Wall clock time and date at job start Wed Apr 1 2020 02:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 C 1.50693 * 109.52865 * 60.07426 * 3 2 1 5 5 O 1.20824 * 120.00580 * 119.91861 * 4 3 2 6 6 O 1.34235 * 119.99759 * 299.92584 * 4 3 2 7 7 C 1.53350 * 109.47562 * 180.37433 * 3 2 1 8 8 C 1.53040 * 109.60855 * 58.54779 * 7 3 2 9 9 C 1.53192 * 109.31566 * 61.37387 * 8 7 3 10 10 N 1.46926 * 108.77077 * 305.36507 * 9 8 7 11 11 C 1.34779 * 120.63130 * 233.58269 * 10 9 8 12 12 O 1.21275 * 120.00182 * 180.02562 * 11 10 9 13 13 C 1.50703 * 119.99564 * 0.02645 * 11 10 9 14 14 C 1.50698 * 109.46836 * 179.97438 * 13 11 10 15 15 C 1.37643 * 120.12961 * 264.72928 * 14 13 11 16 16 C 1.38614 * 120.25227 * 179.72412 * 15 14 13 17 17 C 1.38658 * 120.49418 * 0.55297 * 16 15 14 18 18 C 1.37592 * 120.25169 * 359.72540 * 17 16 15 19 19 C 1.40698 * 120.12964 * 85.00100 * 14 13 11 20 20 C 1.41393 * 120.24451 * 359.97438 * 19 14 13 21 21 H 1.08006 * 119.99478 * 334.05925 * 20 19 14 22 22 C 1.39943 * 120.00300 * 154.05730 * 20 19 14 23 23 N 1.30822 * 120.00170 * 343.65283 * 22 20 19 24 24 Si 1.86802 * 119.99874 * 163.65619 * 22 20 19 25 25 H 1.48500 * 109.47237 * 60.00252 * 24 22 20 26 26 H 1.48507 * 109.46906 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47070 * 299.99633 * 24 22 20 28 28 C 1.46926 * 118.74079 * 53.61202 * 10 9 8 29 29 H 1.09008 * 109.46885 * 60.00667 * 1 2 3 30 30 H 1.08999 * 109.47436 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47381 * 300.00560 * 1 2 3 32 32 H 1.08997 * 109.47381 * 239.99440 * 2 1 3 33 33 H 1.09008 * 109.46885 * 119.99333 * 2 1 3 34 34 H 0.96701 * 116.99468 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.41996 * 298.50592 * 7 3 2 36 36 H 1.09004 * 109.41901 * 178.58282 * 7 3 2 37 37 H 1.09001 * 109.49252 * 301.42171 * 8 7 3 38 38 H 1.08996 * 109.49583 * 181.33047 * 8 7 3 39 39 H 1.08999 * 109.58685 * 185.58199 * 9 8 7 40 40 H 1.08996 * 109.70298 * 65.22165 * 9 8 7 41 41 H 1.08996 * 109.47519 * 299.99969 * 13 11 10 42 42 H 1.09003 * 109.46863 * 60.00162 * 13 11 10 43 43 H 1.08001 * 119.87257 * 359.97397 * 15 14 13 44 44 H 1.07993 * 119.75629 * 180.29727 * 16 15 14 45 45 H 1.08007 * 119.87239 * 179.74967 * 17 16 15 46 46 H 1.08007 * 120.12501 * 179.97438 * 18 17 16 47 47 H 0.96991 * 120.00428 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.58795 * 66.17368 * 28 10 9 49 49 H 1.09005 * 109.58978 * 186.45528 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5399 2.1536 1.2309 5 8 2.3264 2.6114 2.0257 6 8 0.2206 2.2783 1.4445 7 6 3.5735 1.4426 -0.0094 8 6 4.0795 0.6930 -1.2441 9 6 3.5893 1.4079 -2.5071 10 7 2.1276 1.5401 -2.4384 11 6 1.3499 1.0969 -3.4461 12 8 0.1446 1.2122 -3.3776 13 6 1.9782 0.4581 -4.6578 14 6 0.8990 0.0528 -5.6284 15 6 0.4089 -1.2333 -5.6191 16 6 -0.5878 -1.6073 -6.5069 17 6 -1.0942 -0.6958 -7.4209 18 6 -0.6152 0.5937 -7.4520 19 6 0.3926 0.9861 -6.5515 20 6 0.8920 2.3087 -6.5738 21 1 1.3208 2.7391 -5.6808 22 6 0.8309 3.0600 -7.7529 23 7 0.6185 2.4641 -8.8980 24 14 1.0526 4.9138 -7.6917 25 1 2.3899 5.2342 -7.1312 26 1 0.9454 5.4707 -9.0642 27 1 -0.0006 5.5102 -6.8314 28 6 1.5298 2.1651 -1.2507 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 -0.0521 2.7421 2.2480 35 1 3.9415 0.9500 0.8906 36 1 3.9357 2.4703 -0.0349 37 1 3.6971 -0.3276 -1.2320 38 1 5.1693 0.6738 -1.2366 39 1 3.8625 0.8247 -3.3865 40 1 4.0431 2.3970 -2.5691 41 1 2.6497 1.1704 -5.1371 42 1 2.5417 -0.4237 -4.3526 43 1 0.7995 -1.9528 -4.9147 44 1 -0.9699 -2.6172 -6.4894 45 1 -1.8679 -0.9991 -8.1108 46 1 -1.0108 1.3019 -8.1651 47 1 0.5764 2.9847 -9.7152 48 1 1.8158 3.2161 -1.2078 49 1 0.4440 2.0838 -1.3023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589592928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:43 Heat of formation + Delta-G solvation = -115.720513 kcal Electronic energy + Delta-G solvation = -31796.856924 eV Core-core repulsion = 27688.010854 eV Total energy + Delta-G solvation = -4108.846071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.26035 -39.64729 -37.93026 -36.93184 -36.35310 -34.29907 -33.60177 -32.17265 -31.69759 -29.86120 -29.42166 -27.18988 -25.42661 -25.17757 -24.41812 -23.20994 -22.20825 -20.92110 -20.36304 -19.24597 -18.23078 -18.15449 -17.20233 -17.03649 -16.45522 -16.12047 -15.55862 -15.19772 -14.84331 -14.68160 -14.46122 -14.29277 -14.00039 -13.63997 -13.51956 -13.47901 -13.08932 -12.87141 -12.69049 -12.55365 -12.21880 -11.93556 -11.83020 -11.69071 -11.54600 -11.28523 -11.21147 -11.07933 -11.05837 -10.97072 -10.93223 -10.77486 -10.66101 -10.59001 -10.39060 -10.34589 -9.46496 -9.34655 -9.15429 -9.12747 -8.41412 -7.29321 -7.26913 -6.71822 -4.32394 1.97158 2.72709 2.83043 2.98984 3.07110 3.10550 3.27362 3.29763 3.39848 3.94976 4.28792 4.48802 4.56878 4.67875 4.82534 4.88517 5.08331 5.18008 5.27553 5.29024 5.43498 5.51747 5.58329 5.64741 5.68879 5.73504 5.77074 5.82948 5.88987 5.97958 6.02155 6.09203 6.13402 6.25415 6.28947 6.29593 6.43324 6.50058 6.52745 6.70764 6.82200 7.10588 7.31483 7.44349 7.64120 7.69819 7.75833 7.94921 8.08950 8.15279 8.33538 8.66526 8.79658 8.93714 9.03714 10.22410 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.003609 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.354870 B = 7757.375948 C = 8723.324443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.107 4.107 3 C -0.064 4.064 4 C 0.494 3.506 5 O -0.517 6.517 6 O -0.502 6.502 7 C -0.098 4.098 8 C -0.136 4.136 9 C 0.105 3.895 10 N -0.622 5.622 11 C 0.520 3.480 12 O -0.514 6.514 13 C -0.068 4.068 14 C -0.182 4.182 15 C -0.080 4.080 16 C -0.239 4.239 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.130 3.870 20 C -0.457 4.457 21 H 0.073 0.927 22 C 0.078 3.922 23 N -0.795 5.795 24 Si 0.902 3.098 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.264 1.264 28 C 0.123 3.877 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.403 0.597 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.280 0.720 48 H 0.063 0.937 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.098 -1.352 15.332 16.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.144 4.144 3 C -0.066 4.066 4 C 0.336 3.664 5 O -0.405 6.405 6 O -0.314 6.314 7 C -0.136 4.136 8 C -0.174 4.174 9 C -0.019 4.019 10 N -0.358 5.358 11 C 0.310 3.690 12 O -0.387 6.387 13 C -0.108 4.108 14 C -0.183 4.183 15 C -0.099 4.099 16 C -0.259 4.259 17 C -0.125 4.125 18 C -0.178 4.178 19 C 0.128 3.872 20 C -0.486 4.486 21 H 0.091 0.909 22 C -0.139 4.139 23 N -0.421 5.421 24 Si 0.727 3.273 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.189 1.189 28 C 0.000 4.000 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.262 0.738 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.739 -1.320 14.923 16.043 hybrid contribution 0.038 1.226 0.580 1.357 sum 5.778 -0.094 15.503 16.545 Atomic orbital electron populations 1.22135 0.94313 1.02057 1.04156 1.21546 0.97529 0.92483 1.02881 1.21082 0.97332 0.97137 0.91042 1.23306 0.79981 0.76095 0.86979 1.90698 1.56921 1.46058 1.46800 1.84728 1.26050 1.72250 1.48352 1.21502 0.91096 1.02080 0.98896 1.22019 1.01158 1.00148 0.94108 1.21755 0.80291 1.01086 0.98734 1.48162 1.06648 1.62347 1.18674 1.21280 0.87252 0.77141 0.83312 1.90673 1.14490 1.54722 1.78816 1.20285 0.98428 0.99899 0.92140 1.19044 1.02480 0.93894 1.02926 1.20279 0.97026 0.94959 0.97598 1.20295 1.04473 0.98337 1.02777 1.20672 0.99206 0.94723 0.97940 1.21288 0.98786 0.95238 1.02526 1.17317 0.88796 0.91829 0.89291 1.19429 1.35531 0.97372 0.96300 0.90883 1.25858 0.92661 1.00483 0.94935 1.69805 1.35756 1.37703 0.98825 0.86470 0.79874 0.82840 0.78149 1.19111 1.20348 1.18907 1.21450 1.01189 0.94996 0.82377 0.90893 0.92841 0.90861 0.89828 0.91925 0.73776 0.90871 0.90837 0.90757 0.90076 0.88831 0.91394 0.88595 0.90674 0.89858 0.89731 0.89643 0.86594 0.90926 0.91847 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.06 37.16 0.34 -1.71 16 2 C -0.11 -1.17 4.50 -26.73 -0.12 -1.29 16 3 C -0.06 -0.70 0.52 -155.38 -0.08 -0.79 16 4 C 0.49 5.56 6.87 36.00 0.25 5.81 16 5 O -0.52 -6.92 16.76 -18.75 -0.31 -7.24 16 6 O -0.50 -4.60 10.28 -39.27 -0.40 -5.00 16 7 C -0.10 -0.95 4.03 -26.53 -0.11 -1.06 16 8 C -0.14 -1.17 5.74 -26.61 -0.15 -1.33 16 9 C 0.10 1.12 6.34 -3.71 -0.02 1.10 16 10 N -0.62 -8.85 2.42 -172.77 -0.42 -9.26 16 11 C 0.52 9.69 7.33 -10.98 -0.08 9.61 16 12 O -0.51 -11.70 15.08 5.56 0.08 -11.61 16 13 C -0.07 -1.28 3.53 -29.03 -0.10 -1.38 16 14 C -0.18 -4.27 4.43 -103.91 -0.46 -4.73 16 15 C -0.08 -1.82 9.66 -39.66 -0.38 -2.20 16 16 C -0.24 -5.52 10.05 -39.29 -0.39 -5.91 16 17 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 16 18 C -0.16 -4.22 8.69 -38.88 -0.34 -4.56 16 19 C 0.13 3.43 5.56 -106.83 -0.59 2.83 16 20 C -0.46 -11.87 8.14 -37.74 -0.31 -12.18 16 21 H 0.07 1.85 6.68 -52.48 -0.35 1.50 16 22 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 23 N -0.80 -20.40 10.97 55.55 0.61 -19.79 16 24 Si 0.90 18.82 29.59 -169.99 -5.03 13.79 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 28 C 0.12 1.64 4.81 -3.71 -0.02 1.62 16 29 H 0.07 1.09 5.95 -51.92 -0.31 0.78 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.81 5.33 -51.93 -0.28 0.53 16 32 H 0.08 0.97 5.97 -51.93 -0.31 0.66 16 33 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 34 H 0.40 1.93 9.10 45.56 0.41 2.35 16 35 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 36 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 37 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 1.80 6.86 -51.93 -0.36 1.44 16 42 H 0.07 1.18 7.60 -51.93 -0.39 0.78 16 43 H 0.08 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 46 H 0.12 3.17 6.22 -52.48 -0.33 2.84 16 47 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.11 1.68 5.03 -51.93 -0.26 1.42 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -31.95 381.26 -8.96 -40.91 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.17 Total: 9.75 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -3.07 Total: -17.29 kcal Atomic # 7 Polarization: -29.24 SS G_CDS: 0.19 Total: -29.05 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.63 Total: -23.85 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.95 -8.96 -40.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589592928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.814 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds