Wall clock time and date at job start Wed Apr 1 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.39892 * 119.99511 * 179.97438 * 4 3 2 6 6 C 1.38763 * 119.97964 * 359.97438 * 5 4 3 7 7 C 1.38021 * 120.11998 * 179.97438 * 6 5 4 8 8 C 1.39334 * 120.07707 * 0.02734 * 7 6 5 9 9 C 1.48408 * 120.02542 * 179.97438 * 8 7 6 10 10 N 1.34065 * 126.68080 * 179.68387 * 9 8 7 11 11 N 1.28980 * 107.27087 * 179.83025 * 10 9 8 12 12 N 1.28738 * 108.94919 * 0.43403 * 11 10 9 13 13 H 0.96996 * 125.34238 * 179.71810 * 12 11 10 14 14 N 1.28871 * 109.31816 * 359.72272 * 12 11 10 15 15 C 1.39368 * 119.95476 * 359.97402 * 8 7 6 16 16 C 1.38435 * 119.88052 * 359.72248 * 15 8 7 17 17 N 1.40018 * 120.03833 * 180.29703 * 16 15 8 18 18 C 1.46498 * 120.00114 * 0.27828 * 17 16 15 19 19 C 1.50700 * 109.47232 * 179.97438 * 18 17 16 20 20 O 1.21295 * 120.00385 * 0.02562 * 19 18 17 21 21 N 1.34785 * 120.00411 * 179.97438 * 19 18 17 22 22 C 1.37085 * 120.00152 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00679 * 0.02562 * 22 21 19 24 24 C 1.38956 * 119.99810 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00051 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00020 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47053 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47477 * 120.00227 * 26 24 22 29 29 H 1.48503 * 109.46971 * 240.00092 * 26 24 22 30 30 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 34 34 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 37 37 H 0.96992 * 119.99966 * 359.97438 * 4 3 2 38 38 H 1.08003 * 119.94403 * 359.97438 * 6 5 4 39 39 H 1.07999 * 119.96353 * 179.97438 * 7 6 5 40 40 H 1.08004 * 120.05678 * 180.02562 * 15 8 7 41 41 H 0.97000 * 120.00052 * 180.27516 * 17 16 15 42 42 H 1.09002 * 109.47192 * 299.99759 * 18 17 16 43 43 H 1.09005 * 109.47242 * 59.99748 * 18 17 16 44 44 H 0.97003 * 119.99111 * 0.02562 * 21 19 18 45 45 H 0.96999 * 120.00469 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2044 2.6540 -0.0013 6 6 3.5102 3.8555 -0.0019 7 6 4.1973 5.0525 -0.0020 8 6 5.5906 5.0578 -0.0021 9 6 6.3283 6.3456 -0.0028 10 7 7.6593 6.5061 0.0030 11 7 7.8920 7.7747 -0.0037 12 7 6.7699 8.4056 -0.0041 13 1 6.6685 9.3703 -0.0046 14 7 5.8022 7.5545 -0.0035 15 6 6.2911 3.8530 -0.0015 16 6 5.6001 2.6535 0.0050 17 7 6.3006 1.4411 0.0119 18 6 7.7655 1.4415 0.0184 19 6 8.2683 0.0209 0.0257 20 8 7.4804 -0.9013 0.0250 21 7 9.5935 -0.2250 0.0319 22 6 10.0508 -1.5174 0.0380 23 1 9.3493 -2.3386 0.0374 24 6 11.4170 -1.7709 0.0439 25 7 12.2706 -0.7718 0.0431 26 14 12.0402 -3.5318 0.0515 27 1 10.8855 -4.4656 0.0505 28 1 12.8699 -3.7686 -1.1571 29 1 12.8607 -3.7613 1.2678 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9900 0.6025 -0.0006 38 1 2.4301 3.8540 -0.0023 39 1 3.6544 5.9861 -0.0029 40 1 7.3712 3.8552 -0.0011 41 1 5.8158 0.6009 0.0124 42 1 8.1327 1.9527 -0.8716 43 1 8.1248 1.9583 0.9084 44 1 10.2236 0.5125 0.0321 45 1 13.2244 -0.9487 0.0476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590638967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:45 Heat of formation + Delta-G solvation = 89.430528 kcal Electronic energy + Delta-G solvation = -28771.177282 eV Core-core repulsion = 24632.272387 eV Total energy + Delta-G solvation = -4138.904895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.30953 -40.93406 -40.05331 -37.42266 -36.58948 -35.84346 -35.20191 -34.43082 -33.36648 -33.31852 -30.94222 -30.13919 -28.17368 -26.84359 -26.20617 -25.47025 -24.51195 -23.20156 -22.06605 -21.84039 -21.13939 -20.17121 -19.90607 -18.85382 -18.00255 -17.60013 -17.52954 -17.06530 -16.48144 -16.41887 -16.24551 -16.00415 -15.50795 -15.26600 -15.12139 -14.80106 -14.72103 -14.48426 -13.99541 -13.88325 -13.61227 -13.53840 -13.39475 -13.34657 -12.95473 -12.92729 -12.64877 -12.44043 -12.34686 -12.13796 -12.13154 -12.11037 -11.93419 -11.82979 -11.70628 -11.56887 -10.88423 -10.56780 -10.50914 -10.08080 -8.98835 -8.50090 -7.71280 -5.99934 -0.04901 0.34125 0.70839 1.35045 1.41957 1.54220 1.55758 1.56135 1.93960 2.18123 2.34306 2.62701 2.88780 3.06022 3.17383 3.22048 3.36657 3.94813 4.02225 4.13177 4.22467 4.28855 4.37591 4.46116 4.47468 4.51931 4.53278 4.62773 4.69138 4.77615 4.78560 4.88000 5.02144 5.16416 5.19996 5.29130 5.37920 5.38512 5.42017 5.69259 5.74155 5.84950 5.90778 6.15292 6.49147 6.55584 6.64071 6.92352 7.05599 7.26443 7.47145 7.98288 8.67125 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.006600 B = 0.003054 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4241.700362 B = 9167.189917 C =13377.831138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.127 3.873 4 N -0.751 5.751 5 C 0.173 3.827 6 C -0.160 4.160 7 C -0.075 4.075 8 C -0.051 4.051 9 C 0.225 3.775 10 N -0.305 5.305 11 N -0.063 5.063 12 N -0.203 5.203 13 H 0.493 0.507 14 N -0.298 5.298 15 C -0.128 4.128 16 C 0.139 3.861 17 N -0.737 5.737 18 C 0.133 3.867 19 C 0.433 3.567 20 O -0.628 6.628 21 N -0.562 5.562 22 C -0.336 4.336 23 H 0.083 0.917 24 C -0.011 4.011 25 N -0.916 5.916 26 Si 0.995 3.005 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.393 0.607 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.125 0.875 41 H 0.400 0.600 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.399 0.601 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.178 16.013 -0.118 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.004 3.996 4 N -0.382 5.382 5 C 0.066 3.934 6 C -0.184 4.184 7 C -0.098 4.098 8 C -0.057 4.057 9 C -0.055 4.055 10 N -0.177 5.177 11 N -0.058 5.058 12 N -0.054 5.054 13 H 0.351 0.649 14 N -0.151 5.151 15 C -0.155 4.155 16 C 0.035 3.965 17 N -0.373 5.373 18 C 0.004 3.996 19 C 0.220 3.780 20 O -0.516 6.516 21 N -0.197 5.197 22 C -0.465 4.465 23 H 0.101 0.899 24 C -0.211 4.211 25 N -0.556 5.556 26 Si 0.818 3.182 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.228 0.772 38 H 0.171 0.829 39 H 0.163 0.837 40 H 0.142 0.858 41 H 0.237 0.763 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.233 0.767 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.926 15.854 -0.114 25.464 hybrid contribution 0.863 -0.849 0.005 1.211 sum -19.064 15.005 -0.109 24.261 Atomic orbital electron populations 1.21648 0.93300 1.02509 1.02738 1.21702 0.97781 0.95622 1.02352 1.21497 0.78458 0.97826 1.01852 1.44775 1.06217 1.04607 1.82602 1.17704 0.88371 0.88155 0.99185 1.20498 1.00472 0.89049 1.08383 1.20810 0.91210 0.98699 0.99066 1.16779 0.92457 0.85687 1.10786 1.23828 0.87841 0.93092 1.00693 1.76123 1.15159 1.06976 1.19454 1.78842 1.11625 0.99989 1.15393 1.47758 1.00270 1.13153 1.44225 0.64860 1.74861 1.17869 0.99347 1.23041 1.20342 0.99778 0.89575 1.05764 1.17314 0.89571 0.86163 1.03403 1.44070 1.03750 1.05494 1.83944 1.20710 0.82412 0.93181 1.03254 1.20601 0.82841 0.91453 0.83077 1.90452 1.55844 1.47316 1.57974 1.41861 1.05561 1.08609 1.63687 1.19731 0.91792 0.84738 1.50279 0.89889 1.26098 0.95354 1.03751 0.95909 1.69681 1.03477 1.32966 1.49491 0.84843 0.78088 0.76886 0.78347 1.19572 1.19585 1.19589 0.91756 0.91745 0.92112 0.92010 0.92020 0.91328 0.91333 0.77201 0.82944 0.83697 0.85751 0.76264 0.89376 0.89388 0.76709 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.14 -2.00 6.05 30.60 0.19 -1.81 16 3 C 0.13 1.98 4.91 86.38 0.42 2.40 16 4 N -0.75 -16.53 5.72 -338.77 -1.94 -18.47 16 5 C 0.17 4.29 6.67 38.30 0.26 4.54 16 6 C -0.16 -3.26 9.29 22.34 0.21 -3.05 16 7 C -0.08 -1.60 9.69 22.48 0.22 -1.38 16 8 C -0.05 -1.34 5.88 -20.03 -0.12 -1.45 16 9 C 0.22 5.91 7.93 137.35 1.09 7.00 16 10 N -0.30 -8.82 12.23 -52.20 -0.64 -9.46 16 11 N -0.06 -1.48 13.47 37.02 0.50 -0.99 16 12 N -0.20 -3.25 7.90 37.02 0.29 -2.96 16 13 H 0.49 2.49 8.96 -347.54 -3.12 -0.62 16 14 N -0.30 -6.23 12.07 -52.15 -0.63 -6.86 16 15 C -0.13 -3.74 8.96 22.59 0.20 -3.54 16 16 C 0.14 4.10 6.67 38.20 0.25 4.36 16 17 N -0.74 -24.60 5.70 -342.67 -1.95 -26.55 16 18 C 0.13 4.81 5.39 85.63 0.46 5.27 16 19 C 0.43 20.40 7.85 87.66 0.69 21.08 16 20 O -0.63 -33.36 15.24 -3.08 -0.05 -33.40 16 21 N -0.56 -28.69 5.29 -306.97 -1.62 -30.31 16 22 C -0.34 -18.86 9.68 84.04 0.81 -18.05 16 23 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 24 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 25 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 26 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 0.95 7.94 -2.39 -0.02 0.93 16 36 H 0.07 0.95 7.95 -2.39 -0.02 0.93 16 37 H 0.39 9.63 6.63 -92.71 -0.61 9.02 16 38 H 0.15 2.22 6.71 -2.91 -0.02 2.20 16 39 H 0.15 2.47 7.87 -2.91 -0.02 2.45 16 40 H 0.12 3.82 6.55 -2.91 -0.02 3.80 16 41 H 0.40 14.02 5.60 -92.71 -0.52 13.50 16 42 H 0.09 2.97 7.94 -2.39 -0.02 2.95 16 43 H 0.09 2.97 7.96 -2.38 -0.02 2.95 16 44 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 45 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -70.19 384.13 -1.75 -71.94 By element: Atomic # 1 Polarization: 51.06 SS G_CDS: -3.89 Total: 47.17 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 5.86 Total: 14.43 kcal Atomic # 7 Polarization: -138.95 SS G_CDS: -5.71 Total: -144.66 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.05 Total: -33.40 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.19 -1.75 -71.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590638967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.367 kcal (2) G-P(sol) polarization free energy of solvation -70.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds