Wall clock time and date at job start Wed Apr 1 2020 04:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39901 * 109.47128 * 2 1 4 4 F 1.39903 * 109.47276 * 239.99664 * 2 1 3 5 5 C 1.50700 * 109.46811 * 120.00096 * 2 1 3 6 6 O 1.21280 * 120.00499 * 25.00058 * 5 2 1 7 7 N 1.34782 * 119.99824 * 204.99904 * 5 2 1 8 8 C 1.46491 * 120.00078 * 179.97438 * 7 5 2 9 9 H 1.09000 * 115.55831 * 350.58333 * 8 7 5 10 10 C 1.53049 * 117.53204 * 136.33345 * 8 7 5 11 11 C 1.52730 * 59.94708 * 107.45824 * 10 8 7 12 12 C 1.53218 * 117.84888 * 107.73552 * 11 10 8 13 13 C 1.53267 * 108.61791 * 197.02296 * 12 11 10 14 14 N 1.46806 * 109.44244 * 304.41624 * 13 12 11 15 15 C 1.46904 * 110.99783 * 189.19928 * 14 13 12 16 16 C 1.50700 * 109.47025 * 300.21790 * 15 14 13 17 17 O 1.21292 * 119.99995 * 354.33808 * 16 15 14 18 18 N 1.34783 * 119.99915 * 174.33452 * 16 15 14 19 19 C 1.37098 * 119.99564 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00300 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99617 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99912 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99900 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47330 * 89.99896 * 23 21 19 25 25 H 1.48502 * 109.47338 * 209.99517 * 23 21 19 26 26 H 1.48501 * 109.47508 * 329.99677 * 23 21 19 27 27 C 1.46805 * 111.58896 * 64.82094 * 14 13 12 28 28 C 1.53214 * 117.84351 * 252.26854 * 11 10 8 29 29 H 1.09002 * 109.47346 * 300.00018 * 1 2 3 30 30 H 1.09004 * 109.46878 * 60.00730 * 1 2 3 31 31 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99751 * 0.02562 * 7 5 2 33 33 H 1.09007 * 117.50502 * 214.92736 * 10 8 7 34 34 H 1.08999 * 117.50701 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.61114 * 316.75903 * 12 11 10 36 36 H 1.08999 * 109.61260 * 77.28482 * 12 11 10 37 37 H 1.09000 * 109.47124 * 184.41972 * 13 12 11 38 38 H 1.09004 * 109.47903 * 64.41057 * 13 12 11 39 39 H 1.09001 * 109.47408 * 60.21909 * 15 14 13 40 40 H 1.08998 * 109.47221 * 180.21809 * 15 14 13 41 41 H 0.96997 * 120.00111 * 0.02562 * 18 16 15 42 42 H 0.97001 * 119.99963 * 180.02562 * 22 21 19 43 43 H 1.09003 * 109.47569 * 175.18900 * 27 14 13 44 44 H 1.08995 * 109.48036 * 55.17327 * 27 14 13 45 45 H 1.09006 * 109.61146 * 282.71246 * 28 11 10 46 46 H 1.09000 * 109.61779 * 43.05711 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.3370 -1.5394 1.7785 7 7 3.2543 -0.4246 1.7220 8 6 3.7423 -1.1148 2.9184 9 1 3.0059 -1.7228 3.4439 10 6 5.1903 -1.6104 2.9081 11 6 4.8008 -0.4044 3.7604 12 6 4.7470 -0.5896 5.2804 13 6 3.9458 0.5680 5.8863 14 7 4.5421 1.8442 5.4726 15 6 3.9406 2.9677 6.2035 16 6 2.4594 3.0100 5.9293 17 8 1.9708 2.2514 5.1187 18 7 1.6776 3.8907 6.5848 19 6 0.3300 3.9287 6.3356 20 1 -0.1051 3.2533 5.6138 21 6 -0.4760 4.8370 7.0110 22 7 0.0534 5.6591 7.8889 23 14 -2.3120 4.8894 6.6711 24 1 -3.0130 3.9603 7.5934 25 1 -2.8155 6.2704 6.8828 26 1 -2.5674 4.4794 5.2668 27 6 4.4377 2.0442 4.0220 28 6 5.2698 0.9793 3.2991 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8102 0.2386 1.2839 33 1 5.4064 -2.5446 3.4267 34 1 5.7800 -1.4234 2.0107 35 1 4.2591 -1.5352 5.5167 36 1 5.7589 -0.5856 5.6855 37 1 3.9649 0.4933 6.9735 38 1 2.9145 0.5185 5.5367 39 1 4.1086 2.8373 7.2726 40 1 4.3977 3.9011 5.8752 41 1 2.0683 4.4975 7.2328 42 1 -0.5093 6.2930 8.3607 43 1 4.8119 3.0349 3.7639 44 1 3.3947 1.9590 3.7175 45 1 6.3238 1.1092 3.5452 46 1 5.1315 1.0723 2.2219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713839199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:39 Heat of formation + Delta-G solvation = -160.471877 kcal Electronic energy + Delta-G solvation = -31928.969061 eV Core-core repulsion = 27296.245647 eV Total energy + Delta-G solvation = -4632.723414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.41684 -48.40523 -41.52935 -40.72718 -39.58224 -37.35417 -35.82473 -34.55416 -33.33544 -32.66923 -31.91350 -31.31802 -27.97615 -26.52364 -25.81023 -24.33943 -23.13944 -22.66514 -21.91751 -21.09294 -20.28930 -19.93055 -19.32997 -18.92870 -18.02228 -17.70410 -17.14356 -16.94975 -16.49206 -16.27188 -16.07569 -15.93769 -15.68436 -15.57356 -15.36989 -15.22447 -14.75571 -14.71594 -14.64288 -14.47195 -13.81823 -13.67466 -13.59182 -13.47757 -13.33309 -13.19236 -13.17990 -13.06427 -12.93574 -12.78437 -12.46129 -12.40467 -12.17051 -11.98362 -11.78494 -11.45651 -11.38014 -11.26977 -10.95184 -10.68986 -10.00347 -9.85365 -8.98569 -8.48012 -5.97763 0.84536 1.32952 1.36572 1.37352 1.49334 2.01430 2.26339 2.47298 2.76427 2.77032 3.06180 3.17953 3.26155 3.27281 3.37077 3.60556 3.68125 3.80673 3.91546 4.24833 4.38018 4.39851 4.41277 4.47298 4.52682 4.58393 4.64750 4.67053 4.76109 4.80723 4.85990 4.89385 4.96408 4.97743 5.07279 5.23541 5.25273 5.31806 5.36205 5.48330 5.90895 5.99050 6.07908 6.16543 6.57599 6.63113 7.10388 7.54225 8.09822 8.67271 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009218 B = 0.003845 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.747709 B = 7280.600389 C = 9464.211713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.287 3.713 3 F -0.190 7.190 4 F -0.180 7.180 5 C 0.483 3.517 6 O -0.535 6.535 7 N -0.669 5.669 8 C 0.053 3.947 9 H 0.114 0.886 10 C -0.144 4.144 11 C -0.119 4.119 12 C -0.066 4.066 13 C 0.042 3.958 14 N -0.497 5.497 15 C 0.049 3.951 16 C 0.406 3.594 17 O -0.618 6.618 18 N -0.571 5.571 19 C -0.331 4.331 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.987 3.013 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.275 1.275 27 C 0.042 3.958 28 C -0.067 4.067 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.414 0.586 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.027 0.973 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.095 0.905 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.989 -10.514 -11.608 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.247 3.753 3 F -0.171 7.171 4 F -0.161 7.161 5 C 0.265 3.735 6 O -0.412 6.412 7 N -0.319 5.319 8 C -0.052 4.052 9 H 0.132 0.868 10 C -0.182 4.182 11 C -0.121 4.121 12 C -0.104 4.104 13 C -0.086 4.086 14 N -0.220 5.220 15 C -0.083 4.083 16 C 0.194 3.806 17 O -0.506 6.506 18 N -0.208 5.208 19 C -0.461 4.461 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.811 3.189 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.200 1.200 27 C -0.086 4.086 28 C -0.105 4.105 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.253 0.747 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.113 0.887 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.627 -11.450 -11.548 19.991 hybrid contribution -1.683 1.127 -0.043 2.027 sum 9.943 -10.322 -11.590 18.433 Atomic orbital electron populations 1.22695 0.87405 1.07264 1.06701 1.21304 0.96881 0.75210 0.81863 1.93081 1.90555 1.36824 1.96606 1.93082 1.90617 1.80736 1.51671 1.21044 0.82622 0.83641 0.86214 1.90749 1.56439 1.34117 1.59872 1.45320 1.16387 1.41760 1.28395 1.21894 0.92951 1.01279 0.89063 0.86840 1.23674 0.94112 0.98369 1.02018 1.22009 1.01152 0.94621 0.94277 1.21164 1.01405 0.96590 0.91227 1.22223 0.97207 0.89748 0.99412 1.62379 1.52809 1.01126 1.05654 1.22166 0.87782 0.97052 1.01342 1.22226 0.91286 0.82979 0.84156 1.90450 1.76771 1.44427 1.38946 1.42128 1.07452 1.33352 1.37893 1.19584 0.84328 1.19096 1.23107 0.90814 1.25969 1.04389 0.95098 0.95551 1.69662 1.38192 1.21792 1.26275 0.85017 0.77359 0.78026 0.78492 1.19756 1.19334 1.19995 1.22232 0.99438 0.99108 0.87823 1.21109 1.00561 0.90423 0.98367 0.89659 0.86563 0.87658 0.74718 0.85928 0.86496 0.90846 0.88727 0.91451 0.95452 0.87460 0.87282 0.77071 0.91281 0.91163 0.94896 0.88698 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 8.92 71.98 0.64 -3.31 16 2 C 0.29 7.11 2.47 29.85 0.07 7.18 16 3 F -0.19 -4.91 16.51 44.97 0.74 -4.17 16 4 F -0.18 -4.18 17.05 44.97 0.77 -3.41 16 5 C 0.48 14.15 7.23 87.66 0.63 14.78 16 6 O -0.54 -18.90 15.66 -3.03 -0.05 -18.95 16 7 N -0.67 -17.02 5.28 -442.84 -2.34 -19.36 16 8 C 0.05 1.32 6.10 44.93 0.27 1.60 16 9 H 0.11 3.38 7.40 -2.39 -0.02 3.37 16 10 C -0.14 -2.35 9.93 30.52 0.30 -2.04 16 11 C -0.12 -2.60 2.02 -52.20 -0.11 -2.70 16 12 C -0.07 -1.53 5.87 30.76 0.18 -1.35 16 13 C 0.04 1.34 4.96 86.41 0.43 1.77 16 14 N -0.50 -15.27 4.78 -900.20 -4.30 -19.57 16 15 C 0.05 1.64 5.82 85.56 0.50 2.13 16 16 C 0.41 18.77 7.19 87.66 0.63 19.40 16 17 O -0.62 -32.60 11.30 -3.07 -0.03 -32.63 16 18 N -0.57 -29.08 5.29 -306.97 -1.62 -30.71 16 19 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 20 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 21 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 22 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 23 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 27 C 0.04 1.28 5.05 86.41 0.44 1.71 16 28 C -0.07 -1.45 5.67 30.75 0.17 -1.27 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 30 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.10 2.17 7.87 -2.39 -0.02 2.15 16 32 H 0.41 8.86 6.40 -92.71 -0.59 8.27 16 33 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 38 H 0.03 1.14 5.79 -2.38 -0.01 1.13 16 39 H 0.11 3.23 8.13 -2.39 -0.02 3.22 16 40 H 0.11 3.26 8.04 -2.39 -0.02 3.24 16 41 H 0.40 19.23 7.90 -92.71 -0.73 18.49 16 42 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 43 H 0.07 2.01 8.02 -2.39 -0.02 1.99 16 44 H 0.03 1.31 5.79 -2.39 -0.01 1.30 16 45 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.07 1.32 6.19 -2.39 -0.01 1.31 16 Total: -1.00 -70.07 378.20 0.64 -69.43 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: -0.29 Total: 43.54 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 5.45 Total: 19.81 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -7.98 Total: -118.99 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.08 Total: -51.58 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 1.51 Total: -7.58 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.07 0.64 -69.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713839199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.042 kcal (2) G-P(sol) polarization free energy of solvation -70.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds