Wall clock time and date at job start Wed Apr 1 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46664 * 2 1 4 4 N 1.46908 * 109.47095 * 179.97438 * 3 2 1 5 5 C 1.46900 * 110.99994 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46661 * 180.02562 * 5 4 3 7 7 O 1.21290 * 120.00159 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99330 * 180.02562 * 6 5 4 9 9 C 1.37104 * 119.99464 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99824 * 359.97438 * 9 8 6 11 11 C 1.38945 * 119.99679 * 179.97438 * 9 8 6 12 12 N 1.31412 * 120.00468 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99923 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46934 * 90.00227 * 13 11 9 15 15 H 1.48493 * 109.47140 * 210.00171 * 13 11 9 16 16 H 1.48501 * 109.46958 * 330.00527 * 13 11 9 17 17 N 1.46504 * 109.46989 * 119.99747 * 2 1 3 18 18 C 1.34778 * 120.00146 * 295.93907 * 17 2 1 19 19 O 1.21284 * 119.99755 * 4.87294 * 18 17 2 20 20 C 1.50696 * 120.00163 * 184.87453 * 18 17 2 21 21 H 1.09002 * 115.54963 * 34.32728 * 20 18 17 22 22 C 1.53004 * 117.49872 * 179.97438 * 20 18 17 23 23 C 1.53004 * 117.49490 * 248.62345 * 20 18 17 24 24 F 1.39899 * 117.50028 * 359.97438 * 23 20 18 25 25 F 1.39898 * 117.49751 * 145.02080 * 23 20 18 26 26 C 1.52998 * 109.47353 * 239.99812 * 2 1 3 27 27 C 1.53000 * 117.50114 * 13.86649 * 26 2 1 28 28 C 1.52999 * 117.49883 * 305.20215 * 26 2 1 29 29 H 1.09005 * 109.46730 * 60.00443 * 1 2 3 30 30 H 1.09005 * 109.46713 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47733 * 299.99923 * 1 2 3 32 32 H 1.09000 * 109.47686 * 59.99856 * 3 2 1 33 33 H 1.08997 * 109.47348 * 299.99532 * 3 2 1 34 34 H 1.00900 * 110.99293 * 56.04530 * 4 3 2 35 35 H 1.08998 * 109.46894 * 60.00483 * 5 4 3 36 36 H 1.08993 * 109.47167 * 300.00197 * 5 4 3 37 37 H 0.96999 * 120.00258 * 359.97438 * 8 6 5 38 38 H 0.97001 * 120.00498 * 179.97438 * 12 11 9 39 39 H 0.96996 * 119.99893 * 115.93768 * 17 2 1 40 40 H 1.08995 * 117.49683 * 214.97558 * 22 20 18 41 41 H 1.08996 * 117.49985 * 0.02562 * 22 20 18 42 42 H 1.08999 * 115.54519 * 159.53466 * 26 2 1 43 43 H 1.09001 * 117.49287 * 359.97438 * 27 26 2 44 44 H 1.08997 * 117.50062 * 145.01932 * 27 26 2 45 45 H 1.09001 * 117.49511 * 214.97390 * 28 26 2 46 46 H 1.08994 * 117.49819 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 2.8141 0.0000 6 6 5.5418 2.7739 0.0000 7 8 6.1200 1.7077 0.0010 8 7 6.2465 3.9228 0.0001 9 6 7.6170 3.8862 0.0006 10 1 8.1319 2.9369 0.0015 11 6 8.3435 5.0706 0.0001 12 7 7.7171 6.2258 -0.0004 13 14 10.2109 5.0209 0.0016 14 1 10.7068 5.0065 -1.3981 15 1 10.7374 6.2203 0.7009 16 1 10.6729 3.7962 0.7030 17 7 2.0183 -0.6906 1.1962 18 6 1.7616 -0.1843 2.4187 19 8 1.0525 0.7929 2.5336 20 6 2.3556 -0.8324 3.6426 21 1 3.3495 -1.2606 3.5124 22 6 2.0271 -0.2102 5.0013 23 6 1.3981 -1.5463 4.5990 24 9 0.0382 -1.5469 4.2705 25 9 1.8651 -2.6990 5.2396 26 6 2.0401 -0.7213 -1.2492 27 6 1.0334 -0.9923 -2.3690 28 6 1.5380 -2.1451 -1.4973 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.8708 0.9164 -0.7805 35 1 3.6855 3.3379 0.8896 36 1 3.6861 3.3369 -0.8903 37 1 5.7840 4.7754 -0.0003 38 1 8.2242 7.0527 -0.0004 39 1 2.5264 -1.5122 1.1085 40 1 2.8046 -0.2298 5.7649 41 1 1.3811 0.6676 5.0099 42 1 3.0654 -0.4915 -1.5389 43 1 0.0076 -0.6571 -2.2156 44 1 1.3965 -0.9413 -3.3955 45 1 2.2329 -2.8518 -1.9508 46 1 0.8447 -2.5681 -0.7704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698640784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:06 Heat of formation + Delta-G solvation = -127.069739 kcal Electronic energy + Delta-G solvation = -31012.014062 eV Core-core repulsion = 26380.739073 eV Total energy + Delta-G solvation = -4631.274989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.79767 -48.47962 -41.55016 -40.12915 -39.33653 -36.72833 -36.40329 -35.79033 -34.88467 -33.26393 -31.73052 -29.04628 -26.91717 -26.12479 -24.70275 -24.15292 -23.59042 -23.17910 -21.22370 -21.07223 -20.15067 -19.90514 -19.36138 -18.38643 -18.00522 -17.46038 -17.14885 -17.02033 -16.95071 -16.42877 -16.10745 -15.96635 -15.71229 -15.31137 -15.19777 -15.12383 -14.86287 -14.72120 -14.60381 -14.45266 -14.27170 -13.77197 -13.48826 -13.45957 -13.26485 -13.13293 -13.03195 -12.79024 -12.53089 -12.41315 -12.27541 -12.12027 -12.10570 -12.01377 -11.50534 -11.30776 -11.23225 -11.06776 -10.66625 -10.37245 -10.01980 -9.97417 -9.32196 -8.46621 -5.95732 1.14791 1.38041 1.41890 1.54841 1.88292 2.04011 2.04664 2.28733 2.36801 2.88367 2.95060 3.17514 3.20452 3.37872 3.49060 3.53112 3.57270 3.73882 3.95426 4.05413 4.12015 4.25231 4.29716 4.44732 4.46339 4.54142 4.56384 4.60374 4.61796 4.72741 4.80026 4.82315 4.88178 4.96816 5.02084 5.20145 5.29778 5.38082 5.40616 5.57610 5.85536 6.07029 6.42897 6.58405 6.59150 7.11810 7.23341 7.55337 8.09759 8.70875 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.002782 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.163954 B =10061.184309 C =11681.158472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.219 3.781 3 C 0.050 3.950 4 N -0.666 5.666 5 C 0.065 3.935 6 C 0.442 3.558 7 O -0.618 6.618 8 N -0.573 5.573 9 C -0.333 4.333 10 H 0.081 0.919 11 C -0.014 4.014 12 N -0.922 5.922 13 Si 0.994 3.006 14 H -0.270 1.270 15 H -0.272 1.272 16 H -0.271 1.271 17 N -0.690 5.690 18 C 0.548 3.452 19 O -0.557 6.557 20 C -0.192 4.192 21 H 0.168 0.832 22 C -0.129 4.129 23 C 0.213 3.787 24 F -0.167 7.167 25 F -0.157 7.157 26 C -0.178 4.178 27 C -0.164 4.164 28 C -0.162 4.162 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.343 0.657 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.410 0.590 40 H 0.158 0.842 41 H 0.128 0.872 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 -14.978 2.100 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 C -0.079 4.079 4 N -0.300 5.300 5 C -0.068 4.068 6 C 0.229 3.771 7 O -0.504 6.504 8 N -0.210 5.210 9 C -0.462 4.462 10 H 0.099 0.901 11 C -0.213 4.213 12 N -0.563 5.563 13 Si 0.817 3.183 14 H -0.196 1.196 15 H -0.197 1.197 16 H -0.196 1.196 17 N -0.339 5.339 18 C 0.334 3.666 19 O -0.437 6.437 20 C -0.214 4.214 21 H 0.185 0.815 22 C -0.167 4.167 23 C 0.175 3.825 24 F -0.147 7.147 25 F -0.138 7.138 26 C -0.197 4.197 27 C -0.201 4.201 28 C -0.199 4.199 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.164 0.836 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.246 0.754 40 H 0.176 0.824 41 H 0.146 0.854 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.419 -14.892 2.846 22.348 hybrid contribution 0.813 0.457 -0.904 1.299 sum -15.606 -14.435 1.941 21.346 Atomic orbital electron populations 1.22257 0.93284 1.02975 1.03236 1.19716 0.93746 0.90139 0.83106 1.22392 0.86882 0.96949 1.01716 1.60053 1.06889 1.11893 1.51152 1.21492 0.90756 0.92107 1.02423 1.20725 0.90258 0.83892 0.82235 1.90471 1.72662 1.30741 1.56570 1.41941 1.06557 1.07504 1.65047 1.19679 0.82469 0.94194 1.49906 0.90127 1.26062 1.05045 0.93967 0.96258 1.69680 1.38269 0.97961 1.50347 0.84917 0.76723 0.77972 0.78665 1.19583 1.19655 1.19619 1.45704 1.56034 1.27860 1.04307 1.19326 0.79739 0.83381 0.84203 1.90629 1.38734 1.27632 1.86670 1.23853 1.02128 1.03230 0.92213 0.81478 1.24424 1.02765 0.93765 0.95702 1.19811 0.76427 0.85040 1.01189 1.93034 1.32127 1.96748 1.92818 1.93051 1.87425 1.51394 1.81897 1.22373 0.99774 1.00694 0.96855 1.23226 0.99282 1.02086 0.95525 1.23021 1.03528 0.90277 1.03058 0.90006 0.91144 0.92372 0.90345 0.93628 0.83644 0.89010 0.91947 0.77141 0.91313 0.75395 0.82437 0.85377 0.88122 0.87125 0.87925 0.87761 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 7.12 71.98 0.51 -2.48 16 2 C 0.22 4.51 0.65 3.60 0.00 4.51 16 3 C 0.05 1.31 4.40 86.30 0.38 1.69 16 4 N -0.67 -21.02 5.94 -517.92 -3.08 -24.10 16 5 C 0.06 2.32 6.17 85.56 0.53 2.85 16 6 C 0.44 21.06 7.82 87.66 0.69 21.75 16 7 O -0.62 -33.59 15.78 -3.06 -0.05 -33.63 16 8 N -0.57 -29.64 5.29 -306.98 -1.62 -31.27 16 9 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 10 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 11 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 12 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 13 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 N -0.69 -14.44 4.90 -422.92 -2.07 -16.52 16 18 C 0.55 13.42 6.66 87.66 0.58 14.00 16 19 O -0.56 -16.79 12.49 -3.04 -0.04 -16.83 16 20 C -0.19 -3.72 6.17 -11.54 -0.07 -3.80 16 21 H 0.17 2.60 8.14 -2.39 -0.02 2.59 16 22 C -0.13 -2.20 10.02 30.62 0.31 -1.89 16 23 C 0.21 4.16 5.20 30.62 0.16 4.32 16 24 F -0.17 -3.99 17.13 44.97 0.77 -3.22 16 25 F -0.16 -3.09 17.60 44.97 0.79 -2.30 16 26 C -0.18 -3.11 4.94 -10.79 -0.05 -3.16 16 27 C -0.16 -2.22 9.66 30.62 0.30 -1.92 16 28 C -0.16 -2.13 9.77 30.62 0.30 -1.84 16 29 H 0.08 1.29 6.73 -2.38 -0.02 1.27 16 30 H 0.07 1.15 6.96 -2.38 -0.02 1.14 16 31 H 0.06 1.39 6.31 -2.39 -0.02 1.38 16 32 H 0.08 2.39 6.05 -2.39 -0.01 2.38 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.34 10.97 6.34 -89.69 -0.57 10.40 16 35 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.39 19.62 7.90 -92.71 -0.73 18.89 16 38 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 39 H 0.41 7.10 8.41 -92.71 -0.78 6.32 16 40 H 0.16 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.13 2.43 7.67 -2.39 -0.02 2.41 16 42 H 0.10 2.11 6.27 -2.39 -0.01 2.09 16 43 H 0.11 1.33 5.89 -2.39 -0.01 1.31 16 44 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.10 1.24 7.28 -2.39 -0.02 1.23 16 Total: -1.00 -69.91 385.07 0.91 -69.00 By element: Atomic # 1 Polarization: 49.15 SS G_CDS: -1.01 Total: 48.14 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 4.91 Total: 15.68 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -6.49 Total: -121.61 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.09 Total: -50.47 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 1.56 Total: -5.52 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -69.91 0.91 -69.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698640784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.065 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds