Wall clock time and date at job start Wed Apr 1 2020 03:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47414 * 2 1 4 4 H 1.09006 * 110.59245 * 308.77242 * 3 2 1 5 5 C 1.54934 * 110.67215 * 185.76688 * 3 2 1 6 6 H 1.09003 * 110.87222 * 322.40852 * 5 3 2 7 7 N 1.46496 * 110.72413 * 85.62226 * 5 3 2 8 8 C 1.34776 * 119.99989 * 199.95536 * 7 5 3 9 9 O 1.21283 * 119.99891 * 359.97438 * 8 7 5 10 10 C 1.50693 * 120.00395 * 180.02562 * 8 7 5 11 11 H 1.09010 * 115.54497 * 325.66662 * 10 8 7 12 12 C 1.52991 * 117.50523 * 111.37626 * 10 8 7 13 13 C 1.52992 * 60.00088 * 107.49171 * 12 10 8 14 14 F 1.39899 * 117.50141 * 252.50888 * 13 12 10 15 15 F 1.39901 * 117.51902 * 107.48722 * 13 12 10 16 16 C 1.54594 * 102.92014 * 203.98650 * 5 3 2 17 17 C 1.53993 * 105.14413 * 21.95041 * 16 5 3 18 18 N 1.47905 * 107.22357 * 1.13153 * 17 16 5 19 19 C 1.46895 * 110.99871 * 214.25106 * 18 17 16 20 20 C 1.50699 * 109.47288 * 302.79776 * 19 18 17 21 21 O 1.21292 * 120.00194 * 354.16939 * 20 19 18 22 22 N 1.34774 * 120.00343 * 174.17297 * 20 19 18 23 23 C 1.37099 * 120.00326 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99814 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99726 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00648 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99463 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.47213 * 90.00137 * 27 25 23 29 29 H 1.48503 * 109.47102 * 209.99648 * 27 25 23 30 30 H 1.48502 * 109.47532 * 329.99889 * 27 25 23 31 31 H 1.09000 * 109.46699 * 286.35757 * 1 2 3 32 32 H 1.08997 * 109.47344 * 46.36045 * 1 2 3 33 33 H 1.09005 * 109.46836 * 166.36384 * 1 2 3 34 34 H 1.09003 * 109.47541 * 240.00015 * 2 1 3 35 35 H 1.09001 * 109.47367 * 119.99842 * 2 1 3 36 36 H 0.96993 * 120.00139 * 19.95924 * 7 5 3 37 37 H 1.09004 * 117.50226 * 214.98368 * 12 10 8 38 38 H 1.09006 * 117.50097 * 359.97438 * 12 10 8 39 39 H 1.09008 * 110.30578 * 263.04095 * 16 5 3 40 40 H 1.08996 * 110.39469 * 140.91679 * 16 5 3 41 41 H 1.09003 * 109.91280 * 120.57748 * 17 16 5 42 42 H 1.08999 * 109.92084 * 241.67897 * 17 16 5 43 43 H 1.09001 * 109.47018 * 62.79630 * 19 18 17 44 44 H 1.09000 * 109.47381 * 182.79680 * 19 18 17 45 45 H 0.97004 * 120.00124 * 359.97438 * 22 20 19 46 46 H 0.96992 * 120.00317 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5654 2.0170 -0.7956 5 6 3.5822 1.4773 -0.1457 6 1 4.0431 0.6589 0.4074 7 7 3.9707 1.4302 -1.5574 8 6 5.2174 1.0504 -1.9009 9 8 6.0177 0.7480 -1.0412 10 6 5.6174 1.0025 -3.3529 11 1 4.8303 0.7093 -4.0479 12 6 6.6419 2.0301 -3.8379 13 6 7.0464 0.5633 -3.6780 14 9 7.8819 0.2369 -2.6045 15 9 7.2432 -0.1838 -4.8444 16 6 3.9578 2.8401 0.4801 17 6 2.7769 3.1991 1.4011 18 7 1.8049 2.0872 1.3204 19 6 0.4268 2.5836 1.4310 20 6 0.2690 3.3442 2.7223 21 8 1.1780 3.3722 3.5248 22 7 -0.8824 3.9934 2.9857 23 6 -1.0258 4.6859 4.1602 24 1 -0.2163 4.7108 4.8747 25 6 -2.2127 5.3556 4.4313 26 7 -3.1975 5.3258 3.5618 27 14 -2.4083 6.2984 6.0320 28 1 -1.9517 7.6986 5.8409 29 1 -3.8370 6.2948 6.4373 30 1 -1.5919 5.6517 7.0905 31 1 -0.3633 0.2894 0.9861 32 1 -0.3634 0.7092 -0.7437 33 1 -0.3633 -0.9988 -0.2423 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.3308 1.6725 -2.2448 37 1 6.5290 2.4134 -4.8520 38 1 7.0264 2.7412 -3.1067 39 1 4.0735 3.5947 -0.2980 40 1 4.8764 2.7516 1.0599 41 1 3.1273 3.3123 2.4270 42 1 2.3109 4.1248 1.0637 43 1 0.2101 3.2441 0.5914 44 1 -0.2649 1.7413 1.4186 45 1 -1.6094 3.9714 2.3438 46 1 -4.0259 5.7936 3.7510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691974183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:33 Heat of formation + Delta-G solvation = -151.265399 kcal Electronic energy + Delta-G solvation = -30564.529356 eV Core-core repulsion = 25932.205165 eV Total energy + Delta-G solvation = -4632.324191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.67880 -48.36097 -41.47479 -40.51819 -39.28717 -36.67310 -36.04918 -35.49127 -34.25817 -33.29757 -32.15718 -28.89605 -28.23342 -26.37630 -25.24979 -23.77867 -23.54282 -22.19304 -21.75718 -21.13487 -20.73297 -19.83935 -19.30925 -18.22877 -17.81943 -17.50689 -17.27866 -16.93732 -16.69532 -16.47107 -16.09346 -15.89951 -15.73254 -15.46472 -15.24012 -15.01069 -14.65521 -14.59512 -14.40959 -14.39955 -14.00789 -13.94095 -13.85068 -13.54055 -13.46960 -13.45418 -12.97559 -12.69320 -12.50046 -12.40671 -12.32018 -12.23824 -12.13124 -11.82933 -11.63060 -11.54346 -11.39717 -11.24355 -10.94010 -10.28697 -10.12400 -10.00198 -9.33625 -8.46642 -5.94710 1.18649 1.37024 1.41216 1.53482 1.70068 2.05318 2.05880 2.26442 2.31187 2.83047 3.19996 3.22004 3.25883 3.35352 3.41863 3.54995 3.76375 3.87505 4.00160 4.10074 4.19631 4.29448 4.33703 4.39039 4.44039 4.50216 4.56761 4.60710 4.66614 4.72453 4.78361 4.88932 4.97617 5.05956 5.16044 5.19679 5.33542 5.39366 5.41433 5.51127 5.84390 5.96705 6.10765 6.44141 6.61213 7.13543 7.13837 7.56720 8.13069 8.70699 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.002000 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.754566 B =13993.948340 C =14468.476521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C 0.066 3.934 4 H 0.084 0.916 5 C 0.158 3.842 6 H 0.082 0.918 7 N -0.693 5.693 8 C 0.537 3.463 9 O -0.567 6.567 10 C -0.183 4.183 11 H 0.189 0.811 12 C -0.117 4.117 13 C 0.191 3.809 14 F -0.168 7.168 15 F -0.161 7.161 16 C -0.132 4.132 17 C 0.052 3.948 18 N -0.504 5.504 19 C 0.042 3.958 20 C 0.437 3.563 21 O -0.617 6.617 22 N -0.573 5.573 23 C -0.331 4.331 24 H 0.077 0.923 25 C -0.012 4.012 26 N -0.919 5.919 27 Si 0.990 3.010 28 H -0.271 1.271 29 H -0.270 1.270 30 H -0.275 1.275 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.421 0.579 37 H 0.172 0.828 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.123 0.877 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.986 -7.394 -22.903 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.042 4.042 4 H 0.101 0.899 5 C 0.051 3.949 6 H 0.100 0.900 7 N -0.346 5.346 8 C 0.323 3.677 9 O -0.445 6.445 10 C -0.205 4.205 11 H 0.207 0.793 12 C -0.154 4.154 13 C 0.154 3.846 14 F -0.149 7.149 15 F -0.142 7.142 16 C -0.171 4.171 17 C -0.076 4.076 18 N -0.229 5.229 19 C -0.088 4.088 20 C 0.225 3.775 21 O -0.503 6.503 22 N -0.211 5.211 23 C -0.461 4.461 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.196 1.196 29 H -0.195 1.195 30 H -0.200 1.200 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.260 0.740 37 H 0.190 0.810 38 H 0.144 0.856 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.140 0.860 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.044 -7.910 -21.313 25.727 hybrid contribution -0.813 0.980 0.191 1.287 sum 11.231 -6.930 -21.122 24.906 Atomic orbital electron populations 1.21999 0.95218 1.02709 1.01603 1.21445 0.96426 0.93718 1.02649 1.23180 0.93371 0.97176 0.90520 0.89873 1.21587 0.94124 0.97399 0.81741 0.89990 1.45627 1.13149 1.67786 1.08019 1.19779 0.82083 0.76296 0.89515 1.90826 1.51907 1.49263 1.52480 1.23720 0.95092 1.05399 0.96240 0.79339 1.24480 0.94268 0.89027 1.07658 1.20008 0.92226 0.96431 0.75957 1.93072 1.73178 1.94001 1.54615 1.93038 1.95757 1.78907 1.46472 1.22768 0.97708 0.97666 0.98950 1.22622 0.92693 0.92293 0.99980 1.64469 1.01995 1.25941 1.30498 1.22307 0.92643 0.99789 0.94098 1.20824 0.83028 0.83376 0.90287 1.90500 1.41899 1.66411 1.51481 1.41911 1.14546 1.45506 1.19122 1.19617 1.00874 1.28243 0.97328 0.90537 1.25986 0.94498 0.98445 1.02253 1.69656 1.05555 1.43868 1.36902 0.84971 0.77734 0.78333 0.77562 1.19647 1.19497 1.20025 0.93563 0.91382 0.91445 0.89320 0.92600 0.74017 0.81000 0.85573 0.89405 0.91852 0.92421 0.94789 0.91154 0.85994 0.76992 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 8.82 71.98 0.63 -2.17 16 2 C -0.10 -1.93 5.67 30.59 0.17 -1.76 16 3 C 0.07 1.35 2.07 45.21 0.09 1.45 16 4 H 0.08 1.32 7.70 -2.38 -0.02 1.30 16 5 C 0.16 3.34 2.78 46.20 0.13 3.47 16 6 H 0.08 2.20 7.61 -2.39 -0.02 2.18 16 7 N -0.69 -9.50 5.14 -436.86 -2.25 -11.75 16 8 C 0.54 9.53 7.61 87.65 0.67 10.20 16 9 O -0.57 -16.33 14.87 -3.04 -0.05 -16.38 16 10 C -0.18 -1.76 6.17 -11.55 -0.07 -1.84 16 11 H 0.19 0.27 8.14 -2.38 -0.02 0.25 16 12 C -0.12 -0.79 10.20 30.59 0.31 -0.48 16 13 C 0.19 2.95 5.19 30.59 0.16 3.11 16 14 F -0.17 -4.17 15.71 44.97 0.71 -3.47 16 15 F -0.16 -2.56 17.60 44.97 0.79 -1.77 16 16 C -0.13 -3.28 6.67 31.47 0.21 -3.07 16 17 C 0.05 1.72 5.31 86.45 0.46 2.18 16 18 N -0.50 -15.61 4.86 -862.07 -4.19 -19.80 16 19 C 0.04 1.40 4.90 85.56 0.42 1.82 16 20 C 0.44 20.54 7.35 87.66 0.64 21.18 16 21 O -0.62 -33.99 13.96 -3.07 -0.04 -34.03 16 22 N -0.57 -29.00 5.29 -306.99 -1.62 -30.62 16 23 C -0.33 -18.69 9.68 84.04 0.81 -17.87 16 24 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 25 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 26 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 27 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 29 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 30 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 31 H 0.05 1.04 5.60 -2.39 -0.01 1.03 16 32 H 0.07 1.01 8.00 -2.39 -0.02 0.99 16 33 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.42 2.51 8.52 -92.71 -0.79 1.72 16 37 H 0.17 -0.13 8.14 -2.38 -0.02 -0.14 16 38 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.09 1.81 8.05 -2.38 -0.02 1.79 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 2.37 6.96 -2.39 -0.02 2.36 16 42 H 0.03 1.14 7.69 -2.39 -0.02 1.12 16 43 H 0.07 2.00 8.00 -2.39 -0.02 1.98 16 44 H 0.12 3.63 4.62 -2.39 -0.01 3.62 16 45 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 46 H 0.28 13.82 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -77.94 382.40 0.29 -77.65 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.48 Total: 27.86 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 5.11 Total: 16.05 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -7.78 Total: -110.76 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -0.09 Total: -50.41 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 1.50 Total: -5.24 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -77.94 0.29 -77.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691974183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.613 kcal (2) G-P(sol) polarization free energy of solvation -77.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds