Wall clock time and date at job start Wed Apr 1 2020 04:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39901 * 109.47128 * 2 1 4 4 F 1.39903 * 109.47276 * 239.99664 * 2 1 3 5 5 C 1.50700 * 109.46811 * 120.00096 * 2 1 3 6 6 O 1.21280 * 120.00499 * 25.00058 * 5 2 1 7 7 N 1.34782 * 119.99824 * 204.99904 * 5 2 1 8 8 C 1.46491 * 120.00078 * 179.97438 * 7 5 2 9 9 H 1.09000 * 115.55831 * 350.58333 * 8 7 5 10 10 C 1.53049 * 117.53204 * 136.33345 * 8 7 5 11 11 C 1.52730 * 59.94708 * 107.45824 * 10 8 7 12 12 C 1.53218 * 117.84888 * 107.73552 * 11 10 8 13 13 C 1.53267 * 108.61791 * 197.02296 * 12 11 10 14 14 N 1.46806 * 109.44244 * 304.41624 * 13 12 11 15 15 C 1.46904 * 110.99783 * 189.19928 * 14 13 12 16 16 C 1.50700 * 109.47025 * 300.21790 * 15 14 13 17 17 O 1.21292 * 119.99995 * 354.33808 * 16 15 14 18 18 N 1.34783 * 119.99915 * 174.33452 * 16 15 14 19 19 C 1.37098 * 119.99564 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00300 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99617 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99912 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99900 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47330 * 89.99896 * 23 21 19 25 25 H 1.48502 * 109.47338 * 209.99517 * 23 21 19 26 26 H 1.48501 * 109.47508 * 329.99677 * 23 21 19 27 27 C 1.46805 * 111.58896 * 64.82094 * 14 13 12 28 28 C 1.53214 * 117.84351 * 252.26854 * 11 10 8 29 29 H 1.09002 * 109.47346 * 300.00018 * 1 2 3 30 30 H 1.09004 * 109.46878 * 60.00730 * 1 2 3 31 31 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99751 * 0.02562 * 7 5 2 33 33 H 1.09007 * 117.50502 * 214.92736 * 10 8 7 34 34 H 1.08999 * 117.50701 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.61114 * 316.75903 * 12 11 10 36 36 H 1.08999 * 109.61260 * 77.28482 * 12 11 10 37 37 H 1.09000 * 109.47124 * 184.41972 * 13 12 11 38 38 H 1.09004 * 109.47903 * 64.41057 * 13 12 11 39 39 H 1.09001 * 109.47408 * 60.21909 * 15 14 13 40 40 H 1.08998 * 109.47221 * 180.21809 * 15 14 13 41 41 H 0.96997 * 120.00111 * 0.02562 * 18 16 15 42 42 H 0.97001 * 119.99963 * 180.02562 * 22 21 19 43 43 H 1.09003 * 109.47569 * 175.18900 * 27 14 13 44 44 H 1.08995 * 109.48036 * 55.17327 * 27 14 13 45 45 H 1.09006 * 109.61146 * 282.71246 * 28 11 10 46 46 H 1.09000 * 109.61779 * 43.05711 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.3370 -1.5394 1.7785 7 7 3.2543 -0.4246 1.7220 8 6 3.7423 -1.1148 2.9184 9 1 3.0059 -1.7228 3.4439 10 6 5.1903 -1.6104 2.9081 11 6 4.8008 -0.4044 3.7604 12 6 4.7470 -0.5896 5.2804 13 6 3.9458 0.5680 5.8863 14 7 4.5421 1.8442 5.4726 15 6 3.9406 2.9677 6.2035 16 6 2.4594 3.0100 5.9293 17 8 1.9708 2.2514 5.1187 18 7 1.6776 3.8907 6.5848 19 6 0.3300 3.9287 6.3356 20 1 -0.1051 3.2533 5.6138 21 6 -0.4760 4.8370 7.0110 22 7 0.0534 5.6591 7.8889 23 14 -2.3120 4.8894 6.6711 24 1 -3.0130 3.9603 7.5934 25 1 -2.8155 6.2704 6.8828 26 1 -2.5674 4.4794 5.2668 27 6 4.4377 2.0442 4.0220 28 6 5.2698 0.9793 3.2991 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8102 0.2386 1.2839 33 1 5.4064 -2.5446 3.4267 34 1 5.7800 -1.4234 2.0107 35 1 4.2591 -1.5352 5.5167 36 1 5.7589 -0.5856 5.6855 37 1 3.9649 0.4933 6.9735 38 1 2.9145 0.5185 5.5367 39 1 4.1086 2.8373 7.2726 40 1 4.3977 3.9011 5.8752 41 1 2.0683 4.4975 7.2328 42 1 -0.5093 6.2930 8.3607 43 1 4.8119 3.0349 3.7639 44 1 3.3947 1.9590 3.7175 45 1 6.3238 1.1092 3.5452 46 1 5.1315 1.0723 2.2219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713839199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:40 Heat of formation + Delta-G solvation = -138.286244 kcal Electronic energy + Delta-G solvation = -31928.007020 eV Core-core repulsion = 27296.245647 eV Total energy + Delta-G solvation = -4631.761373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.39904 -47.39020 -40.41053 -39.31665 -38.18250 -35.95480 -33.94813 -33.38164 -31.71389 -31.35962 -30.77515 -30.07962 -26.40374 -25.43415 -24.14084 -23.19822 -22.15950 -21.44987 -20.82906 -19.39193 -19.14616 -18.38485 -17.96922 -17.75046 -16.94900 -16.12808 -15.98636 -15.70121 -15.07703 -14.82675 -14.80646 -14.61299 -14.29062 -14.12770 -13.99684 -13.86210 -13.70207 -13.57862 -13.52240 -13.01615 -12.75630 -12.73627 -12.55584 -12.31446 -12.17551 -11.99830 -11.87995 -11.62843 -11.49923 -11.21837 -11.17481 -10.71393 -10.61751 -10.43080 -10.31184 -10.27007 -10.18483 -9.71904 -9.48793 -9.17801 -8.86298 -8.00971 -7.41352 -6.46787 -3.87950 1.95515 2.38241 3.13165 3.22832 3.28272 3.48824 3.70702 3.75044 3.82110 4.13526 4.22135 4.34214 4.36133 4.58580 4.64915 4.70691 4.92948 5.03880 5.19221 5.22036 5.38023 5.40251 5.47804 5.59560 5.66431 5.68334 5.72391 5.74909 5.85811 5.89099 5.97268 6.06324 6.07127 6.16964 6.20665 6.26238 6.31157 6.60556 6.75142 7.03525 7.37696 7.48508 7.49757 7.67565 7.99917 8.54863 9.11992 9.48307 9.99038 10.69816 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009218 B = 0.003845 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.747709 B = 7280.600389 C = 9464.211713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.282 3.718 3 F -0.186 7.186 4 F -0.185 7.185 5 C 0.493 3.507 6 O -0.500 6.500 7 N -0.677 5.677 8 C 0.084 3.916 9 H 0.139 0.861 10 C -0.184 4.184 11 C -0.112 4.112 12 C -0.073 4.073 13 C 0.042 3.958 14 N -0.513 5.513 15 C 0.042 3.958 16 C 0.405 3.595 17 O -0.591 6.591 18 N -0.557 5.557 19 C -0.301 4.301 20 H 0.102 0.898 21 C 0.025 3.975 22 N -0.899 5.899 23 Si 0.928 3.072 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.043 3.957 28 C -0.074 4.074 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.407 0.593 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.978 -10.177 -11.023 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.243 3.757 3 F -0.167 7.167 4 F -0.166 7.166 5 C 0.274 3.726 6 O -0.374 6.374 7 N -0.327 5.327 8 C -0.022 4.022 9 H 0.156 0.844 10 C -0.222 4.222 11 C -0.113 4.113 12 C -0.111 4.111 13 C -0.086 4.086 14 N -0.236 5.236 15 C -0.090 4.090 16 C 0.191 3.809 17 O -0.478 6.478 18 N -0.192 5.192 19 C -0.431 4.431 20 H 0.119 0.881 21 C -0.178 4.178 22 N -0.540 5.540 23 Si 0.755 3.245 24 H -0.204 1.204 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.085 4.085 28 C -0.112 4.112 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.244 0.756 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.566 -11.124 -10.962 18.315 hybrid contribution -1.120 1.060 -0.218 1.557 sum 8.447 -10.064 -11.180 17.252 Atomic orbital electron populations 1.22656 0.88581 1.06737 1.06163 1.21362 0.96151 0.75689 0.82532 1.93090 1.90398 1.36561 1.96616 1.93075 1.90579 1.80838 1.52111 1.20644 0.82448 0.83822 0.85689 1.90775 1.55516 1.32438 1.58629 1.45311 1.16757 1.42004 1.28612 1.21849 0.91806 0.99968 0.88533 0.84379 1.23605 0.97329 0.98986 1.02324 1.21989 1.01184 0.93608 0.94510 1.21193 1.00997 0.98019 0.90877 1.22259 0.99056 0.88232 0.99086 1.62244 1.54270 1.01637 1.05443 1.22051 0.91919 0.95313 0.99740 1.21125 0.89187 0.84772 0.85827 1.90430 1.75440 1.43815 1.38130 1.42055 1.08013 1.32254 1.36920 1.19695 0.82593 1.18386 1.22423 0.88057 1.25268 1.00660 0.95810 0.96018 1.69607 1.36835 1.21555 1.25966 0.85886 0.82136 0.77419 0.79036 1.20351 1.20845 1.19449 1.22233 1.01183 0.97182 0.87891 1.21138 1.00345 0.91810 0.97951 0.88267 0.89090 0.88118 0.75649 0.87801 0.88531 0.91622 0.90856 0.91688 0.90715 0.89447 0.89419 0.77419 0.91782 0.91795 0.90560 0.90760 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.92 37.16 0.33 -1.64 16 2 C 0.28 3.49 2.47 -27.88 -0.07 3.42 16 3 F -0.19 -2.41 16.51 2.25 0.04 -2.38 16 4 F -0.18 -2.22 17.05 2.25 0.04 -2.18 16 5 C 0.49 7.03 7.23 -10.98 -0.08 6.95 16 6 O -0.50 -8.42 15.66 5.56 0.09 -8.34 16 7 N -0.68 -8.65 5.28 -53.90 -0.28 -8.93 16 8 C 0.08 1.06 6.10 -68.03 -0.42 0.64 16 9 H 0.14 1.97 7.40 -51.93 -0.38 1.59 16 10 C -0.18 -1.80 9.93 -26.84 -0.27 -2.07 16 11 C -0.11 -1.33 2.02 -154.54 -0.31 -1.64 16 12 C -0.07 -0.91 5.87 -26.48 -0.16 -1.06 16 13 C 0.04 0.66 4.96 -3.74 -0.02 0.64 16 14 N -0.51 -8.16 4.78 -235.88 -1.13 -9.28 16 15 C 0.04 0.72 5.82 -4.97 -0.03 0.69 16 16 C 0.41 9.11 7.19 -10.98 -0.08 9.03 16 17 O -0.59 -14.84 11.30 5.55 0.06 -14.77 16 18 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 23 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.04 0.67 5.05 -3.74 -0.02 0.65 16 28 C -0.07 -0.90 5.67 -26.48 -0.15 -1.05 16 29 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.02 7.87 -51.93 -0.41 0.61 16 32 H 0.41 4.52 6.40 -40.82 -0.26 4.26 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.07 1.49 5.79 -51.93 -0.30 1.19 16 39 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 40 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 41 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.06 0.95 8.02 -51.93 -0.42 0.54 16 44 H 0.08 1.48 5.79 -51.93 -0.30 1.18 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.59 6.19 -51.93 -0.32 0.27 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -30.90 378.20 -7.79 -38.68 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -6.44 Total: 16.15 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.50 Total: 6.73 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.75 Total: -55.49 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.15 Total: -23.11 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.08 Total: -4.56 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.90 -7.79 -38.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713839199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.602 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds