Wall clock time and date at job start Wed Apr 1 2020 03:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46664 * 2 1 4 4 N 1.46908 * 109.47095 * 179.97438 * 3 2 1 5 5 C 1.46900 * 110.99994 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46661 * 180.02562 * 5 4 3 7 7 O 1.21290 * 120.00159 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99330 * 180.02562 * 6 5 4 9 9 C 1.37104 * 119.99464 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99824 * 359.97438 * 9 8 6 11 11 C 1.38945 * 119.99679 * 179.97438 * 9 8 6 12 12 N 1.31412 * 120.00468 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99923 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46934 * 90.00227 * 13 11 9 15 15 H 1.48493 * 109.47140 * 210.00171 * 13 11 9 16 16 H 1.48501 * 109.46958 * 330.00527 * 13 11 9 17 17 N 1.46504 * 109.46989 * 119.99747 * 2 1 3 18 18 C 1.34778 * 120.00146 * 295.93907 * 17 2 1 19 19 O 1.21284 * 119.99755 * 4.87294 * 18 17 2 20 20 C 1.50696 * 120.00163 * 184.87453 * 18 17 2 21 21 H 1.09002 * 115.54963 * 34.32728 * 20 18 17 22 22 C 1.53004 * 117.49872 * 179.97438 * 20 18 17 23 23 C 1.53004 * 117.49490 * 248.62345 * 20 18 17 24 24 F 1.39899 * 117.50028 * 359.97438 * 23 20 18 25 25 F 1.39898 * 117.49751 * 145.02080 * 23 20 18 26 26 C 1.52998 * 109.47353 * 239.99812 * 2 1 3 27 27 C 1.53000 * 117.50114 * 13.86649 * 26 2 1 28 28 C 1.52999 * 117.49883 * 305.20215 * 26 2 1 29 29 H 1.09005 * 109.46730 * 60.00443 * 1 2 3 30 30 H 1.09005 * 109.46713 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47733 * 299.99923 * 1 2 3 32 32 H 1.09000 * 109.47686 * 59.99856 * 3 2 1 33 33 H 1.08997 * 109.47348 * 299.99532 * 3 2 1 34 34 H 1.00900 * 110.99293 * 56.04530 * 4 3 2 35 35 H 1.08998 * 109.46894 * 60.00483 * 5 4 3 36 36 H 1.08993 * 109.47167 * 300.00197 * 5 4 3 37 37 H 0.96999 * 120.00258 * 359.97438 * 8 6 5 38 38 H 0.97001 * 120.00498 * 179.97438 * 12 11 9 39 39 H 0.96996 * 119.99893 * 115.93768 * 17 2 1 40 40 H 1.08995 * 117.49683 * 214.97558 * 22 20 18 41 41 H 1.08996 * 117.49985 * 0.02562 * 22 20 18 42 42 H 1.08999 * 115.54519 * 159.53466 * 26 2 1 43 43 H 1.09001 * 117.49287 * 359.97438 * 27 26 2 44 44 H 1.08997 * 117.50062 * 145.01932 * 27 26 2 45 45 H 1.09001 * 117.49511 * 214.97390 * 28 26 2 46 46 H 1.08994 * 117.49819 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 2.8141 0.0000 6 6 5.5418 2.7739 0.0000 7 8 6.1200 1.7077 0.0010 8 7 6.2465 3.9228 0.0001 9 6 7.6170 3.8862 0.0006 10 1 8.1319 2.9369 0.0015 11 6 8.3435 5.0706 0.0001 12 7 7.7171 6.2258 -0.0004 13 14 10.2109 5.0209 0.0016 14 1 10.7068 5.0065 -1.3981 15 1 10.7374 6.2203 0.7009 16 1 10.6729 3.7962 0.7030 17 7 2.0183 -0.6906 1.1962 18 6 1.7616 -0.1843 2.4187 19 8 1.0525 0.7929 2.5336 20 6 2.3556 -0.8324 3.6426 21 1 3.3495 -1.2606 3.5124 22 6 2.0271 -0.2102 5.0013 23 6 1.3981 -1.5463 4.5990 24 9 0.0382 -1.5469 4.2705 25 9 1.8651 -2.6990 5.2396 26 6 2.0401 -0.7213 -1.2492 27 6 1.0334 -0.9923 -2.3690 28 6 1.5380 -2.1451 -1.4973 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.8708 0.9164 -0.7805 35 1 3.6855 3.3379 0.8896 36 1 3.6861 3.3369 -0.8903 37 1 5.7840 4.7754 -0.0003 38 1 8.2242 7.0527 -0.0004 39 1 2.5264 -1.5122 1.1085 40 1 2.8046 -0.2298 5.7649 41 1 1.3811 0.6676 5.0099 42 1 3.0654 -0.4915 -1.5389 43 1 0.0076 -0.6571 -2.2156 44 1 1.3965 -0.9413 -3.3955 45 1 2.2329 -2.8518 -1.9508 46 1 0.8447 -2.5681 -0.7704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698640784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:07 Heat of formation + Delta-G solvation = -104.116241 kcal Electronic energy + Delta-G solvation = -31011.018724 eV Core-core repulsion = 26380.739073 eV Total energy + Delta-G solvation = -4630.279650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.95701 -47.63023 -40.63463 -38.61948 -38.11579 -35.85588 -35.17828 -34.09196 -33.64331 -31.23785 -30.75456 -27.65377 -25.62032 -24.80521 -23.60710 -23.00506 -22.80467 -22.55212 -20.33357 -19.36312 -19.13869 -18.51830 -17.88916 -17.56733 -16.67860 -16.46892 -16.19431 -16.08466 -15.55696 -15.05203 -14.80167 -14.53725 -14.32669 -14.28410 -14.21199 -13.94519 -13.89156 -13.77343 -13.43361 -13.21869 -12.99863 -12.69976 -12.49202 -12.33834 -11.99543 -11.69093 -11.59760 -11.47740 -11.43248 -11.36628 -11.17506 -11.03394 -10.59661 -10.45076 -10.40029 -10.31718 -10.22048 -9.72910 -9.50841 -9.07616 -8.43107 -8.01673 -7.94727 -6.41498 -3.82481 2.02881 2.68610 2.84655 3.17252 3.22711 3.25893 3.31698 3.61563 3.91845 3.95140 4.09809 4.17283 4.28039 4.31066 4.37337 4.55924 4.70683 4.79099 4.86281 5.11029 5.17035 5.19110 5.26431 5.30752 5.34892 5.38682 5.53664 5.56701 5.61741 5.64028 5.69103 5.85853 5.88572 5.91261 6.02134 6.08403 6.17694 6.28387 6.47621 7.23581 7.45668 7.54879 7.70724 8.06483 8.13857 8.61583 9.17838 9.54938 10.06244 10.76252 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.002782 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.163954 B =10061.184309 C =11681.158472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.216 3.784 3 C 0.046 3.954 4 N -0.661 5.661 5 C 0.051 3.949 6 C 0.442 3.558 7 O -0.585 6.585 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 N -0.695 5.695 18 C 0.557 3.443 19 O -0.527 6.527 20 C -0.188 4.188 21 H 0.151 0.849 22 C -0.138 4.138 23 C 0.215 3.785 24 F -0.153 7.153 25 F -0.157 7.157 26 C -0.165 4.165 27 C -0.171 4.171 28 C -0.174 4.174 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.343 0.657 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.402 0.598 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.337 -14.377 2.499 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.130 3.870 3 C -0.084 4.084 4 N -0.295 5.295 5 C -0.081 4.081 6 C 0.228 3.772 7 O -0.469 6.469 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.194 1.194 17 N -0.344 5.344 18 C 0.342 3.658 19 O -0.404 6.404 20 C -0.210 4.210 21 H 0.169 0.831 22 C -0.176 4.176 23 C 0.178 3.822 24 F -0.134 7.134 25 F -0.137 7.137 26 C -0.184 4.184 27 C -0.209 4.209 28 C -0.211 4.211 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.164 0.836 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.134 0.866 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.332 -14.281 3.256 21.938 hybrid contribution 0.843 0.297 -1.014 1.352 sum -15.489 -13.984 2.242 20.987 Atomic orbital electron populations 1.22329 0.94126 1.02376 1.03673 1.19750 0.93264 0.91486 0.82471 1.22412 0.88788 0.95026 1.02204 1.60082 1.05209 1.13253 1.50930 1.21656 0.94949 0.90374 1.01164 1.19813 0.88077 0.84993 0.84330 1.90502 1.71220 1.29654 1.55548 1.41869 1.07013 1.06810 1.64346 1.19691 0.81094 0.94493 1.47616 0.87969 1.25261 1.00680 0.94652 0.97353 1.69613 1.36596 0.97489 1.50587 0.85864 0.82260 0.77846 0.78350 1.20450 1.20913 1.19414 1.45660 1.56462 1.27767 1.04531 1.18910 0.80034 0.83583 0.83262 1.90642 1.37382 1.26260 1.86137 1.23782 1.01631 1.02937 0.92679 0.83137 1.24293 1.02666 0.94878 0.95771 1.19761 0.77099 0.84592 1.00787 1.93065 1.30996 1.96664 1.92640 1.93053 1.87512 1.51248 1.81917 1.22552 1.00098 0.99015 0.96749 1.23134 0.99430 1.02617 0.95694 1.22966 1.03806 0.91022 1.03342 0.91395 0.92305 0.90150 0.88469 0.94725 0.83633 0.89685 0.94038 0.77462 0.91871 0.76356 0.85026 0.84616 0.86635 0.87930 0.88534 0.88506 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 7.12 37.16 0.26 -1.41 16 2 C 0.22 2.33 0.65 -131.82 -0.09 2.25 16 3 C 0.05 0.61 4.40 -3.82 -0.02 0.60 16 4 N -0.66 -10.59 5.94 -115.06 -0.68 -11.27 16 5 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 6 C 0.44 10.46 7.82 -10.98 -0.09 10.37 16 7 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 8 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 9 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 10 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 13 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 N -0.69 -7.52 4.90 -47.61 -0.23 -7.75 16 18 C 0.56 6.91 6.66 -10.99 -0.07 6.83 16 19 O -0.53 -7.87 12.49 5.55 0.07 -7.80 16 20 C -0.19 -1.90 6.17 -91.77 -0.57 -2.47 16 21 H 0.15 1.27 8.14 -51.93 -0.42 0.85 16 22 C -0.14 -1.25 10.02 -26.70 -0.27 -1.51 16 23 C 0.21 2.19 5.20 -26.70 -0.14 2.05 16 24 F -0.15 -1.85 17.13 2.25 0.04 -1.81 16 25 F -0.16 -1.63 17.60 2.25 0.04 -1.59 16 26 C -0.17 -1.56 4.94 -90.62 -0.45 -2.01 16 27 C -0.17 -1.35 9.66 -26.69 -0.26 -1.61 16 28 C -0.17 -1.34 9.77 -26.69 -0.26 -1.60 16 29 H 0.07 0.60 6.73 -51.93 -0.35 0.25 16 30 H 0.06 0.54 6.96 -51.93 -0.36 0.17 16 31 H 0.08 0.98 6.31 -51.93 -0.33 0.65 16 32 H 0.10 1.49 6.05 -51.93 -0.31 1.17 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.34 5.55 6.34 -39.29 -0.25 5.30 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.40 3.68 8.41 -40.82 -0.34 3.33 16 40 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.14 1.31 7.67 -51.93 -0.40 0.91 16 42 H 0.12 1.26 6.27 -51.93 -0.33 0.93 16 43 H 0.10 0.76 5.89 -51.93 -0.31 0.45 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.71 7.28 -51.93 -0.38 0.33 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -32.40 385.07 -7.59 -39.99 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -6.14 Total: 17.94 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.21 Total: 4.38 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.25 Total: -57.37 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.16 Total: -23.36 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.40 -7.59 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698640784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.126 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds