Wall clock time and date at job start Wed Apr 1 2020 04:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39904 * 109.46718 * 2 1 4 4 F 1.39897 * 109.46896 * 240.00844 * 2 1 3 5 5 C 1.50700 * 109.47413 * 120.00303 * 2 1 3 6 6 O 1.21280 * 119.99815 * 334.99935 * 5 2 1 7 7 N 1.34775 * 119.99862 * 155.00349 * 5 2 1 8 8 C 1.46499 * 119.99807 * 180.02562 * 7 5 2 9 9 C 1.52748 * 113.34460 * 77.67339 * 8 7 5 10 10 C 1.56052 * 101.97641 * 74.98590 * 9 8 7 11 11 C 1.55891 * 105.88481 * 25.92612 * 10 9 8 12 12 C 1.49128 * 104.18989 * 5.31749 * 11 10 9 13 13 H 1.08993 * 105.98292 * 74.59325 * 12 11 10 14 14 N 1.42330 * 131.09117 * 203.66771 * 12 11 10 15 15 C 1.46896 * 110.99837 * 277.60743 * 14 12 11 16 16 C 1.50700 * 109.47141 * 176.80678 * 15 14 12 17 17 O 1.21297 * 119.99731 * 354.32847 * 16 15 14 18 18 N 1.34770 * 120.00493 * 174.33378 * 16 15 14 19 19 C 1.37092 * 120.00359 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00134 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00302 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99914 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00184 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47324 * 89.99800 * 23 21 19 25 25 H 1.48506 * 109.46821 * 209.99792 * 23 21 19 26 26 H 1.48497 * 109.46970 * 329.99429 * 23 21 19 27 27 C 1.49730 * 105.64620 * 157.19996 * 14 12 11 28 28 C 1.52736 * 112.35336 * 298.97666 * 8 7 5 29 29 H 1.09007 * 109.47186 * 299.99283 * 1 2 3 30 30 H 1.09000 * 109.47794 * 59.99371 * 1 2 3 31 31 H 1.09003 * 109.47238 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00204 * 359.97438 * 7 5 2 33 33 H 1.09004 * 110.61972 * 317.08519 * 9 8 7 34 34 H 1.09001 * 111.43045 * 193.24942 * 9 8 7 35 35 H 1.08991 * 110.17029 * 266.82162 * 10 9 8 36 36 H 1.09003 * 110.23371 * 145.06141 * 10 9 8 37 37 H 1.08999 * 110.48254 * 246.63811 * 11 10 9 38 38 H 1.09004 * 110.48736 * 123.99605 * 11 10 9 39 39 H 1.08998 * 109.47647 * 296.80683 * 15 14 12 40 40 H 1.09007 * 109.46870 * 56.81086 * 15 14 12 41 41 H 0.97008 * 119.99555 * 359.97438 * 18 16 15 42 42 H 0.96999 * 120.00384 * 180.02562 * 22 21 19 43 43 H 1.09004 * 110.04460 * 233.47805 * 27 14 12 44 44 H 1.08995 * 110.04802 * 112.00695 * 27 14 12 45 45 H 1.09007 * 111.05619 * 165.02415 * 28 8 7 46 46 H 1.08997 * 111.06050 * 41.03310 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9963 -0.6593 -1.1424 5 6 2.0324 -0.7105 1.2304 6 8 1.3371 -0.7706 2.2223 7 7 3.2544 -1.2789 1.2285 8 6 3.7426 -1.9700 2.4244 9 6 3.1426 -3.3630 2.6058 10 6 3.9105 -4.1892 1.5273 11 6 5.2671 -3.4522 1.3111 12 6 5.2609 -2.3675 2.3346 13 1 5.4527 -2.8555 3.2902 14 7 5.9511 -1.1237 2.3837 15 6 7.3206 -1.3010 2.8844 16 6 8.0437 0.0207 2.8484 17 8 7.5109 0.9901 2.3506 18 7 9.2823 0.1258 3.3691 19 6 9.9398 1.3283 3.3367 20 1 9.4654 2.1914 2.8936 21 6 11.2167 1.4367 3.8740 22 7 11.7938 0.3866 4.4136 23 14 12.1123 3.0754 3.8306 24 1 11.7983 3.8440 5.0618 25 1 13.5763 2.8375 3.7554 26 1 11.6745 3.8473 2.6400 27 6 5.1515 -0.2543 3.3039 28 6 3.8435 -1.0404 3.6321 29 1 -0.3634 0.5138 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.8104 -1.2311 0.4351 33 1 2.0732 -3.3508 2.3954 34 1 3.3377 -3.7538 3.6045 35 1 3.3430 -4.2122 0.5971 36 1 4.0869 -5.2038 1.8846 37 1 5.3159 -3.0296 0.3076 38 1 6.1019 -4.1321 1.4808 39 1 7.2878 -1.6693 3.9098 40 1 7.8468 -2.0202 2.2566 41 1 9.7083 -0.6494 3.7674 42 1 12.6850 0.4623 4.7891 43 1 4.9081 0.6870 2.8110 44 1 5.7124 -0.0635 4.2188 45 1 3.9495 -1.6088 4.5561 46 1 2.9858 -0.3698 3.6829 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717834713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:55 Heat of formation + Delta-G solvation = -166.867488 kcal Electronic energy + Delta-G solvation = -32013.579231 eV Core-core repulsion = 27380.578482 eV Total energy + Delta-G solvation = -4633.000749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.30310 -48.31305 -42.46740 -40.39817 -39.68639 -36.64294 -35.79427 -34.81028 -33.32489 -32.83515 -32.18763 -29.62143 -27.95225 -27.57386 -26.02077 -25.79675 -22.78221 -22.25218 -21.29524 -20.76184 -20.51814 -19.82448 -19.59166 -18.87085 -18.05193 -17.54757 -17.35265 -16.79466 -16.55237 -16.45392 -16.24277 -16.03057 -15.69581 -15.60525 -15.25383 -14.96000 -14.63504 -14.62217 -14.37498 -14.27958 -14.10896 -13.65932 -13.54757 -13.43748 -13.41114 -13.32478 -13.06561 -13.05753 -12.90403 -12.69816 -12.43237 -12.20728 -12.13921 -12.08504 -11.91920 -11.56623 -11.50448 -11.36297 -10.93676 -10.31066 -10.28893 -10.01595 -9.28272 -8.47754 -5.96134 0.98786 1.36350 1.40227 1.50570 1.52854 2.04633 2.26557 2.51455 2.62553 2.84948 2.93150 3.18954 3.28607 3.40304 3.45824 3.60845 3.78793 3.93652 4.07529 4.16214 4.26391 4.29902 4.40751 4.44656 4.49091 4.50924 4.53327 4.57643 4.68628 4.71636 4.77127 4.90545 4.94228 5.00400 5.03544 5.16029 5.25757 5.33873 5.39892 5.43843 5.73892 5.96357 6.11867 6.20829 6.59963 6.73128 7.12393 7.55543 8.11859 8.69765 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.002839 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.489507 B = 9859.005603 C =10904.459802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.277 3.723 3 F -0.195 7.195 4 F -0.189 7.189 5 C 0.486 3.514 6 O -0.524 6.524 7 N -0.673 5.673 8 C 0.151 3.849 9 C -0.112 4.112 10 C -0.107 4.107 11 C -0.103 4.103 12 C 0.054 3.946 13 H 0.045 0.955 14 N -0.501 5.501 15 C 0.055 3.945 16 C 0.441 3.559 17 O -0.615 6.615 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.274 1.274 27 C 0.064 3.936 28 C -0.131 4.131 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.099 0.901 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.426 -12.483 -5.898 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.238 3.762 3 F -0.176 7.176 4 F -0.170 7.170 5 C 0.268 3.732 6 O -0.400 6.400 7 N -0.323 5.323 8 C 0.065 3.935 9 C -0.150 4.150 10 C -0.145 4.145 11 C -0.141 4.141 12 C -0.056 4.056 13 H 0.063 0.937 14 N -0.225 5.225 15 C -0.076 4.076 16 C 0.228 3.772 17 O -0.501 6.501 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.063 4.063 28 C -0.170 4.170 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.250 0.750 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.117 0.883 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.974 -11.679 -5.952 24.733 hybrid contribution 1.539 0.691 0.608 1.793 sum -19.435 -10.988 -5.344 22.957 Atomic orbital electron populations 1.22674 0.86371 1.07374 1.06935 1.21627 0.97376 0.75493 0.81723 1.93094 1.90877 1.37053 1.96563 1.93058 1.90698 1.80570 1.52671 1.20937 0.82649 0.80209 0.89431 1.90734 1.56652 1.59111 1.33530 1.45555 1.16017 1.53829 1.16932 1.21787 0.94626 0.92292 0.84806 1.22397 1.00115 0.91243 1.01272 1.22811 0.93471 0.99346 0.98882 1.21379 0.99435 0.94947 0.98320 1.21883 0.91529 0.91049 1.01126 0.93661 1.61971 1.00319 1.11924 1.48288 1.21965 0.90320 0.94624 1.00693 1.20740 0.82619 0.91277 0.82568 1.90509 1.68055 1.41231 1.50295 1.41918 1.14384 1.11838 1.53068 1.19622 0.98794 0.89675 1.38025 0.90541 1.25999 0.96987 1.02305 0.95863 1.69664 1.16412 1.30802 1.39259 0.84963 0.77463 0.77440 0.78695 1.19704 1.19411 1.19894 1.23358 0.92720 0.96418 0.93801 1.22776 0.97041 0.99149 0.98071 0.88322 0.87343 0.87471 0.74966 0.91000 0.88491 0.90651 0.89039 0.91230 0.89495 0.91235 0.86980 0.77035 0.91296 0.93012 0.93964 0.88295 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 8.92 71.98 0.64 -1.83 16 2 C 0.28 5.80 2.47 29.85 0.07 5.87 16 3 F -0.19 -5.08 17.05 44.97 0.77 -4.32 16 4 F -0.19 -3.83 16.51 44.97 0.74 -3.09 16 5 C 0.49 11.60 6.86 87.66 0.60 12.21 16 6 O -0.52 -14.16 14.36 -3.03 -0.04 -14.20 16 7 N -0.67 -15.54 4.76 -417.02 -1.99 -17.52 16 8 C 0.15 3.33 0.31 4.91 0.00 3.33 16 9 C -0.11 -1.80 6.13 31.57 0.19 -1.61 16 10 C -0.11 -1.37 6.83 32.65 0.22 -1.15 16 11 C -0.10 -1.73 6.40 30.36 0.19 -1.53 16 12 C 0.05 1.23 2.09 46.01 0.10 1.33 16 13 H 0.05 0.97 7.17 -2.39 -0.02 0.95 16 14 N -0.50 -15.97 4.92 -870.74 -4.28 -20.25 16 15 C 0.05 1.88 5.04 85.56 0.43 2.32 16 16 C 0.44 21.11 7.32 87.66 0.64 21.75 16 17 O -0.62 -34.54 15.08 -3.08 -0.05 -34.59 16 18 N -0.57 -29.61 5.29 -306.99 -1.62 -31.23 16 19 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 23 Si 0.99 43.37 29.55 68.60 2.03 45.40 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C 0.06 2.15 5.52 86.82 0.48 2.63 16 28 C -0.13 -3.41 5.93 31.58 0.19 -3.22 16 29 H 0.10 1.46 7.87 -2.38 -0.02 1.44 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.41 9.50 7.89 -92.71 -0.73 8.77 16 33 H 0.07 1.24 7.98 -2.39 -0.02 1.23 16 34 H 0.10 1.33 8.12 -2.39 -0.02 1.31 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.25 7.98 -2.39 -0.02 1.23 16 38 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.07 2.12 7.96 -2.39 -0.02 2.10 16 40 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 41 H 0.40 19.30 7.90 -92.70 -0.73 18.57 16 42 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 43 H 0.05 2.08 8.11 -2.38 -0.02 2.06 16 44 H 0.04 1.52 7.41 -2.39 -0.02 1.51 16 45 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.08 2.19 6.40 -2.39 -0.02 2.17 16 Total: -1.00 -70.65 378.13 0.45 -70.20 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -0.43 Total: 37.34 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 5.05 Total: 21.75 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -7.61 Total: -118.49 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -0.09 Total: -48.79 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 1.51 Total: -7.41 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -70.65 0.45 -70.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717834713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.666 kcal (2) G-P(sol) polarization free energy of solvation -70.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds