Wall clock time and date at job start Wed Apr 1 2020 04:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39899 * 109.47477 * 2 1 4 4 F 1.39905 * 109.47149 * 239.99947 * 2 1 3 5 5 C 1.50702 * 109.47249 * 120.00362 * 2 1 3 6 6 O 1.21280 * 119.99971 * 334.99197 * 5 2 1 7 7 N 1.34778 * 120.00356 * 155.00160 * 5 2 1 8 8 C 1.46499 * 119.99905 * 179.97438 * 7 5 2 9 9 H 1.08996 * 115.57071 * 9.27646 * 8 7 5 10 10 C 1.53052 * 117.50031 * 223.55362 * 8 7 5 11 11 C 1.52735 * 117.50195 * 154.99775 * 8 7 5 12 12 C 1.53221 * 117.84507 * 359.73107 * 11 8 7 13 13 C 1.53258 * 108.62081 * 162.99100 * 12 11 8 14 14 N 1.46807 * 109.44595 * 55.60197 * 13 12 11 15 15 C 1.46902 * 111.00067 * 170.80693 * 14 13 12 16 16 C 1.50704 * 109.47354 * 64.86876 * 15 14 13 17 17 O 1.21292 * 119.99879 * 354.42706 * 16 15 14 18 18 N 1.34769 * 119.99929 * 174.43103 * 16 15 14 19 19 C 1.37093 * 119.99923 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00327 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00034 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00245 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00193 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47269 * 89.99751 * 23 21 19 25 25 H 1.48501 * 109.47564 * 209.99997 * 23 21 19 26 26 H 1.48499 * 109.47007 * 329.99873 * 23 21 19 27 27 C 1.46818 * 111.56580 * 295.16784 * 14 13 12 28 28 C 1.53216 * 117.84840 * 215.22031 * 11 8 7 29 29 H 1.08999 * 109.46637 * 300.00074 * 1 2 3 30 30 H 1.08999 * 109.46885 * 60.00176 * 1 2 3 31 31 H 1.09005 * 109.46841 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99814 * 359.97438 * 7 5 2 33 33 H 1.09007 * 117.50278 * 145.06124 * 10 8 7 34 34 H 1.08999 * 117.53818 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.61295 * 43.24422 * 12 11 8 36 36 H 1.09007 * 109.61081 * 282.73188 * 12 11 8 37 37 H 1.08998 * 109.47485 * 295.60469 * 13 12 11 38 38 H 1.09005 * 109.47127 * 175.59191 * 13 12 11 39 39 H 1.08996 * 109.46856 * 304.86591 * 15 14 13 40 40 H 1.09003 * 109.47159 * 184.86888 * 15 14 13 41 41 H 0.97002 * 120.00073 * 0.02562 * 18 16 15 42 42 H 0.97007 * 120.00445 * 180.02562 * 22 21 19 43 43 H 1.09004 * 109.47528 * 184.82160 * 27 14 13 44 44 H 1.08995 * 109.47590 * 304.84155 * 27 14 13 45 45 H 1.09002 * 109.61041 * 316.75095 * 28 11 8 46 46 H 1.09005 * 109.61064 * 77.26938 * 28 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0324 -0.7105 1.2304 6 8 1.3371 -0.7705 2.2223 7 7 3.2544 -1.2790 1.2287 8 6 3.7429 -1.9692 2.4250 9 1 3.0075 -2.1177 3.2157 10 6 5.1919 -1.7136 2.8462 11 6 4.7989 -3.0554 2.2309 12 6 5.2676 -3.3508 0.8023 13 6 6.5857 -4.1296 0.8709 14 7 6.3988 -5.3359 1.6864 15 6 7.5703 -6.2177 1.5984 16 6 8.7654 -5.5273 2.2035 17 8 8.6782 -4.3747 2.5709 18 7 9.9311 -6.1906 2.3364 19 6 11.0184 -5.5624 2.8864 20 1 10.9410 -4.5358 3.2129 21 6 12.2203 -6.2461 3.0229 22 7 12.3147 -7.4950 2.6253 23 14 13.7021 -5.3899 3.7717 24 1 13.7031 -5.5976 5.2422 25 1 14.9464 -5.9554 3.1911 26 1 13.6348 -3.9360 3.4772 27 6 6.0961 -5.0012 3.0835 28 6 4.7472 -4.2772 3.1540 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.8104 -1.2312 0.4353 33 1 5.4097 -1.6940 3.9141 34 1 5.7822 -1.0324 2.2333 35 1 5.4235 -2.4140 0.2673 36 1 4.5157 -3.9485 0.2868 37 1 7.3554 -3.5025 1.3206 38 1 6.8918 -4.4152 -0.1356 39 1 7.7744 -6.4474 0.5526 40 1 7.3712 -7.1418 2.1411 41 1 10.0009 -7.1123 2.0421 42 1 13.1537 -7.9724 2.7209 43 1 6.0488 -5.9160 3.6744 44 1 6.8777 -4.3528 3.4794 45 1 4.5582 -3.9543 4.1778 46 1 3.9536 -4.9492 2.8272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713839200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:43 Heat of formation + Delta-G solvation = -140.565445 kcal Electronic energy + Delta-G solvation = -30740.130401 eV Core-core repulsion = 26108.270194 eV Total energy + Delta-G solvation = -4631.860206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.63920 -47.63521 -40.49612 -39.46303 -38.24101 -36.04725 -34.01148 -33.46694 -31.99094 -31.37963 -30.78618 -30.07655 -26.42257 -25.62531 -24.22019 -23.22616 -22.35050 -21.52178 -20.93215 -19.39246 -19.09418 -18.50783 -18.19452 -17.79580 -17.19953 -16.31110 -16.02432 -15.83582 -15.10484 -15.04701 -14.85336 -14.63464 -14.47946 -14.33705 -13.94813 -13.91340 -13.89782 -13.80119 -13.43405 -13.26472 -13.07393 -12.88696 -12.75588 -12.42919 -12.16173 -11.99995 -11.90119 -11.75017 -11.46615 -11.29416 -11.19041 -10.64317 -10.60890 -10.49238 -10.44916 -10.29142 -10.26176 -9.82156 -9.50978 -9.22563 -8.95292 -8.03366 -7.42772 -6.48774 -3.90200 1.69392 2.15982 3.11468 3.21352 3.25660 3.26603 3.49114 3.68082 3.79816 3.98797 4.08442 4.11555 4.32987 4.50710 4.63916 4.73799 4.92226 4.93372 5.02334 5.06977 5.17296 5.32985 5.39372 5.47510 5.59107 5.68290 5.70696 5.78946 5.81249 5.89488 5.97476 6.05782 6.06256 6.09266 6.17876 6.25416 6.28765 6.58696 6.73424 6.83391 7.36678 7.43748 7.47562 7.47677 7.97677 8.52468 9.09647 9.46113 9.96566 10.67665 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.023903 B = 0.002037 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.138829 B =13743.530466 C =13947.525238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.282 3.718 3 F -0.181 7.181 4 F -0.188 7.188 5 C 0.489 3.511 6 O -0.504 6.504 7 N -0.677 5.677 8 C 0.070 3.930 9 H 0.139 0.861 10 C -0.172 4.172 11 C -0.108 4.108 12 C -0.076 4.076 13 C 0.045 3.955 14 N -0.514 5.514 15 C 0.042 3.958 16 C 0.406 3.594 17 O -0.593 6.593 18 N -0.557 5.557 19 C -0.302 4.302 20 H 0.102 0.898 21 C 0.024 3.976 22 N -0.898 5.898 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.044 3.956 28 C -0.074 4.074 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.409 0.591 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.393 0.607 42 H 0.273 0.727 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.626 9.182 -5.653 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.242 3.758 3 F -0.162 7.162 4 F -0.169 7.169 5 C 0.270 3.730 6 O -0.378 6.378 7 N -0.326 5.326 8 C -0.035 4.035 9 H 0.157 0.843 10 C -0.210 4.210 11 C -0.110 4.110 12 C -0.114 4.114 13 C -0.083 4.083 14 N -0.238 5.238 15 C -0.090 4.090 16 C 0.191 3.809 17 O -0.481 6.481 18 N -0.192 5.192 19 C -0.432 4.432 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.539 5.539 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.084 4.084 28 C -0.111 4.111 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.245 0.755 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.399 9.531 -4.911 23.935 hybrid contribution 2.117 0.279 -0.078 2.136 sum -19.283 9.810 -4.989 22.202 Atomic orbital electron populations 1.22643 0.88650 1.06468 1.06231 1.21379 0.96006 0.76214 0.82217 1.93101 1.90518 1.36076 1.96554 1.93079 1.90459 1.80624 1.52743 1.20695 0.82663 0.80482 0.89183 1.90777 1.55906 1.58102 1.33023 1.45397 1.16552 1.53901 1.16767 1.21974 0.92311 0.99613 0.89633 0.84326 1.23606 0.95858 0.99103 1.02462 1.22006 1.00192 0.90878 0.97883 1.21157 0.98147 0.99207 0.92881 1.22213 0.96559 0.92140 0.97395 1.62251 1.34284 1.16774 1.10441 1.22049 0.88478 0.96619 1.01851 1.21120 0.85369 0.88324 0.86058 1.90414 1.83954 1.17985 1.55706 1.42060 1.09316 1.14455 1.53363 1.19696 0.88165 0.98747 1.36576 0.88009 1.25288 0.99276 0.95703 0.97589 1.69606 1.27711 1.09623 1.46927 0.85870 0.80094 0.79409 0.78992 1.20358 1.20851 1.19455 1.22237 0.96618 1.00015 0.89559 1.21198 0.98397 0.94326 0.97230 0.87999 0.89017 0.88674 0.75457 0.87614 0.88350 0.92353 0.91014 0.90505 0.91762 0.89394 0.89436 0.77387 0.91756 0.91658 0.90597 0.91548 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 8.92 37.16 0.33 -0.81 16 2 C 0.28 2.45 2.47 -27.88 -0.07 2.39 16 3 F -0.18 -1.77 17.05 2.25 0.04 -1.74 16 4 F -0.19 -1.66 16.51 2.25 0.04 -1.62 16 5 C 0.49 5.20 7.23 -10.98 -0.08 5.12 16 6 O -0.50 -6.57 15.66 5.56 0.09 -6.49 16 7 N -0.68 -6.79 5.28 -53.91 -0.28 -7.08 16 8 C 0.07 0.76 6.14 -68.04 -0.42 0.34 16 9 H 0.14 1.58 7.40 -51.93 -0.38 1.19 16 10 C -0.17 -1.98 9.85 -26.83 -0.26 -2.25 16 11 C -0.11 -1.28 2.02 -154.54 -0.31 -1.59 16 12 C -0.08 -0.91 5.30 -26.48 -0.14 -1.05 16 13 C 0.04 0.68 5.05 -3.74 -0.02 0.67 16 14 N -0.51 -8.09 4.78 -235.88 -1.13 -9.21 16 15 C 0.04 0.71 5.82 -4.97 -0.03 0.68 16 16 C 0.41 8.96 7.19 -10.99 -0.08 8.88 16 17 O -0.59 -14.57 11.30 5.55 0.06 -14.51 16 18 N -0.56 -13.58 5.29 -10.97 -0.06 -13.64 16 19 C -0.30 -8.17 9.68 -14.94 -0.14 -8.32 16 20 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -23.95 13.05 55.50 0.72 -23.22 16 23 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.04 0.68 4.96 -3.73 -0.02 0.66 16 28 C -0.07 -0.91 5.87 -26.48 -0.16 -1.07 16 29 H 0.10 0.65 7.87 -51.93 -0.41 0.24 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.41 3.58 6.79 -40.82 -0.28 3.31 16 33 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.61 6.95 -51.93 -0.36 0.25 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.44 5.79 -51.93 -0.30 1.14 16 38 H 0.06 0.94 8.02 -51.93 -0.42 0.53 16 39 H 0.09 1.37 8.04 -51.93 -0.42 0.95 16 40 H 0.09 1.37 8.13 -51.93 -0.42 0.94 16 41 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 44 H 0.08 1.45 5.78 -51.93 -0.30 1.15 16 45 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -30.24 378.95 -7.82 -38.06 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.50 Total: 13.91 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.49 Total: 4.17 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.75 Total: -53.15 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.15 Total: -21.00 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.24 -7.82 -38.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713839200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.501 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds