Wall clock time and date at job start Wed Apr 1 2020 04:30:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 F 1.39893 * 109.47192 * 2 1
4 4 F 1.39903 * 109.46989 * 239.99873 * 2 1 3
5 5 C 1.50703 * 109.47026 * 119.99739 * 2 1 3
6 6 O 1.21280 * 120.00034 * 335.00375 * 5 2 1
7 7 N 1.34776 * 119.99804 * 154.99483 * 5 2 1
8 8 C 1.47174 * 135.99372 * 359.64048 * 7 5 2
9 9 C 1.53199 * 87.73858 * 153.41441 * 8 7 5
10 10 C 1.47172 * 135.99386 * 179.97438 * 7 5 2
11 11 C 1.52609 * 114.02558 * 139.56889 * 9 8 7
12 12 C 1.53327 * 108.89375 * 186.63169 * 11 9 8
13 13 C 1.53029 * 109.16351 * 304.77337 * 12 11 9
14 14 N 1.46808 * 109.80378 * 61.06199 * 13 12 11
15 15 C 1.46897 * 111.00165 * 172.34789 * 14 13 12
16 16 C 1.50695 * 109.47344 * 190.51431 * 15 14 13
17 17 O 1.21296 * 120.00019 * 6.27695 * 16 15 14
18 18 N 1.34783 * 120.00319 * 186.27999 * 16 15 14
19 19 C 1.37089 * 120.00124 * 180.02562 * 18 16 15
20 20 H 1.07999 * 120.00267 * 359.97438 * 19 18 16
21 21 C 1.38955 * 120.00041 * 179.97438 * 19 18 16
22 22 N 1.31419 * 119.99895 * 359.97438 * 21 19 18
23 23 Si 1.86804 * 120.00358 * 180.02562 * 21 19 18
24 24 H 1.48494 * 109.47045 * 59.99348 * 23 21 19
25 25 H 1.48499 * 109.47248 * 179.97438 * 23 21 19
26 26 H 1.48503 * 109.46481 * 299.99513 * 23 21 19
27 27 C 1.47046 * 111.14794 * 296.41156 * 14 13 12
28 28 H 1.09006 * 109.46689 * 300.00400 * 1 2 3
29 29 H 1.08995 * 109.47244 * 59.99576 * 1 2 3
30 30 H 1.08997 * 109.47684 * 180.02562 * 1 2 3
31 31 H 1.09000 * 113.48804 * 268.09886 * 8 7 5
32 32 H 1.08994 * 113.49800 * 38.61237 * 8 7 5
33 33 H 1.08999 * 113.49376 * 321.37672 * 10 7 5
34 34 H 1.08999 * 113.48947 * 91.83351 * 10 7 5
35 35 H 1.08996 * 109.56675 * 306.45614 * 11 9 8
36 36 H 1.09004 * 109.56449 * 66.80934 * 11 9 8
37 37 H 1.09002 * 109.52113 * 184.86480 * 12 11 9
38 38 H 1.08999 * 109.56744 * 64.70811 * 12 11 9
39 39 H 1.09000 * 109.41441 * 300.95654 * 13 12 11
40 40 H 1.09004 * 109.35736 * 181.12962 * 13 12 11
41 41 H 1.08994 * 109.47189 * 310.52135 * 15 14 13
42 42 H 1.09010 * 109.46962 * 70.51582 * 15 14 13
43 43 H 0.96997 * 119.99541 * 359.97438 * 18 16 15
44 44 H 0.96992 * 120.00062 * 179.97438 * 22 21 19
45 45 H 1.08994 * 109.49940 * 299.15601 * 27 14 13
46 46 H 1.09002 * 109.49977 * 179.04768 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 9 1.9963 1.3189 0.0000
4 9 1.9963 -0.6595 -1.1423
5 6 2.0323 -0.7104 1.2305
6 8 1.3370 -0.7705 2.2224
7 7 3.2542 -1.2790 1.2287
8 6 4.3531 -1.4237 0.2604
9 6 5.3099 -1.5225 1.4527
10 6 4.0725 -2.0327 2.1922
11 6 6.4092 -2.5672 1.2822
12 6 7.1905 -2.6848 2.5963
13 6 7.7094 -1.3023 2.9977
14 7 6.5798 -0.3879 3.2050
15 6 7.0343 0.8918 3.7650
16 6 5.8407 1.7007 4.2031
17 8 4.7311 1.2118 4.1688
18 7 6.0059 2.9674 4.6330
19 6 4.9201 3.7030 5.0320
20 1 3.9322 3.2677 5.0015
21 6 5.0906 5.0087 5.4757
22 7 6.2928 5.5383 5.5133
23 14 3.6111 6.0110 6.0201
24 1 2.9433 5.3296 7.1580
25 1 4.0577 7.3618 6.4456
26 1 2.6564 6.1380 4.8898
27 6 5.8294 -0.1804 1.9576
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0276 0.0005
31 1 4.2960 -2.3396 -0.3278
32 1 4.5111 -0.5368 -0.3533
33 1 3.9932 -1.6612 3.2139
34 1 3.9391 -3.1124 2.1245
35 1 5.9625 -3.5303 1.0356
36 1 7.0837 -2.2602 0.4828
37 1 8.0318 -3.3644 2.4603
38 1 6.5347 -3.0687 3.3778
39 1 8.3508 -0.9126 2.2072
40 1 8.2825 -1.3856 3.9212
41 1 7.6805 0.7042 4.6224
42 1 7.5887 1.4441 3.0062
43 1 6.8932 3.3582 4.6608
44 1 6.4117 6.4498 5.8227
45 1 6.4854 0.2613 1.2075
46 1 4.9888 0.4877 2.1455
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001700614655.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:40
Heat of formation + Delta-G solvation = -119.182491 kcal
Electronic energy + Delta-G solvation = -32267.193143 eV
Core-core repulsion = 27636.260171 eV
Total energy + Delta-G solvation = -4630.932972 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.165 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-49.23576 -47.23280 -41.09380 -38.93155 -38.10913 -36.61310 -33.93006 -32.91664
-31.67620 -31.16443 -30.63284 -27.69716 -27.10669 -26.20116 -24.72107 -23.99107
-22.98835 -21.49188 -20.02494 -19.13596 -18.46345 -17.96588 -17.81202 -17.78129
-16.90561 -16.07946 -15.92323 -15.71768 -15.31897 -14.88873 -14.60445 -14.52881
-14.28986 -14.05481 -13.87486 -13.65523 -13.58773 -13.53378 -13.37001 -13.12200
-12.79384 -12.74248 -12.61444 -12.48556 -12.34931 -12.05069 -11.95050 -11.79916
-11.46388 -11.30863 -11.05163 -10.96118 -10.67554 -10.49682 -10.39432 -10.25719
-10.15562 -9.80747 -9.40950 -8.80940 -8.40678 -7.92945 -7.84177 -6.36775
-3.76986 2.21067 2.39973 3.24683 3.29368 3.34907 3.50677 3.77677
3.79583 3.95898 4.17070 4.21597 4.36852 4.45201 4.63131 4.73810
4.94366 5.02323 5.10823 5.18172 5.24033 5.26574 5.29380 5.33078
5.38242 5.51108 5.57141 5.62000 5.64602 5.71519 5.72920 5.80344
5.82518 5.83542 5.98544 6.05340 6.11950 6.23221 6.33303 6.47133
7.25056 7.38348 7.50635 7.60540 7.78392 8.11794 8.67335 9.23897
9.59806 10.12122 10.81004
Molecular weight = 345.17amu
Principal moments of inertia in cm(-1)
A = 0.008683 B = 0.004319 C = 0.003101
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3223.737928 B = 6481.028609 C = 9027.810957
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.285 3.715
3 F -0.177 7.177
4 F -0.193 7.193
5 C 0.514 3.486
6 O -0.498 6.498
7 N -0.627 5.627
8 C 0.107 3.893
9 C -0.087 4.087
10 C 0.122 3.878
11 C -0.101 4.101
12 C -0.113 4.113
13 C 0.053 3.947
14 N -0.512 5.512
15 C 0.047 3.953
16 C 0.441 3.559
17 O -0.571 6.571
18 N -0.565 5.565
19 C -0.296 4.296
20 H 0.102 0.898
21 C 0.023 3.977
22 N -0.904 5.904
23 Si 0.929 3.071
24 H -0.274 1.274
25 H -0.285 1.285
26 H -0.274 1.274
27 C 0.081 3.919
28 H 0.103 0.897
29 H 0.089 0.911
30 H 0.091 0.909
31 H 0.094 0.906
32 H 0.081 0.919
33 H 0.101 0.899
34 H 0.083 0.917
35 H 0.069 0.931
36 H 0.067 0.933
37 H 0.067 0.933
38 H 0.074 0.926
39 H 0.030 0.970
40 H 0.074 0.926
41 H 0.090 0.910
42 H 0.046 0.954
43 H 0.391 0.609
44 H 0.271 0.729
45 H 0.031 0.969
46 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.698 -16.112 -13.391 20.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C 0.246 3.754
3 F -0.158 7.158
4 F -0.174 7.174
5 C 0.298 3.702
6 O -0.372 6.372
7 N -0.361 5.361
8 C -0.016 4.016
9 C -0.088 4.088
10 C 0.001 3.999
11 C -0.139 4.139
12 C -0.151 4.151
13 C -0.075 4.075
14 N -0.236 5.236
15 C -0.084 4.084
16 C 0.226 3.774
17 O -0.454 6.454
18 N -0.202 5.202
19 C -0.426 4.426
20 H 0.120 0.880
21 C -0.179 4.179
22 N -0.545 5.545
23 Si 0.756 3.244
24 H -0.199 1.199
25 H -0.210 1.210
26 H -0.199 1.199
27 C -0.047 4.047
28 H 0.121 0.879
29 H 0.108 0.892
30 H 0.110 0.890
31 H 0.112 0.888
32 H 0.099 0.901
33 H 0.119 0.881
34 H 0.101 0.899
35 H 0.087 0.913
36 H 0.086 0.914
37 H 0.086 0.914
38 H 0.092 0.908
39 H 0.048 0.952
40 H 0.092 0.908
41 H 0.108 0.892
42 H 0.064 0.936
43 H 0.224 0.776
44 H 0.081 0.919
45 H 0.049 0.951
46 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -0.894 -16.364 -12.478 20.598
hybrid contribution 0.612 1.376 -0.481 1.581
sum -0.282 -14.988 -12.959 19.815
Atomic orbital electron populations
1.22630 0.88914 1.06052 1.06278 1.21345 0.95561 0.76451 0.82058
1.93125 1.90467 1.35761 1.96488 1.93029 1.90588 1.80793 1.52982
1.20151 0.80416 0.80538 0.89064 1.90801 1.54671 1.58646 1.33033
1.49457 1.14126 1.53535 1.18996 1.23251 0.82497 1.02571 0.93297
1.21840 0.93917 0.97303 0.95712 1.23051 0.84614 0.95496 0.96764
1.21429 0.96638 0.97578 0.98266 1.21572 0.99823 0.96399 0.97308
1.22108 0.92120 0.93072 1.00229 1.61464 1.23067 1.11795 1.27286
1.21854 0.96944 0.89933 0.99653 1.19773 0.89975 0.82997 0.84690
1.90544 1.25670 1.70673 1.58558 1.41860 1.10351 1.10803 1.57220
1.19640 0.89293 0.94249 1.39385 0.88040 1.25230 0.97801 0.97206
0.97637 1.69604 1.21235 1.15978 1.47722 0.85948 0.80901 0.78321
0.79263 1.19899 1.21001 1.19913 1.21830 0.99107 0.94523 0.89240
0.87857 0.89186 0.89012 0.88848 0.90087 0.88084 0.89887 0.91269
0.91383 0.91424 0.90778 0.95211 0.90756 0.89167 0.93638 0.77595
0.91915 0.95141 0.87877
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.97 8.92 37.16 0.33 -1.64 16
2 C 0.29 4.00 2.42 -27.88 -0.07 3.93 16
3 F -0.18 -2.90 17.05 2.25 0.04 -2.86 16
4 F -0.19 -2.40 15.73 2.25 0.04 -2.37 16
5 C 0.51 8.61 7.48 -10.98 -0.08 8.53 16
6 O -0.50 -9.96 16.87 5.56 0.09 -9.87 16
7 N -0.63 -9.28 3.44 -184.91 -0.64 -9.92 16
8 C 0.11 1.20 6.50 -8.02 -0.05 1.14 16
9 C -0.09 -1.03 0.95 -154.90 -0.15 -1.18 16
10 C 0.12 1.67 7.70 -8.17 -0.06 1.61 16
11 C -0.10 -0.88 5.23 -26.76 -0.14 -1.02 16
12 C -0.11 -1.05 6.08 -26.55 -0.16 -1.21 16
13 C 0.05 0.61 5.40 -3.86 -0.02 0.59 16
14 N -0.51 -8.08 4.36 -236.32 -1.03 -9.11 16
15 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16
16 C 0.44 10.47 7.34 -10.99 -0.08 10.39 16
17 O -0.57 -15.60 14.26 5.54 0.08 -15.52 16
18 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16
19 C -0.30 -8.44 9.68 -14.94 -0.14 -8.59 16
20 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16
21 C 0.02 0.62 5.50 -17.46 -0.10 0.52 16
22 N -0.90 -24.98 13.05 55.50 0.72 -24.25 16
23 Si 0.93 21.73 29.55 -169.99 -5.02 16.71 16
24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16
27 C 0.08 1.26 4.30 -3.99 -0.02 1.24 16
28 H 0.10 1.21 7.87 -51.93 -0.41 0.80 16
29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
30 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16
31 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16
32 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16
33 H 0.10 1.78 8.11 -51.93 -0.42 1.36 16
34 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16
35 H 0.07 0.48 8.02 -51.93 -0.42 0.06 16
36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16
40 H 0.07 0.82 7.97 -51.93 -0.41 0.40 16
41 H 0.09 1.43 7.95 -51.93 -0.41 1.02 16
42 H 0.05 0.74 8.12 -51.92 -0.42 0.32 16
43 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16
44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16
45 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16
46 H 0.10 2.12 5.90 -51.93 -0.31 1.81 16
LS Contribution 382.37 15.07 5.76 5.76
Total: -1.00 -34.20 382.37 -7.63 -41.84
By element:
Atomic # 1 Polarization: 15.89 SS G_CDS: -6.85 Total: 9.04 kcal
Atomic # 6 Polarization: 15.91 SS G_CDS: -0.77 Total: 15.14 kcal
Atomic # 7 Polarization: -56.87 SS G_CDS: -1.00 Total: -57.87 kcal
Atomic # 8 Polarization: -25.56 SS G_CDS: 0.17 Total: -25.39 kcal
Atomic # 9 Polarization: -5.30 SS G_CDS: 0.07 Total: -5.23 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -34.20 -7.63 -41.84 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700614655.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.345 kcal
(2) G-P(sol) polarization free energy of solvation -34.205 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.550 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds