Wall clock time and date at job start Wed Apr 1 2020 04:30:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 F 1.39893 * 109.47192 * 2 1
4 4 F 1.39903 * 109.46989 * 239.99873 * 2 1 3
5 5 C 1.50703 * 109.47026 * 119.99739 * 2 1 3
6 6 O 1.21280 * 120.00034 * 335.00375 * 5 2 1
7 7 N 1.34776 * 119.99804 * 154.99483 * 5 2 1
8 8 C 1.47174 * 135.99372 * 359.64048 * 7 5 2
9 9 C 1.53199 * 87.73858 * 153.41441 * 8 7 5
10 10 C 1.47172 * 135.99386 * 179.97438 * 7 5 2
11 11 C 1.52609 * 114.02558 * 139.56889 * 9 8 7
12 12 C 1.53327 * 108.89375 * 186.63169 * 11 9 8
13 13 C 1.53029 * 109.16351 * 304.77337 * 12 11 9
14 14 N 1.46808 * 109.80378 * 61.06199 * 13 12 11
15 15 C 1.46897 * 111.00165 * 172.34789 * 14 13 12
16 16 C 1.50695 * 109.47344 * 190.51431 * 15 14 13
17 17 O 1.21296 * 120.00019 * 6.27695 * 16 15 14
18 18 N 1.34783 * 120.00319 * 186.27999 * 16 15 14
19 19 C 1.37089 * 120.00124 * 180.02562 * 18 16 15
20 20 H 1.07999 * 120.00267 * 359.97438 * 19 18 16
21 21 C 1.38955 * 120.00041 * 179.97438 * 19 18 16
22 22 N 1.31419 * 119.99895 * 359.97438 * 21 19 18
23 23 Si 1.86804 * 120.00358 * 180.02562 * 21 19 18
24 24 H 1.48494 * 109.47045 * 59.99348 * 23 21 19
25 25 H 1.48499 * 109.47248 * 179.97438 * 23 21 19
26 26 H 1.48503 * 109.46481 * 299.99513 * 23 21 19
27 27 C 1.47046 * 111.14794 * 296.41156 * 14 13 12
28 28 H 1.09006 * 109.46689 * 300.00400 * 1 2 3
29 29 H 1.08995 * 109.47244 * 59.99576 * 1 2 3
30 30 H 1.08997 * 109.47684 * 180.02562 * 1 2 3
31 31 H 1.09000 * 113.48804 * 268.09886 * 8 7 5
32 32 H 1.08994 * 113.49800 * 38.61237 * 8 7 5
33 33 H 1.08999 * 113.49376 * 321.37672 * 10 7 5
34 34 H 1.08999 * 113.48947 * 91.83351 * 10 7 5
35 35 H 1.08996 * 109.56675 * 306.45614 * 11 9 8
36 36 H 1.09004 * 109.56449 * 66.80934 * 11 9 8
37 37 H 1.09002 * 109.52113 * 184.86480 * 12 11 9
38 38 H 1.08999 * 109.56744 * 64.70811 * 12 11 9
39 39 H 1.09000 * 109.41441 * 300.95654 * 13 12 11
40 40 H 1.09004 * 109.35736 * 181.12962 * 13 12 11
41 41 H 1.08994 * 109.47189 * 310.52135 * 15 14 13
42 42 H 1.09010 * 109.46962 * 70.51582 * 15 14 13
43 43 H 0.96997 * 119.99541 * 359.97438 * 18 16 15
44 44 H 0.96992 * 120.00062 * 179.97438 * 22 21 19
45 45 H 1.08994 * 109.49940 * 299.15601 * 27 14 13
46 46 H 1.09002 * 109.49977 * 179.04768 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 9 1.9963 1.3189 0.0000
4 9 1.9963 -0.6595 -1.1423
5 6 2.0323 -0.7104 1.2305
6 8 1.3370 -0.7705 2.2224
7 7 3.2542 -1.2790 1.2287
8 6 4.3531 -1.4237 0.2604
9 6 5.3099 -1.5225 1.4527
10 6 4.0725 -2.0327 2.1922
11 6 6.4092 -2.5672 1.2822
12 6 7.1905 -2.6848 2.5963
13 6 7.7094 -1.3023 2.9977
14 7 6.5798 -0.3879 3.2050
15 6 7.0343 0.8918 3.7650
16 6 5.8407 1.7007 4.2031
17 8 4.7311 1.2118 4.1688
18 7 6.0059 2.9674 4.6330
19 6 4.9201 3.7030 5.0320
20 1 3.9322 3.2677 5.0015
21 6 5.0906 5.0087 5.4757
22 7 6.2928 5.5383 5.5133
23 14 3.6111 6.0110 6.0201
24 1 2.9433 5.3296 7.1580
25 1 4.0577 7.3618 6.4456
26 1 2.6564 6.1380 4.8898
27 6 5.8294 -0.1804 1.9576
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0276 0.0005
31 1 4.2960 -2.3396 -0.3278
32 1 4.5111 -0.5368 -0.3533
33 1 3.9932 -1.6612 3.2139
34 1 3.9391 -3.1124 2.1245
35 1 5.9625 -3.5303 1.0356
36 1 7.0837 -2.2602 0.4828
37 1 8.0318 -3.3644 2.4603
38 1 6.5347 -3.0687 3.3778
39 1 8.3508 -0.9126 2.2072
40 1 8.2825 -1.3856 3.9212
41 1 7.6805 0.7042 4.6224
42 1 7.5887 1.4441 3.0062
43 1 6.8932 3.3582 4.6608
44 1 6.4117 6.4498 5.8227
45 1 6.4854 0.2613 1.2075
46 1 4.9888 0.4877 2.1455
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700614655.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:39
Heat of formation + Delta-G solvation = -144.828947 kcal
Electronic energy + Delta-G solvation = -32268.305257 eV
Core-core repulsion = 27636.260171 eV
Total energy + Delta-G solvation = -4632.045086 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.165 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-50.38235 -48.38525 -42.17935 -40.40398 -39.72444 -37.90120 -35.95602 -34.05929
-33.24994 -32.71768 -31.66874 -29.19456 -28.21019 -27.21110 -26.55470 -25.05684
-24.20516 -22.51615 -21.15471 -21.01507 -19.89877 -19.44497 -19.08031 -18.94031
-18.08089 -17.74606 -17.18117 -16.86633 -16.60393 -16.45301 -16.19899 -15.74084
-15.61666 -15.39302 -15.28872 -15.07575 -14.98614 -14.70788 -14.53195 -14.16896
-13.96127 -13.77304 -13.62797 -13.62542 -13.48661 -13.41053 -13.19167 -13.17410
-12.97958 -12.92260 -12.53549 -12.47106 -12.15728 -11.94762 -11.67572 -11.53302
-11.43491 -11.19867 -10.94298 -10.26795 -10.01216 -9.96306 -9.15768 -8.48950
-5.97025 0.93563 1.29013 1.35269 1.36337 1.47511 2.05448 2.25720
2.39772 2.67414 2.72197 3.13254 3.17467 3.19909 3.37284 3.47104
3.72876 3.79448 4.05061 4.18194 4.24022 4.28704 4.33847 4.41111
4.41966 4.43224 4.47265 4.52535 4.59035 4.63835 4.72761 4.76396
4.83394 4.85393 4.90531 5.02825 5.13122 5.18934 5.37389 5.38379
5.53255 5.88855 6.07725 6.29873 6.36240 6.53640 6.59784 7.12064
7.55687 8.13506 8.68350
Molecular weight = 345.17amu
Principal moments of inertia in cm(-1)
A = 0.008683 B = 0.004319 C = 0.003101
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3223.737928 B = 6481.028609 C = 9027.810957
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.288 3.712
3 F -0.196 7.196
4 F -0.180 7.180
5 C 0.497 3.503
6 O -0.549 6.549
7 N -0.635 5.635
8 C 0.112 3.888
9 C -0.076 4.076
10 C 0.118 3.882
11 C -0.092 4.092
12 C -0.110 4.110
13 C 0.049 3.951
14 N -0.532 5.532
15 C 0.060 3.940
16 C 0.437 3.563
17 O -0.612 6.612
18 N -0.576 5.576
19 C -0.331 4.331
20 H 0.070 0.930
21 C -0.010 4.010
22 N -0.919 5.919
23 Si 0.987 3.013
24 H -0.274 1.274
25 H -0.264 1.264
26 H -0.276 1.276
27 C 0.083 3.917
28 H 0.088 0.912
29 H 0.117 0.883
30 H 0.108 0.892
31 H 0.138 0.862
32 H 0.078 0.922
33 H 0.048 0.952
34 H 0.120 0.880
35 H 0.100 0.900
36 H 0.089 0.911
37 H 0.101 0.899
38 H 0.060 0.940
39 H 0.046 0.954
40 H 0.080 0.920
41 H 0.112 0.888
42 H 0.064 0.936
43 H 0.396 0.604
44 H 0.278 0.722
45 H 0.041 0.959
46 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.400 -17.985 -15.389 23.792
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.248 3.752
3 F -0.177 7.177
4 F -0.161 7.161
5 C 0.282 3.718
6 O -0.427 6.427
7 N -0.368 5.368
8 C -0.010 4.010
9 C -0.077 4.077
10 C -0.003 4.003
11 C -0.130 4.130
12 C -0.148 4.148
13 C -0.078 4.078
14 N -0.256 5.256
15 C -0.071 4.071
16 C 0.224 3.776
17 O -0.498 6.498
18 N -0.214 5.214
19 C -0.461 4.461
20 H 0.088 0.912
21 C -0.210 4.210
22 N -0.560 5.560
23 Si 0.811 3.189
24 H -0.199 1.199
25 H -0.189 1.189
26 H -0.201 1.201
27 C -0.045 4.045
28 H 0.107 0.893
29 H 0.136 0.864
30 H 0.127 0.873
31 H 0.156 0.844
32 H 0.096 0.904
33 H 0.067 0.933
34 H 0.138 0.862
35 H 0.118 0.882
36 H 0.107 0.893
37 H 0.119 0.881
38 H 0.079 0.921
39 H 0.064 0.936
40 H 0.099 0.901
41 H 0.130 0.870
42 H 0.082 0.918
43 H 0.229 0.771
44 H 0.087 0.913
45 H 0.059 0.941
46 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 0.885 -18.254 -14.507 23.334
hybrid contribution 0.159 1.908 0.154 1.921
sum 1.044 -16.346 -14.353 21.778
Atomic orbital electron populations
1.22677 0.86396 1.07425 1.06877 1.21416 0.97144 0.75253 0.81337
1.93087 1.90897 1.37152 1.96550 1.93042 1.90663 1.80407 1.51963
1.20764 0.80851 0.80690 0.89500 1.90756 1.56329 1.60732 1.34871
1.49786 1.13927 1.52525 1.20569 1.23560 0.80183 1.04479 0.92737
1.21761 0.94538 0.96300 0.95116 1.23211 0.85779 0.97182 0.94175
1.21473 0.95472 0.97485 0.98524 1.21605 1.00811 0.95191 0.97202
1.22291 0.90872 0.93286 1.01302 1.61430 1.25302 1.11179 1.27735
1.21713 0.93899 0.90424 1.01072 1.20947 0.91410 0.82562 0.82646
1.90531 1.28186 1.71449 1.59594 1.41920 1.09825 1.11591 1.58071
1.19507 0.89090 0.95588 1.41896 0.91195 1.25946 1.00582 0.97435
0.96990 1.69653 1.22380 1.16489 1.47465 0.85087 0.77717 0.77541
0.78576 1.19924 1.18851 1.20117 1.21659 0.97365 0.95918 0.89592
0.89318 0.86422 0.87312 0.84416 0.90393 0.93287 0.86188 0.88194
0.89280 0.88103 0.92141 0.93616 0.90119 0.87009 0.91801 0.77060
0.91260 0.94076 0.93836
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.81 8.92 71.98 0.64 -3.17 16
2 C 0.29 8.21 2.42 29.85 0.07 8.28 16
3 F -0.20 -6.68 17.05 44.97 0.77 -5.91 16
4 F -0.18 -4.25 15.73 44.97 0.71 -3.54 16
5 C 0.50 17.47 7.48 87.66 0.66 18.12 16
6 O -0.55 -23.67 16.87 -3.03 -0.05 -23.73 16
7 N -0.64 -19.07 3.44 -857.31 -2.95 -22.03 16
8 C 0.11 2.26 6.50 83.43 0.54 2.80 16
9 C -0.08 -1.68 0.95 -52.43 -0.05 -1.73 16
10 C 0.12 3.23 7.70 83.34 0.64 3.87 16
11 C -0.09 -1.16 5.23 30.57 0.16 -1.00 16
12 C -0.11 -1.62 6.08 30.71 0.19 -1.43 16
13 C 0.05 1.00 5.40 86.33 0.47 1.47 16
14 N -0.53 -16.60 4.36 -901.58 -3.93 -20.53 16
15 C 0.06 2.12 5.45 85.56 0.47 2.59 16
16 C 0.44 21.83 7.34 87.65 0.64 22.47 16
17 O -0.61 -35.96 14.26 -3.08 -0.04 -36.00 16
18 N -0.58 -30.97 5.29 -306.98 -1.62 -32.60 16
19 C -0.33 -19.84 9.68 84.04 0.81 -19.03 16
20 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16
21 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16
22 N -0.92 -51.11 13.05 21.67 0.28 -50.83 16
23 Si 0.99 45.33 29.55 68.60 2.03 47.36 16
24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16
25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16
26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16
27 C 0.08 2.60 4.30 86.12 0.37 2.97 16
28 H 0.09 2.20 7.87 -2.38 -0.02 2.18 16
29 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16
30 H 0.11 1.95 8.14 -2.39 -0.02 1.94 16
31 H 0.14 1.64 8.10 -2.39 -0.02 1.62 16
32 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16
33 H 0.05 1.86 8.11 -2.39 -0.02 1.85 16
34 H 0.12 2.35 8.01 -2.39 -0.02 2.34 16
35 H 0.10 0.76 8.02 -2.39 -0.02 0.74 16
36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16
38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
40 H 0.08 1.54 7.97 -2.39 -0.02 1.52 16
41 H 0.11 3.46 7.95 -2.39 -0.02 3.44 16
42 H 0.06 2.02 8.12 -2.38 -0.02 2.01 16
43 H 0.40 20.06 7.90 -92.71 -0.73 19.32 16
44 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16
45 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16
46 H 0.04 1.90 5.90 -2.39 -0.01 1.89 16
Total: -1.00 -82.28 382.37 1.54 -80.74
By element:
Atomic # 1 Polarization: 30.67 SS G_CDS: 0.27 Total: 30.94 kcal
Atomic # 6 Polarization: 30.04 SS G_CDS: 6.08 Total: 36.12 kcal
Atomic # 7 Polarization: -117.76 SS G_CDS: -8.22 Total: -125.98 kcal
Atomic # 8 Polarization: -59.63 SS G_CDS: -0.09 Total: -59.73 kcal
Atomic # 9 Polarization: -10.93 SS G_CDS: 1.47 Total: -9.45 kcal
Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal
Total: -82.28 1.54 -80.74 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700614655.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.084 kcal
(2) G-P(sol) polarization free energy of solvation -82.283 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.367 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.745 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds