Wall clock time and date at job start Wed Apr 1 2020 03:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47414 * 2 1 4 4 H 1.09006 * 110.59245 * 308.77242 * 3 2 1 5 5 C 1.54934 * 110.67215 * 185.76688 * 3 2 1 6 6 H 1.09003 * 110.87222 * 322.40852 * 5 3 2 7 7 N 1.46496 * 110.72413 * 85.62226 * 5 3 2 8 8 C 1.34776 * 119.99989 * 199.95536 * 7 5 3 9 9 O 1.21283 * 119.99891 * 359.97438 * 8 7 5 10 10 C 1.50693 * 120.00395 * 180.02562 * 8 7 5 11 11 H 1.09010 * 115.54497 * 325.66662 * 10 8 7 12 12 C 1.52991 * 117.50523 * 111.37626 * 10 8 7 13 13 C 1.52992 * 60.00088 * 107.49171 * 12 10 8 14 14 F 1.39899 * 117.50141 * 252.50888 * 13 12 10 15 15 F 1.39901 * 117.51902 * 107.48722 * 13 12 10 16 16 C 1.54594 * 102.92014 * 203.98650 * 5 3 2 17 17 C 1.53993 * 105.14413 * 21.95041 * 16 5 3 18 18 N 1.47905 * 107.22357 * 1.13153 * 17 16 5 19 19 C 1.46895 * 110.99871 * 214.25106 * 18 17 16 20 20 C 1.50699 * 109.47288 * 302.79776 * 19 18 17 21 21 O 1.21292 * 120.00194 * 354.16939 * 20 19 18 22 22 N 1.34774 * 120.00343 * 174.17297 * 20 19 18 23 23 C 1.37099 * 120.00326 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99814 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99726 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00648 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99463 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.47213 * 90.00137 * 27 25 23 29 29 H 1.48503 * 109.47102 * 209.99648 * 27 25 23 30 30 H 1.48502 * 109.47532 * 329.99889 * 27 25 23 31 31 H 1.09000 * 109.46699 * 286.35757 * 1 2 3 32 32 H 1.08997 * 109.47344 * 46.36045 * 1 2 3 33 33 H 1.09005 * 109.46836 * 166.36384 * 1 2 3 34 34 H 1.09003 * 109.47541 * 240.00015 * 2 1 3 35 35 H 1.09001 * 109.47367 * 119.99842 * 2 1 3 36 36 H 0.96993 * 120.00139 * 19.95924 * 7 5 3 37 37 H 1.09004 * 117.50226 * 214.98368 * 12 10 8 38 38 H 1.09006 * 117.50097 * 359.97438 * 12 10 8 39 39 H 1.09008 * 110.30578 * 263.04095 * 16 5 3 40 40 H 1.08996 * 110.39469 * 140.91679 * 16 5 3 41 41 H 1.09003 * 109.91280 * 120.57748 * 17 16 5 42 42 H 1.08999 * 109.92084 * 241.67897 * 17 16 5 43 43 H 1.09001 * 109.47018 * 62.79630 * 19 18 17 44 44 H 1.09000 * 109.47381 * 182.79680 * 19 18 17 45 45 H 0.97004 * 120.00124 * 359.97438 * 22 20 19 46 46 H 0.96992 * 120.00317 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5654 2.0170 -0.7956 5 6 3.5822 1.4773 -0.1457 6 1 4.0431 0.6589 0.4074 7 7 3.9707 1.4302 -1.5574 8 6 5.2174 1.0504 -1.9009 9 8 6.0177 0.7480 -1.0412 10 6 5.6174 1.0025 -3.3529 11 1 4.8303 0.7093 -4.0479 12 6 6.6419 2.0301 -3.8379 13 6 7.0464 0.5633 -3.6780 14 9 7.8819 0.2369 -2.6045 15 9 7.2432 -0.1838 -4.8444 16 6 3.9578 2.8401 0.4801 17 6 2.7769 3.1991 1.4011 18 7 1.8049 2.0872 1.3204 19 6 0.4268 2.5836 1.4310 20 6 0.2690 3.3442 2.7223 21 8 1.1780 3.3722 3.5248 22 7 -0.8824 3.9934 2.9857 23 6 -1.0258 4.6859 4.1602 24 1 -0.2163 4.7108 4.8747 25 6 -2.2127 5.3556 4.4313 26 7 -3.1975 5.3258 3.5618 27 14 -2.4083 6.2984 6.0320 28 1 -1.9517 7.6986 5.8409 29 1 -3.8370 6.2948 6.4373 30 1 -1.5919 5.6517 7.0905 31 1 -0.3633 0.2894 0.9861 32 1 -0.3634 0.7092 -0.7437 33 1 -0.3633 -0.9988 -0.2423 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.3308 1.6725 -2.2448 37 1 6.5290 2.4134 -4.8520 38 1 7.0264 2.7412 -3.1067 39 1 4.0735 3.5947 -0.2980 40 1 4.8764 2.7516 1.0599 41 1 3.1273 3.3123 2.4270 42 1 2.3109 4.1248 1.0637 43 1 0.2101 3.2441 0.5914 44 1 -0.2649 1.7413 1.4186 45 1 -1.6094 3.9714 2.3438 46 1 -4.0259 5.7936 3.7510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691974183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:34 Heat of formation + Delta-G solvation = -125.966879 kcal Electronic energy + Delta-G solvation = -30563.432330 eV Core-core repulsion = 25932.205165 eV Total energy + Delta-G solvation = -4631.227165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.03925 -47.67523 -40.52317 -39.29009 -37.72255 -36.05799 -34.68153 -33.93746 -33.25782 -31.40013 -30.87158 -27.89085 -26.80348 -25.04370 -24.09139 -23.02090 -22.68464 -21.25933 -20.80823 -20.05712 -19.12234 -18.64087 -17.90300 -17.48399 -16.86896 -16.54296 -16.17491 -15.84152 -15.58732 -15.20860 -14.92002 -14.63979 -14.31242 -14.30038 -14.03786 -13.99011 -13.90549 -13.74877 -13.43611 -13.17176 -13.00414 -12.97120 -12.92185 -12.31879 -12.29783 -11.80436 -11.60172 -11.50948 -11.33644 -11.25867 -11.08251 -10.91415 -10.66732 -10.59826 -10.41868 -10.35209 -10.24326 -10.16824 -9.51706 -9.32438 -8.44429 -8.05355 -7.96096 -6.44153 -3.84850 1.86461 2.37075 2.60322 2.92803 3.15903 3.24935 3.30981 3.69422 3.80922 3.87799 4.04675 4.12337 4.22024 4.34024 4.42900 4.61001 4.83861 4.98078 5.01567 5.07004 5.15294 5.18053 5.21082 5.22848 5.31437 5.33957 5.57120 5.63449 5.70655 5.74327 5.89814 5.93751 5.95870 6.10979 6.19574 6.23189 6.31188 6.39129 6.56509 7.07558 7.15716 7.21120 7.53073 7.83137 8.03676 8.59043 9.15835 9.51561 10.03267 10.73571 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.002000 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.754566 B =13993.948340 C =14468.476521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 C 0.058 3.942 4 H 0.055 0.945 5 C 0.147 3.853 6 H 0.106 0.894 7 N -0.712 5.712 8 C 0.541 3.459 9 O -0.515 6.515 10 C -0.197 4.197 11 H 0.149 0.851 12 C -0.148 4.148 13 C 0.230 3.770 14 F -0.137 7.137 15 F -0.157 7.157 16 C -0.142 4.142 17 C 0.048 3.952 18 N -0.482 5.482 19 C 0.028 3.972 20 C 0.441 3.559 21 O -0.578 6.578 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.269 1.269 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.401 0.599 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.041 0.959 43 H 0.046 0.954 44 H 0.103 0.897 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.138 -7.682 -19.810 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.146 4.146 3 C -0.051 4.051 4 H 0.073 0.927 5 C 0.042 3.958 6 H 0.124 0.876 7 N -0.363 5.363 8 C 0.325 3.675 9 O -0.389 6.389 10 C -0.219 4.219 11 H 0.167 0.833 12 C -0.186 4.186 13 C 0.193 3.807 14 F -0.117 7.117 15 F -0.137 7.137 16 C -0.182 4.182 17 C -0.080 4.080 18 N -0.206 5.206 19 C -0.104 4.104 20 C 0.226 3.774 21 O -0.462 6.462 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.236 0.764 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.121 0.879 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.234 -8.198 -18.160 23.919 hybrid contribution -1.217 1.119 -0.771 1.824 sum 12.016 -7.078 -18.931 23.514 Atomic orbital electron populations 1.22023 0.95668 1.01419 1.02568 1.21443 0.96132 0.94623 1.02364 1.23114 0.93317 0.96609 0.92079 0.92670 1.21938 0.94339 0.99242 0.80245 0.87641 1.45874 1.13022 1.68507 1.08942 1.19182 0.82497 0.77507 0.88343 1.90829 1.50411 1.47071 1.50626 1.23658 0.94977 1.05138 0.98122 0.83322 1.24292 0.97201 0.91287 1.05820 1.19448 0.91073 0.93805 0.76420 1.93144 1.72053 1.93538 1.52980 1.93057 1.95646 1.78458 1.46547 1.22888 0.99915 0.96155 0.99197 1.22836 0.91355 0.92180 1.01653 1.64561 1.02918 1.26123 1.27045 1.22424 0.91259 0.99551 0.97120 1.19731 0.84410 0.84430 0.88782 1.90515 1.40778 1.65364 1.49506 1.41858 1.13699 1.44971 1.19548 1.19695 1.00752 1.26084 0.96228 0.87909 1.25256 0.95204 0.98195 0.99298 1.69604 1.05299 1.43685 1.35765 0.85865 0.77397 0.79581 0.81500 1.20447 1.20925 1.19386 0.91226 0.92943 0.92799 0.91926 0.90514 0.76438 0.84816 0.85261 0.91529 0.90402 0.88077 0.94018 0.93630 0.87917 0.77544 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 8.82 37.16 0.33 -1.32 16 2 C -0.11 -1.13 5.67 -26.73 -0.15 -1.28 16 3 C 0.06 0.67 2.07 -65.63 -0.14 0.53 16 4 H 0.06 0.57 7.70 -51.93 -0.40 0.17 16 5 C 0.15 1.66 2.78 -66.07 -0.18 1.48 16 6 H 0.11 1.41 7.61 -51.93 -0.40 1.01 16 7 N -0.71 -5.97 5.14 -52.01 -0.27 -6.23 16 8 C 0.54 5.34 7.61 -10.99 -0.08 5.26 16 9 O -0.51 -7.41 14.87 5.56 0.08 -7.33 16 10 C -0.20 -1.28 6.17 -91.78 -0.57 -1.84 16 11 H 0.15 0.51 8.14 -51.92 -0.42 0.08 16 12 C -0.15 -0.75 10.20 -26.74 -0.27 -1.03 16 13 C 0.23 1.96 5.19 -26.74 -0.14 1.82 16 14 F -0.14 -1.66 15.71 2.25 0.04 -1.63 16 15 F -0.16 -1.37 17.60 2.25 0.04 -1.33 16 16 C -0.14 -1.80 6.67 -25.38 -0.17 -1.97 16 17 C 0.05 0.76 5.31 -2.75 -0.01 0.75 16 18 N -0.48 -7.56 4.86 -223.83 -1.09 -8.65 16 19 C 0.03 0.47 4.90 -4.98 -0.02 0.45 16 20 C 0.44 10.12 7.35 -10.99 -0.08 10.04 16 21 O -0.58 -15.19 13.96 5.55 0.08 -15.11 16 22 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 23 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 24 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 27 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 31 H 0.07 0.85 5.60 -51.93 -0.29 0.56 16 32 H 0.05 0.50 8.00 -51.93 -0.42 0.08 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 2.17 8.52 -40.82 -0.35 1.82 16 37 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.75 8.05 -51.92 -0.42 0.33 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.10 1.93 6.96 -51.93 -0.36 1.57 16 42 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 43 H 0.05 0.71 8.00 -51.93 -0.42 0.29 16 44 H 0.10 1.60 4.62 -51.93 -0.24 1.36 16 45 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -33.34 382.40 -7.92 -41.26 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.48 Total: 9.86 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -1.73 Total: 5.04 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.69 Total: -52.37 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.16 Total: -22.44 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.34 -7.92 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691974183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.705 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds