Wall clock time and date at job start Wed Apr 1 2020 03:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 C 1.50701 * 109.46684 * 240.00057 * 2 1 3 5 5 H 1.08005 * 120.00103 * 239.99710 * 4 2 1 6 6 C 1.37880 * 120.00183 * 60.00634 * 4 2 1 7 7 N 1.31515 * 119.99651 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47267 * 59.99726 * 8 6 4 10 10 H 1.48506 * 109.46930 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47325 * 299.99476 * 8 6 4 12 12 C 1.52996 * 109.47065 * 120.00231 * 2 1 3 13 13 N 1.46498 * 109.47132 * 299.99685 * 12 2 1 14 14 C 1.34779 * 119.99755 * 180.02562 * 13 12 2 15 15 O 1.21586 * 120.00299 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99820 * 180.02562 * 14 13 12 17 17 N 1.40098 * 119.99725 * 359.97438 * 16 14 13 18 18 C 1.39694 * 119.99679 * 180.02562 * 17 16 14 19 19 C 1.39001 * 120.01756 * 359.97438 * 18 17 16 20 20 C 1.38160 * 120.15989 * 180.02562 * 19 18 17 21 21 C 1.38091 * 120.19892 * 359.97438 * 20 19 18 22 22 C 1.39325 * 120.03051 * 0.02562 * 21 20 19 23 23 C 1.48469 * 120.07740 * 179.97438 * 22 21 20 24 24 N 1.34046 * 126.67102 * 179.69282 * 23 22 21 25 25 N 1.28984 * 107.27233 * 179.83330 * 24 23 22 26 26 N 1.28737 * 108.93625 * 0.43264 * 25 24 23 27 27 H 0.97006 * 125.33486 * 179.74798 * 26 25 24 28 28 N 1.28861 * 109.31917 * 359.72107 * 26 25 24 29 29 C 1.38695 * 120.01327 * 179.97438 * 18 17 16 30 30 H 1.09003 * 109.46855 * 299.99954 * 1 2 3 31 31 H 1.08999 * 109.47193 * 59.99255 * 1 2 3 32 32 H 1.09000 * 109.47240 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47194 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47409 * 299.99977 * 3 2 1 35 35 H 1.09003 * 109.47196 * 60.00255 * 3 2 1 36 36 H 0.97001 * 119.99579 * 180.02562 * 7 6 4 37 37 H 1.09005 * 109.47180 * 179.97438 * 12 2 1 38 38 H 1.09000 * 109.47305 * 59.99778 * 12 2 1 39 39 H 0.97000 * 119.99997 * 0.02562 * 13 12 2 40 40 H 0.97001 * 119.99634 * 179.97438 * 16 14 13 41 41 H 0.97001 * 120.00050 * 0.02562 * 17 16 14 42 42 H 1.08000 * 119.91500 * 0.03969 * 19 18 17 43 43 H 1.08005 * 119.90029 * 180.02562 * 20 19 18 44 44 H 1.07998 * 119.98844 * 180.28547 * 21 20 19 45 45 H 1.07999 * 120.10102 * 359.96085 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8268 -0.4198 -5.2205 11 1 3.8073 -1.1190 -4.0079 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6694 15 8 2.5767 -1.4795 3.7810 16 7 1.4281 0.1441 4.7700 17 7 0.6223 1.2829 4.6414 18 6 0.1567 1.9414 5.7821 19 6 0.4923 1.4668 7.0447 20 6 0.0330 2.1155 8.1748 21 6 -0.7613 3.2388 8.0563 22 6 -1.1026 3.7216 6.7948 23 6 -1.9570 4.9290 6.6662 24 7 -2.3590 5.5075 5.5258 25 7 -3.0854 6.5237 5.8472 26 7 -3.1440 6.6062 7.1306 27 1 -3.6255 7.2859 7.6277 28 7 -2.4632 5.6439 7.6512 29 6 -0.6407 3.0692 5.6552 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 0.7082 1.1610 -3.4844 37 1 3.1300 -0.7217 1.2490 38 1 1.6766 -1.7489 1.2492 39 1 0.9938 0.7578 2.3564 40 1 1.6625 -0.1874 5.6509 41 1 0.3876 1.6141 3.7604 42 1 1.1137 0.5889 7.1425 43 1 0.2967 1.7433 9.1538 44 1 -1.1146 3.7459 8.9420 45 1 -0.9022 3.4402 4.6752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589267096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:30 Heat of formation + Delta-G solvation = 165.191171 kcal Electronic energy + Delta-G solvation = -29021.928546 eV Core-core repulsion = 24886.308879 eV Total energy + Delta-G solvation = -4135.619667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.74136 -40.27329 -39.32429 -36.67456 -36.22427 -34.65825 -33.80297 -33.26074 -32.07070 -30.92640 -30.56266 -28.18048 -25.75737 -25.73039 -25.10263 -24.94413 -24.64565 -22.65568 -21.75027 -20.77416 -19.56381 -19.15941 -18.47168 -18.27277 -17.42470 -16.39013 -16.32408 -15.87570 -15.37289 -15.15888 -14.85725 -14.61573 -14.52334 -14.16397 -13.87570 -13.79526 -13.65922 -13.03316 -12.92516 -12.62947 -12.22724 -12.14332 -12.00956 -11.63084 -11.54018 -11.43585 -11.34012 -11.22366 -11.04122 -10.86331 -10.74140 -10.41724 -10.28427 -10.09025 -9.67180 -9.48819 -9.36847 -9.02762 -8.83184 -8.54470 -8.36552 -7.37864 -6.03292 -4.13536 0.43628 0.92259 1.25934 1.85451 1.99969 2.11979 3.30099 3.33667 3.34599 3.36465 3.38709 3.45140 3.62417 3.92755 4.38819 4.58801 4.68800 4.85365 4.99505 5.09710 5.16405 5.23573 5.29177 5.52264 5.59966 5.93765 6.03220 6.08146 6.18600 6.24381 6.29797 6.33038 6.46603 6.57280 6.72404 6.77631 6.84200 6.93200 6.99136 7.24333 7.34619 7.41760 7.53073 7.68534 7.85691 7.98612 8.09357 8.32335 8.38866 8.74229 8.87023 9.52382 10.98173 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.002263 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.556989 B =12368.127436 C =14333.629038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.728 5.728 14 C 0.706 3.294 15 O -0.583 6.583 16 N -0.541 5.541 17 N -0.544 5.544 18 C 0.224 3.776 19 C -0.178 4.178 20 C -0.068 4.068 21 C -0.140 4.140 22 C 0.033 3.967 23 C 0.221 3.779 24 N -0.263 5.263 25 N -0.049 5.049 26 N -0.230 5.230 27 H 0.475 0.525 28 N -0.293 5.293 29 C -0.148 4.148 30 H 0.003 0.997 31 H 0.087 0.913 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.087 0.913 35 H 0.004 0.996 36 H 0.261 0.739 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.390 0.610 40 H 0.428 0.572 41 H 0.426 0.574 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 10.569 22.932 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.024 3.976 13 N -0.384 5.384 14 C 0.406 3.594 15 O -0.458 6.458 16 N -0.297 5.297 17 N -0.273 5.273 18 C 0.119 3.881 19 C -0.202 4.202 20 C -0.087 4.087 21 C -0.162 4.162 22 C 0.028 3.972 23 C -0.059 4.059 24 N -0.136 5.136 25 N -0.044 5.044 26 N -0.075 5.075 27 H 0.329 0.671 28 N -0.144 5.144 29 C -0.174 4.174 30 H 0.022 0.978 31 H 0.105 0.895 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.023 0.977 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.226 0.774 40 H 0.272 0.728 41 H 0.270 0.730 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.247 10.247 22.271 25.564 hybrid contribution -0.091 0.128 -0.307 0.345 sum -7.338 10.375 21.964 25.375 Atomic orbital electron populations 1.21838 0.97720 0.99265 1.00012 1.18367 0.92815 0.92781 0.90467 1.21837 0.98699 0.98292 1.00012 1.20918 1.31664 1.12176 0.89777 0.92401 1.24877 0.94828 0.94913 0.98859 1.69788 1.36500 1.22689 1.23405 0.86619 0.79235 0.79780 0.82140 1.20275 1.21337 1.20272 1.21703 0.98161 0.95585 0.82153 1.45562 1.55199 1.32841 1.04760 1.15857 0.80597 0.82628 0.80353 1.90991 1.43347 1.27078 1.84334 1.44597 1.52765 1.23026 1.09270 1.43375 1.53404 1.23533 1.06942 1.17446 0.93253 0.91204 0.86149 1.20631 1.05788 1.02933 0.90863 1.20767 0.95568 0.94191 0.98157 1.20890 1.01305 0.98109 0.95917 1.16786 0.96355 0.90104 0.93909 1.23714 0.99744 0.97923 0.84504 1.76149 1.09995 1.02919 1.24515 1.78965 1.14470 1.14704 0.96235 1.47756 1.33633 1.21215 1.04924 0.67077 1.74906 1.11718 1.01256 1.26545 1.20370 1.01777 0.96124 0.99154 0.97760 0.89471 0.95323 0.95321 0.89479 0.97749 0.92898 0.92541 0.92546 0.77417 0.72762 0.73041 0.85880 0.85121 0.85238 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 4 C -0.51 -13.05 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.32 9.35 55.43 0.52 -22.80 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.15 3.04 4.50 -4.05 -0.02 3.03 16 13 N -0.73 -12.55 4.92 -65.22 -0.32 -12.87 16 14 C 0.71 11.98 8.68 -86.91 -0.75 11.23 16 15 O -0.58 -12.01 17.18 5.29 0.09 -11.92 16 16 N -0.54 -6.86 6.22 27.64 0.17 -6.69 16 17 N -0.54 -6.00 6.45 32.39 0.21 -5.79 16 18 C 0.22 2.25 6.71 -83.82 -0.56 1.68 16 19 C -0.18 -1.54 9.48 -39.33 -0.37 -1.92 16 20 C -0.07 -0.51 10.03 -39.66 -0.40 -0.91 16 21 C -0.14 -1.16 9.69 -39.23 -0.38 -1.54 16 22 C 0.03 0.32 5.87 -104.92 -0.62 -0.29 16 23 C 0.22 2.32 7.94 -156.31 -1.24 1.08 16 24 N -0.26 -3.06 12.23 32.16 0.39 -2.66 16 25 N -0.05 -0.47 13.47 60.35 0.81 0.35 16 26 N -0.23 -1.48 7.90 60.35 0.48 -1.01 16 27 H 0.48 0.69 8.96 -340.37 -3.05 -2.36 16 28 N -0.29 -2.54 12.08 32.17 0.39 -2.15 16 29 C -0.15 -1.50 9.55 -39.05 -0.37 -1.87 16 30 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 31 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 35 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 36 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.39 6.04 4.08 -40.82 -0.17 5.87 16 40 H 0.43 4.64 6.70 -182.60 -1.22 3.41 16 41 H 0.43 4.59 6.71 -182.60 -1.23 3.37 16 42 H 0.12 0.92 6.19 -52.49 -0.32 0.59 16 43 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 44 H 0.13 0.91 7.88 -52.49 -0.41 0.50 16 45 H 0.14 1.39 7.88 -52.49 -0.41 0.97 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -31.54 373.87 -11.02 -42.57 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -9.82 Total: 6.96 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -4.56 Total: -5.16 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 2.65 Total: -53.63 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.54 -11.02 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.759 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds