 * 109.47063 * 330.00179 * 9 7 5 13 13 N 1.46500 * 109.47103 * 119.99842 * 2 1 3 14 14 C 1.34770 * 120.00345 * 294.98543 * 13 2 1 15 15 O 1.21629 * 120.00117 * 5.18806 * 14 13 2 16 16 C 1.47310 * 120.00016 * 185.17707 * 14 13 2 17 17 C 1.37824 * 126.53047 * 359.69707 * 16 14 13 18 18 N 1.34782 * 108.25856 * 179.86367 * 17 16 14 19 19 H 0.96990 * 125.36892 * 180.18423 * 18 17 16 20 20 C 1.37314 * 109.26275 * 0.40201 * 18 17 16 21 21 C 1.48008 * 125.76124 * 179.77071 * 20 18 17 22 22 N 1.34168 * 126.69683 * 179.65687 * 21 20 18 23 23 N 1.28983 * 107.25331 * 179.87279 * 22 21 20 24 24 N 1.28723 * 108.98845 * 0.39976 * 23 22 21 25 25 H 0.96991 * 125.32701 * 179.76897 * 24 23 22 26 26 N 1.28877 * 109.35001 * 359.74796 * 24 23 22 27 27 C 1.35697 * 108.47527 * 359.74954 * 20 18 17 28 28 C 1.53003 * 109.47102 * 240.00354 * 2 1 3 29 29 C 1.53000 * 117.49703 * 294.04129 * 28 2 1 30 30 C 1.53002 * 117.49650 * 225.41961 * 28 2 1 31 31 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47262 * 299.99682 * 1 2 3 33 33 H 1.09001 * 109.47508 * 60.00003 * 1 2 3 34 34 H 1.08998 * 109.47335 * 299.99920 * 3 2 1 35 35 H 1.09006 * 109.46699 * 60.00293 * 3 2 1 36 36 H 0.97003 * 120.00298 * 0.02562 * 4 3 2 37 37 H 0.97005 * 119.99560 * 179.97438 * 8 7 5 38 38 H 0.97005 * 119.99503 * 114.99049 * 13 2 1 39 39 H 1.07998 * 125.87059 * 359.97324 * 17 16 14 40 40 H 1.08004 * 126.47176 * 179.97438 * 27 20 18 41 41 H 1.09000 * 115.56192 * 79.73478 * 28 2 1 42 42 H 1.08994 * 117.50024 * 145.02673 * 29 28 2 43 43 H 1.09001 * 117.49899 * 0.02562 * 29 28 2 44 44 H 1.09006 * 117.49997 * 359.97438 * 30 28 2 45 45 H 1.08995 * 117.50265 * 214.97959 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1896 2.6285 0.0002 6 1 3.6495 3.5638 -0.0002 7 6 5.5777 2.6285 0.0013 8 7 6.2358 1.4886 0.0023 9 14 6.5117 4.2463 0.0015 10 1 6.7581 4.6755 1.4015 11 1 7.8097 4.0685 -0.6976 12 1 5.7096 5.2810 -0.6996 13 7 2.0183 -0.6906 1.1962 14 6 1.7781 -0.1742 2.4177 15 8 1.0767 0.8126 2.5336 16 6 2.3650 -0.8052 3.6124 17 6 3.1698 -1.9238 3.6379 18 7 3.4998 -2.1775 4.9198 19 1 4.0617 -2.9085 5.2208 20 6 2.9111 -1.2407 5.7331 21 6 3.0279 -1.1792 7.2072 22 7 2.4668 -0.2699 8.0187 23 7 2.8097 -0.5706 9.2252 24 7 3.5614 -1.6152 9.1990 25 1 3.9549 -2.0426 9.9757 26 7 3.7089 -2.0047 7.9794 27 6 2.2046 -0.3806 4.9569 28 6 2.0399 -0.7212 -1.2493 29 6 1.7541 -2.2197 -1.3661 30 6 3.1736 -1.7326 -1.0678 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8901 36 1 3.9900 0.6026 0.0006 37 1 7.2059 1.4887 0.0027 38 1 2.5146 -1.5195 1.1090 39 1 3.4835 -2.4974 2.7783 40 1 1.6285 0.4669 5.2980 41 1 2.0315 -0.1341 -2.1677 42 1 1.5577 -2.6186 -2.3612 43 1 1.2024 -2.6917 -0.5531 44 1 3.5563 -1.8839 -0.0584 45 1 3.9109 -1.8110 -1.8667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575069561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:11 Heat of formation + Delta-G solvation = 157.000608 kcal Electronic energy + Delta-G solvation = -30274.762222 eV Core-core repulsion = 26138.787385 eV Total energy + Delta-G solvation = -4135.974837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.51682 -42.39361 -41.04854 -38.58835 -36.19073 -35.47294 -34.71961 -34.45248 -33.27126 -32.30058 -31.46640 -29.97413 -27.40163 -25.69246 -25.31451 -24.76058 -24.18071 -23.51770 -23.00812 -21.84053 -20.82710 -20.36258 -20.10635 -19.29340 -18.97855 -18.22334 -17.66498 -16.92266 -16.27176 -16.02646 -15.94554 -15.67485 -15.36602 -15.21334 -15.05961 -14.94123 -14.85591 -14.38986 -13.94504 -13.79699 -13.65418 -13.37275 -13.31731 -13.14391 -12.85648 -12.76217 -12.48924 -12.44226 -12.26190 -12.21336 -12.13457 -12.06738 -11.96275 -11.72298 -11.04837 -10.98644 -10.87240 -10.51470 -10.10271 -9.75289 -9.19001 -8.83414 -7.88632 -5.12072 -0.12244 0.33356 0.85391 1.32560 1.45738 1.47951 1.55410 1.76372 1.86794 2.31104 2.59477 2.72331 2.77612 3.04951 3.27460 3.43999 3.71747 3.91523 3.97042 4.04481 4.09831 4.12417 4.20463 4.32621 4.36491 4.42401 4.66880 4.71413 4.84033 4.87562 4.95396 4.96513 5.02070 5.06962 5.17084 5.30357 5.35696 5.40473 5.45480 5.49616 5.54455 5.56033 5.66779 5.84547 6.35016 6.39440 6.84379 7.04641 7.43119 7.55443 8.19946 8.52726 9.34164 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008966 B = 0.003422 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.248465 B = 8180.357844 C = 9996.464021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.211 3.789 3 C 0.139 3.861 4 N -0.725 5.725 5 C -0.241 4.241 6 H 0.059 0.941 7 C -0.066 4.066 8 N -0.958 5.958 9 Si 0.961 3.039 10 H -0.294 1.294 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.703 5.703 14 C 0.589 3.411 15 O -0.579 6.579 16 C -0.251 4.251 17 C 0.104 3.896 18 N -0.504 5.504 19 H 0.441 0.559 20 C 0.053 3.947 21 C 0.243 3.757 22 N -0.292 5.292 23 N -0.052 5.052 24 N -0.195 5.195 25 H 0.496 0.504 26 N -0.298 5.298 27 C -0.084 4.084 28 C -0.161 4.161 29 C -0.146 4.146 30 C -0.179 4.179 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.016 0.984 35 H 0.021 0.979 36 H 0.383 0.617 37 H 0.249 0.751 38 H 0.405 0.595 39 H 0.222 0.778 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 -18.892 11.064 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.124 3.876 3 C 0.011 3.989 4 N -0.369 5.369 5 C -0.373 4.373 6 H 0.077 0.923 7 C -0.258 4.258 8 N -0.609 5.609 9 Si 0.791 3.209 10 H -0.222 1.222 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.357 5.357 14 C 0.379 3.621 15 O -0.459 6.459 16 C -0.260 4.260 17 C -0.038 4.038 18 N -0.099 5.099 19 H 0.283 0.717 20 C -0.059 4.059 21 C -0.037 4.037 22 N -0.165 5.165 23 N -0.047 5.047 24 N -0.046 5.046 25 H 0.356 0.644 26 N -0.151 5.151 27 C -0.112 4.112 28 C -0.180 4.180 29 C -0.182 4.182 30 C -0.217 4.217 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.034 0.966 35 H 0.039 0.961 36 H 0.217 0.783 37 H 0.058 0.942 38 H 0.245 0.755 39 H 0.239 0.761 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.113 0.887 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.935 -17.877 11.849 22.541 hybrid contribution 1.743 0.261 0.209 1.774 sum -5.192 -17.616 12.059 21.970 Atomic orbital electron populations 1.22019 0.92843 1.03082 1.02465 1.19824 0.94164 0.90306 0.83272 1.21177 0.84580 0.95489 0.97618 1.42238 1.00584 1.05161 1.88892 1.19538 0.89722 0.87291 1.40785 0.92333 1.25295 0.96904 0.99529 1.04121 1.69764 1.06311 1.25075 1.59737 0.85322 0.78176 0.80310 0.77082 1.22218 1.21558 1.20106 1.45846 1.57984 1.27448 1.04469 1.17579 0.79054 0.82515 0.82984 1.90681 1.40540 1.27778 1.86933 1.19645 1.10746 1.02352 0.93277 1.22858 0.96498 0.96968 0.87523 1.41394 1.38856 1.24371 1.05276 0.71691 1.16237 1.07858 0.97915 0.83939 1.22478 0.96164 0.90833 0.94200 1.76190 1.22097 1.22986 0.95182 1.78898 1.06943 1.02521 1.16304 1.47699 1.30986 1.18055 1.07888 0.64442 1.74896 1.23541 1.25076 0.91596 1.20913 0.99954 0.99021 0.91343 1.22271 1.05206 0.92767 0.97748 1.23099 0.97111 0.93742 1.04285 1.22930 0.92390 1.03503 1.02858 0.90260 0.92931 0.91139 0.96605 0.96095 0.78295 0.94177 0.75544 0.76147 0.84479 0.88048 0.87095 0.87168 0.88650 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 8.37 71.98 0.60 -3.64 16 2 C 0.21 6.98 0.52 3.60 0.00 6.98 16 3 C 0.14 6.28 4.89 86.38 0.42 6.70 16 4 N -0.73 -38.03 5.22 -343.44 -1.79 -39.82 16 5 C -0.24 -14.28 9.99 84.03 0.84 -13.44 16 6 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 7 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 8 N -0.96 -57.82 13.06 21.65 0.28 -57.53 16 9 Si 0.96 48.14 29.55 68.60 2.03 50.16 16 10 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 11 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 N -0.70 -21.67 4.48 -426.25 -1.91 -23.58 16 14 C 0.59 21.57 7.22 86.63 0.63 22.20 16 15 O -0.58 -26.04 13.16 -4.12 -0.05 -26.09 16 16 C -0.25 -7.67 6.14 -20.08 -0.12 -7.79 16 17 C 0.10 2.10 11.44 84.14 0.96 3.06 16 18 N -0.50 -9.15 6.01 -182.99 -1.10 -10.25 16 19 H 0.44 4.83 8.96 -92.72 -0.83 4.00 16 20 C 0.05 1.36 7.08 40.29 0.29 1.64 16 21 C 0.24 5.97 8.20 137.16 1.12 7.09 16 22 N -0.29 -7.95 12.52 -52.38 -0.66 -8.61 16 23 N -0.05 -1.08 13.46 37.02 0.50 -0.58 16 24 N -0.19 -2.62 7.90 37.02 0.29 -2.32 16 25 H 0.50 1.24 8.96 -347.52 -3.11 -1.87 16 26 N -0.30 -5.41 12.41 -52.33 -0.65 -6.06 16 27 C -0.08 -2.66 10.59 22.59 0.24 -2.42 16 28 C -0.16 -4.60 4.48 -10.79 -0.05 -4.65 16 29 C -0.15 -2.82 9.53 30.60 0.29 -2.53 16 30 C -0.18 -4.60 8.98 30.60 0.27 -4.33 16 31 H 0.08 1.86 7.71 -2.39 -0.02 1.84 16 32 H 0.05 1.81 6.36 -2.39 -0.02 1.80 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.02 1.09 5.99 -2.38 -0.01 1.08 16 36 H 0.38 19.99 6.43 -92.71 -0.60 19.39 16 37 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 38 H 0.40 9.79 4.56 -92.70 -0.42 9.36 16 39 H 0.22 2.53 7.45 -2.91 -0.02 2.50 16 40 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 41 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.11 1.76 7.99 -2.39 -0.02 1.74 16 44 H 0.10 2.35 5.95 -2.38 -0.01 2.34 16 45 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -84.32 377.32 -0.96 -85.27 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -3.86 Total: 33.96 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.96 Total: 5.46 kcal Atomic # 7 Polarization: -143.73 SS G_CDS: -5.03 Total: -148.76 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.16 kcal Total: -84.32 -0.96 -85.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575069561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.274 kcal (2) G-P(sol) polarization free energy of solvation -84.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds