Wall clock time and date at job start Wed Apr 1 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46739 * 2 1 4 4 C 1.50703 * 109.47310 * 119.99630 * 2 1 3 5 5 O 1.21277 * 120.00032 * 243.64011 * 4 2 1 6 6 N 1.34773 * 119.99476 * 63.64383 * 4 2 1 7 7 C 1.47861 * 126.92994 * 354.89889 * 6 4 2 8 8 C 1.56022 * 105.11350 * 181.95737 * 7 6 4 9 9 H 1.08995 * 116.26298 * 158.85452 * 8 7 6 10 10 C 1.58887 * 100.01985 * 32.52508 * 8 7 6 11 11 C 1.49281 * 126.92425 * 174.92619 * 6 4 2 12 12 H 1.09004 * 116.12732 * 15.97980 * 11 6 4 13 13 C 1.56002 * 104.13266 * 246.86875 * 11 6 4 14 14 N 1.48289 * 105.15985 * 287.90641 * 13 11 6 15 15 C 1.46900 * 111.00468 * 122.58864 * 14 13 11 16 16 C 1.50698 * 109.46561 * 76.80718 * 15 14 13 17 17 O 1.21286 * 120.00664 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99590 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99890 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99922 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99861 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00106 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99947 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47010 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47435 * 119.99840 * 23 21 19 26 26 H 1.48504 * 109.46885 * 240.00285 * 23 21 19 27 27 C 1.52998 * 109.47170 * 240.00018 * 2 1 3 28 28 F 1.39900 * 109.47129 * 66.00546 * 27 2 1 29 29 F 1.39902 * 109.46715 * 186.00155 * 27 2 1 30 30 H 1.09001 * 109.47859 * 304.10144 * 1 2 3 31 31 H 1.09004 * 109.47706 * 64.10631 * 1 2 3 32 32 H 1.09006 * 109.47244 * 184.10137 * 1 2 3 33 33 H 1.08998 * 109.46805 * 175.10830 * 3 2 1 34 34 H 1.08998 * 109.47006 * 295.10312 * 3 2 1 35 35 H 1.09001 * 109.47210 * 55.10884 * 3 2 1 36 36 H 1.08999 * 110.31568 * 300.86485 * 7 6 4 37 37 H 1.08997 * 110.31407 * 62.95267 * 7 6 4 38 38 H 1.08999 * 113.28206 * 192.42527 * 10 8 7 39 39 H 1.09009 * 112.05588 * 64.49786 * 10 8 7 40 40 H 1.09003 * 110.32175 * 46.85395 * 13 11 6 41 41 H 1.09001 * 110.32770 * 168.95318 * 13 11 6 42 42 H 1.08995 * 109.47261 * 196.80843 * 15 14 13 43 43 H 1.09005 * 109.46965 * 316.81294 * 15 14 13 44 44 H 0.96994 * 120.00309 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99859 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.46981 * 306.00233 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.6741 -0.1034 2.0615 6 7 1.7684 -2.0201 1.4074 7 6 0.9194 -2.8784 0.5537 8 6 0.9257 -4.2757 1.2478 9 1 0.1013 -4.9429 0.9964 10 6 1.0373 -3.8286 2.7684 11 6 2.2739 -2.8966 2.5050 12 1 2.6914 -2.3863 3.3730 13 6 3.2154 -3.9083 1.7815 14 7 2.3105 -4.8091 1.0273 15 6 2.6308 -4.7974 -0.4063 16 6 3.8639 -5.6282 -0.6521 17 8 4.4207 -6.1765 0.2754 18 7 4.3479 -5.7620 -1.9029 19 6 5.4693 -6.5183 -2.1267 20 1 5.9646 -7.0072 -1.3008 21 6 5.9686 -6.6558 -3.4161 22 7 5.3656 -6.0613 -4.4210 23 14 7.4962 -7.6868 -3.7211 24 1 7.9814 -8.2457 -2.4336 25 1 7.1666 -8.7972 -4.6504 26 1 8.5554 -6.8366 -4.3216 27 6 2.0399 -0.7212 -1.2492 28 9 1.6897 0.0131 -2.3873 29 9 3.4322 -0.8418 -1.1823 30 1 -0.3635 0.5761 0.8509 31 1 -0.3635 0.4488 -0.9245 32 1 -0.3634 -1.0251 0.0735 33 1 3.1263 1.4439 0.0876 34 1 1.7499 1.9304 -0.9306 35 1 1.6067 1.9811 0.8429 36 1 -0.0952 -2.4826 0.5093 37 1 1.3411 -2.9504 -0.4488 38 1 1.2743 -4.6512 3.4431 39 1 0.1600 -3.2708 3.0965 40 1 3.8822 -3.3827 1.0979 41 1 3.7931 -4.4761 2.5109 42 1 1.7947 -5.2127 -0.9688 43 1 2.8130 -3.7725 -0.7295 44 1 3.9028 -5.3233 -2.6446 45 1 5.7140 -6.1576 -5.3212 46 1 1.5915 -1.7131 -1.3046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753424629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:46 Heat of formation + Delta-G solvation = -117.779669 kcal Electronic energy + Delta-G solvation = -32952.654206 eV Core-core repulsion = 28321.782065 eV Total energy + Delta-G solvation = -4630.872141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.21066 -47.15420 -41.51587 -39.30339 -37.88189 -35.59734 -34.22990 -33.62036 -31.42840 -30.94232 -29.95904 -27.71369 -26.82330 -26.57280 -25.62183 -24.27307 -22.95748 -21.10240 -20.40606 -19.68451 -18.79809 -18.01385 -17.78100 -17.66385 -17.32278 -16.61834 -16.55525 -15.81941 -15.29620 -15.22185 -14.78947 -14.49177 -14.09365 -13.99949 -13.86923 -13.73146 -13.60946 -13.50686 -13.37226 -13.06204 -12.99750 -12.66714 -12.53481 -12.27687 -12.19855 -12.12290 -12.08822 -11.76180 -11.57862 -11.52809 -11.43239 -11.23322 -11.13368 -10.91745 -10.84628 -10.33705 -10.21911 -10.06793 -9.50853 -9.00821 -8.50956 -8.03083 -7.95408 -6.41183 -3.81815 2.19140 2.47493 3.17010 3.27700 3.34681 3.40582 3.66909 3.75437 3.80469 3.90104 4.07271 4.09189 4.19093 4.31642 4.50972 4.54793 4.58209 4.73941 4.80728 4.88352 4.97318 5.11470 5.14560 5.24211 5.29648 5.31817 5.44561 5.45886 5.49463 5.54696 5.61063 5.64195 5.66593 5.70199 5.82716 5.91990 5.97448 6.21678 6.23507 6.83968 7.00115 7.19320 7.56099 7.79878 8.06305 8.61615 9.18910 9.54189 10.05829 10.76686 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.003725 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.505017 B = 7515.630984 C = 8856.621260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.132 4.132 4 C 0.548 3.452 5 O -0.522 6.522 6 N -0.618 5.618 7 C 0.044 3.956 8 C 0.050 3.950 9 H 0.138 0.862 10 C -0.128 4.128 11 C 0.108 3.892 12 H 0.127 0.873 13 C 0.038 3.962 14 N -0.478 5.478 15 C 0.030 3.970 16 C 0.444 3.556 17 O -0.574 6.574 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.264 3.736 28 F -0.195 7.195 29 F -0.191 7.191 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.863 11.752 7.968 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.135 4.135 3 C -0.189 4.189 4 C 0.336 3.664 5 O -0.397 6.397 6 N -0.353 5.353 7 C -0.080 4.080 8 C -0.059 4.059 9 H 0.156 0.844 10 C -0.167 4.167 11 C 0.005 3.995 12 H 0.145 0.855 13 C -0.090 4.090 14 N -0.201 5.201 15 C -0.102 4.102 16 C 0.229 3.771 17 O -0.457 6.457 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C 0.211 3.789 28 F -0.176 7.176 29 F -0.173 7.173 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.223 0.777 45 H 0.081 0.919 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.940 11.271 8.970 20.753 hybrid contribution 0.529 0.691 -1.446 1.687 sum -14.412 11.961 7.524 20.184 Atomic orbital electron populations 1.22043 0.90235 1.04026 1.04510 1.21934 0.99696 0.99211 0.92617 1.21688 1.02857 0.91205 1.03182 1.19598 0.79539 0.80214 0.87095 1.90716 1.39505 1.64735 1.44722 1.49236 1.49510 1.08022 1.28556 1.23776 0.95636 0.93139 0.95404 1.25220 0.94128 0.91415 0.95148 0.84405 1.24214 0.97336 0.99236 0.95892 1.24184 0.95648 0.89140 0.90506 0.85484 1.23686 0.94630 0.92295 0.98431 1.65127 1.00273 1.46912 1.07807 1.22225 0.99310 0.98913 0.89768 1.19634 0.87007 0.86406 0.84031 1.90524 1.61404 1.51162 1.42655 1.41854 1.26266 1.45377 1.06691 1.19735 1.03141 1.25624 0.94190 0.87884 1.25247 0.99467 0.98094 0.95086 1.69616 1.40860 1.43823 1.00025 0.85816 0.80860 0.79199 0.78577 1.19214 1.20741 1.20776 1.22072 0.77954 0.95965 0.82955 1.92987 1.91689 1.79953 1.52956 1.93069 1.31031 1.96754 1.96396 0.90466 0.90133 0.90754 0.90958 0.90880 0.90728 0.89715 0.90310 0.87962 0.90022 0.91910 0.88508 0.89189 0.93351 0.77651 0.91939 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.32 37.15 0.31 -0.75 16 2 C -0.13 -1.37 0.47 -155.66 -0.07 -1.44 16 3 C -0.13 -1.39 7.58 37.16 0.28 -1.11 16 4 C 0.55 7.10 6.20 -10.99 -0.07 7.03 16 5 O -0.52 -8.50 16.30 5.56 0.09 -8.41 16 6 N -0.62 -7.02 2.92 -156.81 -0.46 -7.48 16 7 C 0.04 0.40 4.40 -1.68 -0.01 0.39 16 8 C 0.05 0.48 5.18 -61.07 -0.32 0.16 16 9 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 10 C -0.13 -1.13 6.94 -21.25 -0.15 -1.28 16 11 C 0.11 1.25 5.19 -62.57 -0.32 0.92 16 12 H 0.13 1.46 8.03 -51.93 -0.42 1.05 16 13 C 0.04 0.57 5.44 -1.45 -0.01 0.56 16 14 N -0.48 -7.04 4.90 -216.71 -1.06 -8.10 16 15 C 0.03 0.49 4.15 -4.98 -0.02 0.47 16 16 C 0.44 10.31 7.64 -10.99 -0.08 10.22 16 17 O -0.57 -15.39 15.49 5.55 0.09 -15.30 16 18 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 23 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.26 3.10 4.00 37.16 0.15 3.24 16 28 F -0.19 -2.32 16.15 2.25 0.04 -2.29 16 29 F -0.19 -2.99 16.69 2.25 0.04 -2.95 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 32 H 0.07 0.43 4.62 -51.93 -0.24 0.19 16 33 H 0.07 0.90 7.95 -51.93 -0.41 0.49 16 34 H 0.07 0.67 7.51 -51.93 -0.39 0.28 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.52 5.60 -51.93 -0.29 0.23 16 37 H 0.08 0.76 2.97 -51.93 -0.15 0.61 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 40 H 0.06 1.12 7.41 -51.93 -0.38 0.73 16 41 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 42 H 0.09 1.27 8.01 -51.93 -0.42 0.86 16 43 H 0.05 0.76 6.05 -51.93 -0.31 0.45 16 44 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.11 1.13 4.67 -51.93 -0.24 0.88 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -34.36 365.25 -6.71 -41.08 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.04 Total: 9.42 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -0.55 Total: 10.49 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.85 Total: -53.70 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.18 Total: -23.71 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.07 Total: -5.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.36 -6.71 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753424629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.704 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds