Wall clock time and date at job start Wed Apr 1 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 C 1.50693 * 109.52865 * 60.07426 * 3 2 1 5 5 O 1.20824 * 120.00580 * 119.91861 * 4 3 2 6 6 O 1.34235 * 119.99759 * 299.92584 * 4 3 2 7 7 C 1.53350 * 109.47562 * 180.37433 * 3 2 1 8 8 C 1.53040 * 109.60855 * 58.54779 * 7 3 2 9 9 C 1.53192 * 109.31566 * 61.37387 * 8 7 3 10 10 N 1.46926 * 108.77077 * 305.36507 * 9 8 7 11 11 C 1.34779 * 120.63130 * 233.58269 * 10 9 8 12 12 O 1.21275 * 120.00182 * 180.02562 * 11 10 9 13 13 C 1.50703 * 119.99564 * 0.02645 * 11 10 9 14 14 C 1.50698 * 109.46836 * 179.97438 * 13 11 10 15 15 C 1.37643 * 120.12961 * 264.72928 * 14 13 11 16 16 C 1.38614 * 120.25227 * 179.72412 * 15 14 13 17 17 C 1.38658 * 120.49418 * 0.55297 * 16 15 14 18 18 C 1.37592 * 120.25169 * 359.72540 * 17 16 15 19 19 C 1.40698 * 120.12964 * 85.00100 * 14 13 11 20 20 C 1.41393 * 120.24451 * 359.97438 * 19 14 13 21 21 H 1.08006 * 119.99478 * 334.05925 * 20 19 14 22 22 C 1.39943 * 120.00300 * 154.05730 * 20 19 14 23 23 N 1.30822 * 120.00170 * 343.65283 * 22 20 19 24 24 Si 1.86802 * 119.99874 * 163.65619 * 22 20 19 25 25 H 1.48500 * 109.47237 * 60.00252 * 24 22 20 26 26 H 1.48507 * 109.46906 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47070 * 299.99633 * 24 22 20 28 28 C 1.46926 * 118.74079 * 53.61202 * 10 9 8 29 29 H 1.09008 * 109.46885 * 60.00667 * 1 2 3 30 30 H 1.08999 * 109.47436 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47381 * 300.00560 * 1 2 3 32 32 H 1.08997 * 109.47381 * 239.99440 * 2 1 3 33 33 H 1.09008 * 109.46885 * 119.99333 * 2 1 3 34 34 H 0.96701 * 116.99468 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.41996 * 298.50592 * 7 3 2 36 36 H 1.09004 * 109.41901 * 178.58282 * 7 3 2 37 37 H 1.09001 * 109.49252 * 301.42171 * 8 7 3 38 38 H 1.08996 * 109.49583 * 181.33047 * 8 7 3 39 39 H 1.08999 * 109.58685 * 185.58199 * 9 8 7 40 40 H 1.08996 * 109.70298 * 65.22165 * 9 8 7 41 41 H 1.08996 * 109.47519 * 299.99969 * 13 11 10 42 42 H 1.09003 * 109.46863 * 60.00162 * 13 11 10 43 43 H 1.08001 * 119.87257 * 359.97397 * 15 14 13 44 44 H 1.07993 * 119.75629 * 180.29727 * 16 15 14 45 45 H 1.08007 * 119.87239 * 179.74967 * 17 16 15 46 46 H 1.08007 * 120.12501 * 179.97438 * 18 17 16 47 47 H 0.96991 * 120.00428 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.58795 * 66.17368 * 28 10 9 49 49 H 1.09005 * 109.58978 * 186.45528 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5399 2.1536 1.2309 5 8 2.3264 2.6114 2.0257 6 8 0.2206 2.2783 1.4445 7 6 3.5735 1.4426 -0.0094 8 6 4.0795 0.6930 -1.2441 9 6 3.5893 1.4079 -2.5071 10 7 2.1276 1.5401 -2.4384 11 6 1.3499 1.0969 -3.4461 12 8 0.1446 1.2122 -3.3776 13 6 1.9782 0.4581 -4.6578 14 6 0.8990 0.0528 -5.6284 15 6 0.4089 -1.2333 -5.6191 16 6 -0.5878 -1.6073 -6.5069 17 6 -1.0942 -0.6958 -7.4209 18 6 -0.6152 0.5937 -7.4520 19 6 0.3926 0.9861 -6.5515 20 6 0.8920 2.3087 -6.5738 21 1 1.3208 2.7391 -5.6808 22 6 0.8309 3.0600 -7.7529 23 7 0.6185 2.4641 -8.8980 24 14 1.0526 4.9138 -7.6917 25 1 2.3899 5.2342 -7.1312 26 1 0.9454 5.4707 -9.0642 27 1 -0.0006 5.5102 -6.8314 28 6 1.5298 2.1651 -1.2507 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 -0.0521 2.7421 2.2480 35 1 3.9415 0.9500 0.8906 36 1 3.9357 2.4703 -0.0349 37 1 3.6971 -0.3276 -1.2320 38 1 5.1693 0.6738 -1.2366 39 1 3.8625 0.8247 -3.3865 40 1 4.0431 2.3970 -2.5691 41 1 2.6497 1.1704 -5.1371 42 1 2.5417 -0.4237 -4.3526 43 1 0.7995 -1.9528 -4.9147 44 1 -0.9699 -2.6172 -6.4894 45 1 -1.8679 -0.9991 -8.1108 46 1 -1.0108 1.3019 -8.1651 47 1 0.5764 2.9847 -9.7152 48 1 1.8158 3.2161 -1.2078 49 1 0.4440 2.0838 -1.3023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589592928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:42 Heat of formation + Delta-G solvation = -133.483554 kcal Electronic energy + Delta-G solvation = -31797.627187 eV Core-core repulsion = 27688.010854 eV Total energy + Delta-G solvation = -4109.616334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20662 -40.85727 -39.42395 -38.35958 -37.22225 -35.47506 -35.36514 -33.34914 -33.11501 -31.32984 -30.83328 -28.74712 -27.04954 -26.23125 -25.68851 -24.12694 -23.06671 -22.79326 -21.90597 -20.50339 -19.30834 -19.04898 -18.99653 -18.21491 -17.59852 -17.29011 -17.02987 -16.49802 -16.18228 -16.08867 -15.60031 -15.37447 -15.30612 -15.10935 -14.74748 -14.47064 -14.38873 -14.32257 -13.98670 -13.71157 -13.45337 -13.33955 -13.22101 -12.90801 -12.78721 -12.75799 -12.67904 -12.59082 -12.45589 -12.11997 -12.09212 -11.93028 -11.88338 -11.70804 -11.49594 -11.28968 -11.23817 -11.16019 -11.01010 -10.62143 -9.57828 -9.19602 -9.12420 -8.57483 -6.26677 1.01075 1.07943 1.17175 1.36030 1.45607 1.55065 1.85370 1.92631 2.20367 2.27356 2.80799 3.40525 3.60047 3.69066 3.75207 4.02361 4.07643 4.09352 4.28508 4.34604 4.40580 4.41505 4.45478 4.52509 4.59022 4.64402 4.70774 4.74166 4.79231 4.79889 4.86193 4.92624 5.02632 5.05687 5.11344 5.14310 5.22113 5.26109 5.39561 5.41645 5.51622 5.55754 5.57908 5.62650 5.80319 6.06664 6.19349 6.24740 6.44972 6.50375 6.76813 6.95791 7.02020 7.14488 7.41394 8.38795 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012395 B = 0.003609 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.354870 B = 7757.375948 C = 8723.324443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.103 4.103 3 C -0.059 4.059 4 C 0.500 3.500 5 O -0.538 6.538 6 O -0.503 6.503 7 C -0.096 4.096 8 C -0.127 4.127 9 C 0.094 3.906 10 N -0.611 5.611 11 C 0.522 3.478 12 O -0.567 6.567 13 C -0.065 4.065 14 C -0.185 4.185 15 C -0.090 4.090 16 C -0.242 4.242 17 C -0.118 4.118 18 C -0.194 4.194 19 C 0.097 3.903 20 C -0.482 4.482 21 H 0.070 0.930 22 C 0.039 3.961 23 N -0.826 5.826 24 Si 0.967 3.033 25 H -0.253 1.253 26 H -0.267 1.267 27 H -0.273 1.273 28 C 0.123 3.877 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.423 0.577 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.285 0.715 48 H 0.067 0.933 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 -1.920 17.223 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.140 4.140 3 C -0.061 4.061 4 C 0.343 3.657 5 O -0.428 6.428 6 O -0.317 6.317 7 C -0.133 4.133 8 C -0.164 4.164 9 C -0.028 4.028 10 N -0.345 5.345 11 C 0.312 3.688 12 O -0.444 6.444 13 C -0.104 4.104 14 C -0.186 4.186 15 C -0.108 4.108 16 C -0.261 4.261 17 C -0.137 4.137 18 C -0.214 4.214 19 C 0.095 3.905 20 C -0.511 4.511 21 H 0.088 0.912 22 C -0.176 4.176 23 N -0.453 5.453 24 Si 0.789 3.211 25 H -0.177 1.177 26 H -0.192 1.192 27 H -0.198 1.198 28 C 0.000 4.000 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.285 0.715 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.121 0.879 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.874 -1.891 16.844 18.690 hybrid contribution -0.664 1.324 0.069 1.483 sum 7.209 -0.567 16.913 18.394 Atomic orbital electron populations 1.22076 0.95425 1.01815 1.02943 1.21521 0.96454 0.92479 1.03540 1.21041 0.98521 0.96828 0.89711 1.23247 0.80267 0.75569 0.86642 1.90695 1.57526 1.46998 1.47553 1.84681 1.25080 1.72276 1.49640 1.21522 0.89630 1.02328 0.99846 1.21992 1.02795 0.99596 0.92052 1.22108 0.77779 1.02410 1.00496 1.48089 1.08021 1.60703 1.17728 1.21124 0.86693 0.77071 0.83940 1.90658 1.16665 1.57134 1.79980 1.20280 0.97211 1.01484 0.91448 1.19536 1.02758 0.93828 1.02526 1.20715 0.96753 0.95379 0.97913 1.20705 1.04121 0.99362 1.01916 1.20934 0.99692 0.94261 0.98775 1.21291 1.00354 0.96143 1.03579 1.17705 0.89382 0.92941 0.90459 1.19570 1.36844 0.98046 0.96688 0.91169 1.26607 0.92093 1.04612 0.94283 1.69870 1.36591 1.39361 0.99446 0.85481 0.79950 0.77297 0.78408 1.17680 1.19181 1.19795 1.21437 0.99957 0.95526 0.83125 0.94142 0.92609 0.89993 0.90282 0.89994 0.71483 0.89974 0.91039 0.90423 0.87202 0.88042 0.90249 0.88658 0.86990 0.86522 0.86817 0.87911 0.88729 0.90428 0.91488 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 9.06 71.98 0.65 -3.23 16 2 C -0.10 -2.04 4.50 30.59 0.14 -1.90 16 3 C -0.06 -1.20 0.52 -52.75 -0.03 -1.22 16 4 C 0.50 10.41 6.87 71.23 0.49 10.90 16 5 O -0.54 -13.38 16.76 21.97 0.37 -13.01 16 6 O -0.50 -8.55 10.28 -51.47 -0.53 -9.08 16 7 C -0.10 -1.57 4.03 30.72 0.12 -1.45 16 8 C -0.13 -1.72 5.74 30.67 0.18 -1.54 16 9 C 0.09 1.75 6.34 86.36 0.55 2.30 16 10 N -0.61 -16.69 2.42 -818.90 -1.98 -18.67 16 11 C 0.52 19.30 7.33 87.66 0.64 19.95 16 12 O -0.57 -26.55 15.08 -3.02 -0.05 -26.60 16 13 C -0.06 -2.38 3.53 29.10 0.10 -2.28 16 14 C -0.18 -8.69 4.43 -19.40 -0.09 -8.77 16 15 C -0.09 -3.94 9.66 22.22 0.21 -3.73 16 16 C -0.24 -10.91 10.05 22.46 0.23 -10.69 16 17 C -0.12 -5.83 10.02 22.22 0.22 -5.61 16 18 C -0.19 -10.74 8.69 22.73 0.20 -10.55 16 19 C 0.10 5.29 5.56 -21.29 -0.12 5.17 16 20 C -0.48 -25.85 8.14 23.46 0.19 -25.66 16 21 H 0.07 3.67 6.68 -2.91 -0.02 3.65 16 22 C 0.04 1.97 5.16 85.26 0.44 2.41 16 23 N -0.83 -43.83 10.97 21.83 0.24 -43.59 16 24 Si 0.97 39.20 29.59 68.60 2.03 41.23 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 26 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 C 0.12 3.20 4.81 86.36 0.42 3.62 16 29 H 0.04 1.23 5.95 -2.38 -0.01 1.21 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.73 5.33 -2.39 -0.01 1.71 16 32 H 0.08 1.66 5.97 -2.39 -0.01 1.65 16 33 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.42 3.36 9.10 -74.06 -0.67 2.68 16 35 H 0.08 1.26 8.07 -2.39 -0.02 1.24 16 36 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 37 H 0.08 1.05 6.34 -2.39 -0.02 1.04 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 1.76 5.93 -2.39 -0.01 1.75 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 3.51 6.86 -2.39 -0.02 3.49 16 42 H 0.11 3.19 7.60 -2.39 -0.02 3.17 16 43 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 44 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 45 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 46 H 0.09 5.50 6.22 -2.91 -0.02 5.48 16 47 H 0.29 13.81 8.30 -92.72 -0.77 13.04 16 48 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.08 2.69 5.03 -2.38 -0.01 2.68 16 Total: -1.00 -72.41 381.26 4.95 -67.47 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.32 Total: 34.53 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 4.55 Total: -32.28 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -1.74 Total: -62.26 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -0.21 Total: -48.69 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -72.41 4.95 -67.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589592928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.018 kcal (2) G-P(sol) polarization free energy of solvation -72.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds