Wall clock time and date at job start Wed Apr 1 2020 03:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 C 1.50701 * 109.46684 * 240.00057 * 2 1 3 5 5 H 1.08005 * 120.00103 * 239.99710 * 4 2 1 6 6 C 1.37880 * 120.00183 * 60.00634 * 4 2 1 7 7 N 1.31515 * 119.99651 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99950 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47267 * 59.99726 * 8 6 4 10 10 H 1.48506 * 109.46930 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47325 * 299.99476 * 8 6 4 12 12 C 1.52996 * 109.47065 * 120.00231 * 2 1 3 13 13 N 1.46498 * 109.47132 * 299.99685 * 12 2 1 14 14 C 1.34779 * 119.99755 * 180.02562 * 13 12 2 15 15 O 1.21586 * 120.00299 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99820 * 180.02562 * 14 13 12 17 17 N 1.40098 * 119.99725 * 359.97438 * 16 14 13 18 18 C 1.39694 * 119.99679 * 180.02562 * 17 16 14 19 19 C 1.39001 * 120.01756 * 359.97438 * 18 17 16 20 20 C 1.38160 * 120.15989 * 180.02562 * 19 18 17 21 21 C 1.38091 * 120.19892 * 359.97438 * 20 19 18 22 22 C 1.39325 * 120.03051 * 0.02562 * 21 20 19 23 23 C 1.48469 * 120.07740 * 179.97438 * 22 21 20 24 24 N 1.34046 * 126.67102 * 179.69282 * 23 22 21 25 25 N 1.28984 * 107.27233 * 179.83330 * 24 23 22 26 26 N 1.28737 * 108.93625 * 0.43264 * 25 24 23 27 27 H 0.97006 * 125.33486 * 179.74798 * 26 25 24 28 28 N 1.28861 * 109.31917 * 359.72107 * 26 25 24 29 29 C 1.38695 * 120.01327 * 179.97438 * 18 17 16 30 30 H 1.09003 * 109.46855 * 299.99954 * 1 2 3 31 31 H 1.08999 * 109.47193 * 59.99255 * 1 2 3 32 32 H 1.09000 * 109.47240 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47194 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47409 * 299.99977 * 3 2 1 35 35 H 1.09003 * 109.47196 * 60.00255 * 3 2 1 36 36 H 0.97001 * 119.99579 * 180.02562 * 7 6 4 37 37 H 1.09005 * 109.47180 * 179.97438 * 12 2 1 38 38 H 1.09000 * 109.47305 * 59.99778 * 12 2 1 39 39 H 0.97000 * 119.99997 * 0.02562 * 13 12 2 40 40 H 0.97001 * 119.99634 * 179.97438 * 16 14 13 41 41 H 0.97001 * 120.00050 * 0.02562 * 17 16 14 42 42 H 1.08000 * 119.91500 * 0.03969 * 19 18 17 43 43 H 1.08005 * 119.90029 * 180.02562 * 20 19 18 44 44 H 1.07998 * 119.98844 * 180.28547 * 21 20 19 45 45 H 1.07999 * 120.10102 * 359.96085 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8268 -0.4198 -5.2205 11 1 3.8073 -1.1190 -4.0079 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6694 15 8 2.5767 -1.4795 3.7810 16 7 1.4281 0.1441 4.7700 17 7 0.6223 1.2829 4.6414 18 6 0.1567 1.9414 5.7821 19 6 0.4923 1.4668 7.0447 20 6 0.0330 2.1155 8.1748 21 6 -0.7613 3.2388 8.0563 22 6 -1.1026 3.7216 6.7948 23 6 -1.9570 4.9290 6.6662 24 7 -2.3590 5.5075 5.5258 25 7 -3.0854 6.5237 5.8472 26 7 -3.1440 6.6062 7.1306 27 1 -3.6255 7.2859 7.6277 28 7 -2.4632 5.6439 7.6512 29 6 -0.6407 3.0692 5.6552 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 0.7082 1.1610 -3.4844 37 1 3.1300 -0.7217 1.2490 38 1 1.6766 -1.7489 1.2492 39 1 0.9938 0.7578 2.3564 40 1 1.6625 -0.1874 5.6509 41 1 0.3876 1.6141 3.7604 42 1 1.1137 0.5889 7.1425 43 1 0.2967 1.7433 9.1538 44 1 -1.1146 3.7459 8.9420 45 1 -0.9022 3.4402 4.6752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589267096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:30 Heat of formation + Delta-G solvation = 143.988477 kcal Electronic energy + Delta-G solvation = -29022.847964 eV Core-core repulsion = 24886.308879 eV Total energy + Delta-G solvation = -4136.539085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.43421 -41.42461 -40.25917 -38.25599 -37.35720 -35.37838 -34.99639 -34.46895 -33.09081 -32.42004 -31.45599 -29.01997 -27.55698 -27.48213 -26.74013 -25.69152 -25.51553 -23.40439 -22.65185 -21.94992 -20.69192 -20.30197 -19.81346 -19.17393 -18.11255 -17.82515 -17.32501 -17.01414 -16.71487 -16.63441 -16.25528 -15.61425 -15.54992 -15.14063 -14.95186 -14.89476 -14.70511 -14.43046 -14.41377 -14.00046 -13.32908 -13.25120 -13.08844 -13.00123 -12.66829 -12.66486 -12.60843 -12.35671 -12.24436 -12.21346 -12.13094 -12.04963 -11.79002 -11.62730 -11.47965 -11.18038 -10.70502 -10.46525 -10.36589 -9.94802 -9.71088 -8.25381 -8.00437 -6.15924 -0.25080 0.21636 0.57390 0.92229 1.38057 1.46025 1.46581 1.47410 1.53606 2.03029 2.11065 2.49012 2.70733 2.92129 3.22065 3.23540 3.76046 3.98655 4.08522 4.28865 4.38591 4.41823 4.47945 4.54011 4.60727 4.69860 4.76388 4.94354 5.00887 5.05285 5.08459 5.20728 5.23703 5.32681 5.35894 5.51640 5.55104 5.57880 5.65209 5.68365 5.69324 5.84176 6.13212 6.16299 6.23332 6.44203 6.47480 6.88170 7.14534 7.14827 7.45452 7.51901 8.98324 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.002263 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.556989 B =12368.127436 C =14333.629038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.053 3.947 3 C -0.121 4.121 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.163 3.837 13 N -0.723 5.723 14 C 0.707 3.293 15 O -0.622 6.622 16 N -0.521 5.521 17 N -0.546 5.546 18 C 0.211 3.789 19 C -0.179 4.179 20 C -0.062 4.062 21 C -0.133 4.133 22 C 0.019 3.981 23 C 0.209 3.791 24 N -0.296 5.296 25 N -0.061 5.061 26 N -0.200 5.200 27 H 0.494 0.506 28 N -0.288 5.288 29 C -0.155 4.155 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.260 0.740 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.400 0.600 40 H 0.438 0.562 41 H 0.427 0.573 42 H 0.136 0.864 43 H 0.162 0.838 44 H 0.144 0.856 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 11.274 25.273 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 C 0.039 3.961 13 N -0.379 5.379 14 C 0.407 3.593 15 O -0.500 6.500 16 N -0.276 5.276 17 N -0.277 5.277 18 C 0.108 3.892 19 C -0.203 4.203 20 C -0.080 4.080 21 C -0.156 4.156 22 C 0.015 3.985 23 C -0.071 4.071 24 N -0.168 5.168 25 N -0.055 5.055 26 N -0.051 5.051 27 H 0.353 0.647 28 N -0.141 5.141 29 C -0.181 4.181 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.237 0.763 40 H 0.286 0.714 41 H 0.270 0.730 42 H 0.154 0.846 43 H 0.179 0.821 44 H 0.162 0.838 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.790 11.015 24.673 28.120 hybrid contribution -0.015 0.021 -0.854 0.855 sum -7.806 11.036 23.818 27.387 Atomic orbital electron populations 1.21683 0.97175 0.98760 1.00301 1.18352 0.93187 0.92997 0.90286 1.21682 0.98054 0.97884 1.00300 1.21230 1.31744 1.12226 0.91391 0.93454 1.25448 0.95170 0.95591 1.00969 1.69902 1.36939 1.23293 1.23635 0.85826 0.78631 0.78809 0.79588 1.20245 1.21022 1.20237 1.21241 0.97153 0.94903 0.82779 1.45233 1.55499 1.33027 1.04163 1.15806 0.80385 0.82365 0.80786 1.90967 1.45064 1.28866 1.85084 1.44189 1.51889 1.23039 1.08490 1.43353 1.53769 1.23109 1.07496 1.17542 0.93914 0.91435 0.86281 1.20908 1.05508 1.03255 0.90636 1.21110 0.94402 0.93381 0.99154 1.21139 1.00602 0.98083 0.95728 1.16945 0.96806 0.90281 0.94502 1.23883 1.00254 0.98436 0.84537 1.76125 1.11180 1.03880 1.25611 1.78900 1.14730 1.14588 0.97324 1.47821 1.32240 1.20747 1.04326 0.64655 1.74867 1.11702 1.01406 1.26126 1.20361 1.02101 0.96358 0.99239 0.94710 0.91848 0.96156 0.96156 0.91856 0.94700 0.93071 0.93935 0.93939 0.76252 0.71442 0.73021 0.84586 0.82061 0.83813 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -27.50 8.01 25.60 0.21 -27.30 16 5 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 6 C 0.03 1.47 5.15 84.66 0.44 1.90 16 7 N -0.90 -47.74 9.35 21.45 0.20 -47.54 16 8 Si 0.94 42.43 29.54 68.60 2.03 44.45 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.16 6.80 4.50 86.38 0.39 7.19 16 13 N -0.72 -24.32 4.92 -478.53 -2.36 -26.68 16 14 C 0.71 23.37 8.68 179.05 1.55 24.93 16 15 O -0.62 -25.46 17.18 -3.99 -0.07 -25.52 16 16 N -0.52 -12.41 6.22 -184.74 -1.15 -13.56 16 17 N -0.55 -11.22 6.45 -51.43 -0.33 -11.55 16 18 C 0.21 3.88 6.71 38.18 0.26 4.14 16 19 C -0.18 -2.64 9.48 22.43 0.21 -2.43 16 20 C -0.06 -0.73 10.03 22.22 0.22 -0.51 16 21 C -0.13 -1.87 9.69 22.50 0.22 -1.65 16 22 C 0.02 0.34 5.87 -20.06 -0.12 0.23 16 23 C 0.21 4.15 7.94 137.38 1.09 5.24 16 24 N -0.30 -6.74 12.23 -52.18 -0.64 -7.38 16 25 N -0.06 -1.11 13.47 37.02 0.50 -0.61 16 26 N -0.20 -2.25 7.90 37.02 0.29 -1.96 16 27 H 0.49 0.42 8.96 -347.53 -3.12 -2.70 16 28 N -0.29 -4.48 12.08 -52.13 -0.63 -5.11 16 29 C -0.15 -2.98 9.55 22.61 0.22 -2.76 16 30 H 0.03 1.26 6.86 -2.39 -0.02 1.25 16 31 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 35 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 36 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 37 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.40 11.79 4.08 -92.71 -0.38 11.41 16 40 H 0.44 8.64 6.70 -213.32 -1.43 7.21 16 41 H 0.43 8.62 6.71 -213.32 -1.43 7.19 16 42 H 0.14 1.61 6.19 -2.91 -0.02 1.60 16 43 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 44 H 0.14 1.59 7.88 -2.91 -0.02 1.56 16 45 H 0.13 2.66 7.88 -2.91 -0.02 2.64 16 Total: -1.00 -68.16 373.87 -1.59 -69.75 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -5.25 Total: 23.85 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.82 Total: 1.87 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -4.11 Total: -114.40 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.07 Total: -25.52 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -68.16 -1.59 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.737 kcal (2) G-P(sol) polarization free energy of solvation -68.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds