Wall clock time and date at job start Wed Apr 1 2020 03:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.39892 * 119.99511 * 179.97438 * 4 3 2 6 6 C 1.38763 * 119.97964 * 359.97438 * 5 4 3 7 7 C 1.38021 * 120.11998 * 179.97438 * 6 5 4 8 8 C 1.39334 * 120.07707 * 0.02734 * 7 6 5 9 9 C 1.48408 * 120.02542 * 179.97438 * 8 7 6 10 10 N 1.34065 * 126.68080 * 179.68387 * 9 8 7 11 11 N 1.28980 * 107.27087 * 179.83025 * 10 9 8 12 12 N 1.28738 * 108.94919 * 0.43403 * 11 10 9 13 13 H 0.96996 * 125.34238 * 179.71810 * 12 11 10 14 14 N 1.28871 * 109.31816 * 359.72272 * 12 11 10 15 15 C 1.39368 * 119.95476 * 359.97402 * 8 7 6 16 16 C 1.38435 * 119.88052 * 359.72248 * 15 8 7 17 17 N 1.40018 * 120.03833 * 180.29703 * 16 15 8 18 18 C 1.46498 * 120.00114 * 0.27828 * 17 16 15 19 19 C 1.50700 * 109.47232 * 179.97438 * 18 17 16 20 20 O 1.21295 * 120.00385 * 0.02562 * 19 18 17 21 21 N 1.34785 * 120.00411 * 179.97438 * 19 18 17 22 22 C 1.37085 * 120.00152 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00679 * 0.02562 * 22 21 19 24 24 C 1.38956 * 119.99810 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00051 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00020 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47053 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47477 * 120.00227 * 26 24 22 29 29 H 1.48503 * 109.46971 * 240.00092 * 26 24 22 30 30 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 34 34 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 37 37 H 0.96992 * 119.99966 * 359.97438 * 4 3 2 38 38 H 1.08003 * 119.94403 * 359.97438 * 6 5 4 39 39 H 1.07999 * 119.96353 * 179.97438 * 7 6 5 40 40 H 1.08004 * 120.05678 * 180.02562 * 15 8 7 41 41 H 0.97000 * 120.00052 * 180.27516 * 17 16 15 42 42 H 1.09002 * 109.47192 * 299.99759 * 18 17 16 43 43 H 1.09005 * 109.47242 * 59.99748 * 18 17 16 44 44 H 0.97003 * 119.99111 * 0.02562 * 21 19 18 45 45 H 0.96999 * 120.00469 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2044 2.6540 -0.0013 6 6 3.5102 3.8555 -0.0019 7 6 4.1973 5.0525 -0.0020 8 6 5.5906 5.0578 -0.0021 9 6 6.3283 6.3456 -0.0028 10 7 7.6593 6.5061 0.0030 11 7 7.8920 7.7747 -0.0037 12 7 6.7699 8.4056 -0.0041 13 1 6.6685 9.3703 -0.0046 14 7 5.8022 7.5545 -0.0035 15 6 6.2911 3.8530 -0.0015 16 6 5.6001 2.6535 0.0050 17 7 6.3006 1.4411 0.0119 18 6 7.7655 1.4415 0.0184 19 6 8.2683 0.0209 0.0257 20 8 7.4804 -0.9013 0.0250 21 7 9.5935 -0.2250 0.0319 22 6 10.0508 -1.5174 0.0380 23 1 9.3493 -2.3386 0.0374 24 6 11.4170 -1.7709 0.0439 25 7 12.2706 -0.7718 0.0431 26 14 12.0402 -3.5318 0.0515 27 1 10.8855 -4.4656 0.0505 28 1 12.8699 -3.7686 -1.1571 29 1 12.8607 -3.7613 1.2678 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9900 0.6025 -0.0006 38 1 2.4301 3.8540 -0.0023 39 1 3.6544 5.9861 -0.0029 40 1 7.3712 3.8552 -0.0011 41 1 5.8158 0.6009 0.0124 42 1 8.1327 1.9527 -0.8716 43 1 8.1248 1.9583 0.9084 44 1 10.2236 0.5125 0.0321 45 1 13.2244 -0.9487 0.0476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590638967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:46 Heat of formation + Delta-G solvation = 113.018934 kcal Electronic energy + Delta-G solvation = -28770.154412 eV Core-core repulsion = 24632.272387 eV Total energy + Delta-G solvation = -4137.882025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.38706 -39.82663 -38.29797 -36.59659 -35.26164 -34.29760 -33.97504 -33.51636 -32.49377 -31.35697 -29.77559 -29.16345 -26.70498 -26.03814 -24.69679 -24.30537 -23.58676 -22.32327 -21.12033 -20.84993 -19.54003 -19.06778 -18.08356 -17.63924 -17.08894 -16.47285 -16.42894 -15.69872 -15.55608 -14.90193 -14.73513 -14.47628 -14.38930 -14.07440 -13.83647 -13.69924 -13.64072 -13.33057 -13.03774 -12.81955 -12.62896 -12.14853 -12.13483 -12.10763 -11.83484 -11.59847 -11.45324 -11.28091 -11.25887 -11.16821 -11.14759 -10.95133 -10.87868 -10.39512 -10.29893 -9.79087 -9.67125 -9.60998 -8.58904 -8.07845 -7.95703 -6.65234 -6.49160 -3.90942 0.89390 1.30756 1.71366 2.24401 2.55340 3.11727 3.23424 3.28301 3.31359 3.67258 3.77214 3.87938 4.07327 4.15099 4.31159 4.62368 4.74486 4.92131 4.95884 5.02325 5.19302 5.26565 5.33488 5.36984 5.39222 5.45773 5.47932 5.61942 5.68575 5.74177 5.83811 5.89063 5.94935 5.99093 5.99230 6.16715 6.18849 6.29078 6.43078 6.68271 6.83466 7.16705 7.48270 7.57401 7.67013 7.96595 8.13794 8.20367 8.48555 9.07482 9.42599 9.90753 10.67843 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.006600 B = 0.003054 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4241.700362 B = 9167.189917 C =13377.831138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.129 3.871 4 N -0.749 5.749 5 C 0.174 3.826 6 C -0.165 4.165 7 C -0.089 4.089 8 C -0.036 4.036 9 C 0.238 3.762 10 N -0.269 5.269 11 N -0.055 5.055 12 N -0.236 5.236 13 H 0.472 0.528 14 N -0.306 5.306 15 C -0.121 4.121 16 C 0.162 3.838 17 N -0.729 5.729 18 C 0.116 3.884 19 C 0.431 3.569 20 O -0.598 6.598 21 N -0.551 5.551 22 C -0.304 4.304 23 H 0.105 0.895 24 C 0.026 3.974 25 N -0.894 5.894 26 Si 0.931 3.069 27 H -0.268 1.268 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.399 0.601 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.404 0.596 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.396 0.604 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.539 14.656 -0.112 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.005 3.995 4 N -0.382 5.382 5 C 0.068 3.932 6 C -0.189 4.189 7 C -0.112 4.112 8 C -0.042 4.042 9 C -0.041 4.041 10 N -0.142 5.142 11 N -0.050 5.050 12 N -0.081 5.081 13 H 0.325 0.675 14 N -0.158 5.158 15 C -0.148 4.148 16 C 0.056 3.944 17 N -0.364 5.364 18 C -0.012 4.012 19 C 0.216 3.784 20 O -0.485 6.485 21 N -0.186 5.186 22 C -0.433 4.433 23 H 0.123 0.877 24 C -0.177 4.177 25 N -0.535 5.535 26 Si 0.758 3.242 27 H -0.192 1.192 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.235 0.765 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.243 0.757 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.230 0.770 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.269 14.434 -0.108 23.283 hybrid contribution 0.486 -0.578 0.004 0.755 sum -17.783 13.856 -0.104 22.544 Atomic orbital electron populations 1.21667 0.94746 1.02114 1.02019 1.21727 0.96607 0.96231 1.03139 1.21316 0.80155 0.97123 1.00935 1.44573 1.05107 1.05291 1.83192 1.17516 0.88890 0.87025 0.99813 1.20205 0.99165 0.90001 1.09558 1.20552 0.91921 0.97666 1.01036 1.16657 0.91618 0.85973 1.09995 1.23771 0.87965 0.92468 0.99881 1.76141 1.14280 1.05886 1.17927 1.78907 1.10852 1.00396 1.14843 1.47695 1.01342 1.12226 1.46807 0.67477 1.74910 1.17686 0.99805 1.23401 1.20363 1.00133 0.88983 1.05343 1.17193 0.88715 0.86968 1.01488 1.44198 1.04675 1.04974 1.82538 1.20906 0.81233 0.96990 1.02093 1.19763 0.83672 0.89615 0.85309 1.90481 1.55210 1.45527 1.57270 1.41810 1.04760 1.09200 1.62781 1.19756 0.91357 0.84130 1.48100 0.87738 1.25310 0.95726 0.99798 0.96889 1.69617 1.03049 1.31302 1.49486 0.85780 0.78857 0.81762 0.77821 1.19188 1.20624 1.20628 0.92488 0.92484 0.92281 0.91188 0.91186 0.92406 0.92400 0.76494 0.85740 0.85759 0.84634 0.75693 0.90611 0.90616 0.77048 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.57 16 2 C -0.14 -1.09 6.05 -26.73 -0.16 -1.25 16 3 C 0.13 1.13 4.91 -4.04 -0.02 1.11 16 4 N -0.75 -8.58 5.72 -58.43 -0.33 -8.92 16 5 C 0.17 2.26 6.67 -83.49 -0.56 1.70 16 6 C -0.17 -1.89 9.29 -39.47 -0.37 -2.26 16 7 C -0.09 -1.05 9.69 -39.25 -0.38 -1.43 16 8 C -0.04 -0.50 5.88 -104.88 -0.62 -1.11 16 9 C 0.24 3.26 7.93 -156.29 -1.24 2.02 16 10 N -0.27 -3.94 12.23 32.15 0.39 -3.55 16 11 N -0.05 -0.67 13.47 60.35 0.81 0.15 16 12 N -0.24 -2.12 7.90 60.35 0.48 -1.64 16 13 H 0.47 1.78 8.96 -340.36 -3.05 -1.27 16 14 N -0.31 -3.51 12.07 32.17 0.39 -3.12 16 15 C -0.12 -1.77 8.96 -39.09 -0.35 -2.12 16 16 C 0.16 2.39 6.67 -83.55 -0.56 1.84 16 17 N -0.73 -11.95 5.70 -59.66 -0.34 -12.29 16 18 C 0.12 2.06 5.39 -5.19 -0.03 2.03 16 19 C 0.43 9.85 7.85 -10.98 -0.09 9.76 16 20 O -0.60 -15.38 15.24 5.54 0.08 -15.29 16 21 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 22 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 23 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 24 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 25 N -0.89 -23.98 13.05 55.50 0.72 -23.25 16 26 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.48 7.94 -51.93 -0.41 0.06 16 36 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 37 H 0.40 4.86 6.63 -40.82 -0.27 4.59 16 38 H 0.12 1.15 6.71 -52.48 -0.35 0.80 16 39 H 0.12 1.27 7.87 -52.49 -0.41 0.86 16 40 H 0.14 2.03 6.55 -52.48 -0.34 1.68 16 41 H 0.40 6.89 5.60 -40.82 -0.23 6.66 16 42 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 43 H 0.08 1.25 7.96 -51.93 -0.41 0.84 16 44 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -32.27 384.13 -9.58 -41.85 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -8.26 Total: 16.49 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -4.24 Total: 1.85 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: 2.06 Total: -66.32 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.08 Total: -15.29 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.27 -9.58 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590638967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.868 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds