Wall clock time and date at job start Wed Apr 1 2020 03:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46778 * 2 1 4 4 O 1.45192 * 109.47240 * 239.99778 * 2 1 3 5 5 C 1.34230 * 117.00404 * 90.00043 * 4 2 1 6 6 O 1.20826 * 119.99878 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99974 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.25091 * 300.52694 * 7 5 4 9 9 C 1.52734 * 109.22022 * 181.07858 * 7 5 4 10 10 C 1.53328 * 108.38351 * 188.64036 * 9 7 5 11 11 C 1.52741 * 108.38262 * 69.88092 * 10 9 7 12 12 C 1.50625 * 110.58835 * 308.90749 * 11 10 9 13 13 C 1.38909 * 117.75714 * 197.80506 * 12 11 10 14 14 C 1.37933 * 120.54862 * 180.67749 * 13 12 11 15 15 C 1.38268 * 119.77068 * 359.38687 * 14 13 12 16 16 C 1.37938 * 119.76886 * 0.18321 * 15 14 13 17 17 C 1.37664 * 122.56665 * 17.71234 * 12 11 10 18 18 C 1.50695 * 109.47103 * 119.99062 * 2 1 3 19 19 O 1.21285 * 119.99691 * 120.00332 * 18 2 1 20 20 N 1.34781 * 120.00473 * 300.00528 * 18 2 1 21 21 C 1.46499 * 119.99864 * 359.97438 * 20 18 2 22 22 C 1.46502 * 119.99973 * 180.02562 * 20 18 2 23 23 C 1.50701 * 109.47138 * 90.00014 * 22 20 18 24 24 H 1.07999 * 120.00044 * 359.97438 * 23 22 20 25 25 C 1.37883 * 119.99801 * 179.97438 * 23 22 20 26 26 N 1.31505 * 119.99897 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99722 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47228 * 59.99883 * 27 25 23 29 29 H 1.48499 * 109.46955 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47292 * 299.99419 * 27 25 23 31 31 H 1.08999 * 109.47113 * 299.99969 * 1 2 3 32 32 H 1.09002 * 109.47015 * 60.00520 * 1 2 3 33 33 H 1.09001 * 109.46573 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.68644 * 308.36153 * 9 7 5 35 35 H 1.09001 * 109.68437 * 68.91800 * 9 7 5 36 36 H 1.08997 * 109.68162 * 189.60533 * 10 9 7 37 37 H 1.09000 * 109.68318 * 310.12116 * 10 9 7 38 38 H 1.08998 * 109.24679 * 69.19655 * 11 10 9 39 39 H 1.08996 * 109.25344 * 188.65873 * 11 10 9 40 40 H 1.08003 * 119.72401 * 0.41459 * 13 12 11 41 41 H 1.08002 * 120.11894 * 179.67260 * 14 13 12 42 42 H 1.07997 * 120.11807 * 180.19642 * 15 14 13 43 43 H 1.07994 * 119.72723 * 180.10740 * 16 15 14 44 44 H 1.08991 * 109.47101 * 89.99821 * 21 20 18 45 45 H 1.08993 * 109.47297 * 210.00333 * 21 20 18 46 46 H 1.09007 * 109.46831 * 330.00178 * 21 20 18 47 47 H 1.09001 * 109.46562 * 210.00011 * 22 20 18 48 48 H 1.08996 * 109.47430 * 329.99689 * 22 20 18 49 49 H 0.97004 * 119.99962 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2172 0.0639 -2.2811 6 8 1.9974 1.2516 -2.2507 7 6 2.7183 -0.5775 -3.5493 8 1 3.6827 -1.0479 -3.3574 9 6 2.8863 0.4957 -4.6231 10 6 3.1848 -0.1980 -5.9575 11 6 1.9199 -0.9190 -6.4191 12 6 1.3728 -1.7871 -5.3165 13 6 0.4708 -2.7843 -5.6653 14 6 -0.0767 -3.6034 -4.7000 15 6 0.2842 -3.4397 -3.3754 16 6 1.1864 -2.4558 -3.0280 17 6 1.7346 -1.6262 -3.9980 18 6 2.0324 -0.7102 1.2305 19 8 2.7297 -1.6963 1.1194 20 7 1.7067 -0.2496 2.4547 21 6 0.8649 0.9417 2.5890 22 6 2.1956 -0.9398 3.6509 23 6 3.5229 -0.3556 4.0607 24 1 3.9589 0.4490 3.4873 25 6 4.1806 -0.8484 5.1679 26 7 3.6494 -1.8278 5.8664 27 14 5.8255 -0.1237 5.6763 28 1 5.6595 1.3221 5.9716 29 1 6.3211 -0.8234 6.8888 30 1 6.8041 -0.2943 4.5724 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3632 -1.0277 0.0005 34 1 1.9679 1.0765 -4.7086 35 1 3.7140 1.1537 -4.3582 36 1 3.4758 0.5447 -6.7003 37 1 3.9911 -0.9192 -5.8241 38 1 1.1689 -0.1814 -6.7021 39 1 2.1556 -1.5413 -7.2823 40 1 0.1926 -2.9165 -6.7005 41 1 -0.7814 -4.3731 -4.9784 42 1 -0.1386 -4.0800 -2.6154 43 1 1.4692 -2.3297 -1.9934 44 1 -0.1831 0.6442 2.6221 45 1 1.1227 1.4671 3.5085 46 1 1.0288 1.6004 1.7360 47 1 1.4776 -0.8146 4.4614 48 1 2.3171 -2.0010 3.4339 49 1 4.1119 -2.1742 6.6455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044432201.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:46 Heat of formation + Delta-G solvation = -115.966156 kcal Electronic energy + Delta-G solvation = -30886.102055 eV Core-core repulsion = 26777.245332 eV Total energy + Delta-G solvation = -4108.856722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.34575 -41.02364 -40.24807 -37.97455 -36.80052 -36.70666 -34.97007 -33.99872 -32.83968 -31.18216 -30.03010 -29.56624 -27.78145 -26.33798 -25.66560 -24.34307 -23.61833 -23.32114 -21.99235 -20.49878 -20.28551 -19.16692 -18.69825 -18.17584 -17.89594 -17.47722 -17.00130 -16.61900 -16.54707 -16.38859 -16.18885 -15.75387 -15.10816 -14.94395 -14.80308 -14.54925 -14.32122 -14.20936 -14.11342 -13.92783 -13.71850 -13.58323 -13.46919 -13.38355 -13.06638 -13.01576 -12.84527 -12.64684 -12.61447 -12.49861 -12.30608 -12.19954 -11.94471 -11.88050 -11.78257 -11.74968 -11.42969 -11.30214 -10.67032 -10.65401 -9.70780 -9.54868 -9.52431 -8.25931 -6.40709 0.32053 0.45322 0.98426 1.26047 1.34952 1.39099 1.46236 1.58738 2.28234 2.40900 2.81730 3.04051 3.33574 3.37590 3.51394 3.64474 3.76908 3.79914 3.90075 4.00675 4.14710 4.25396 4.29127 4.30968 4.35067 4.48431 4.52515 4.56408 4.62249 4.65526 4.71841 4.83411 4.91558 4.92415 4.98618 5.00565 5.05431 5.11861 5.13948 5.17309 5.23967 5.29827 5.39809 5.48259 5.56899 5.65179 5.67413 5.75298 6.00898 6.10202 6.46436 6.59932 6.67616 7.17310 7.33129 8.81278 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.002628 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.545116 B =10652.683176 C =11029.611419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 H 0.113 0.887 4 O -0.335 6.335 5 C 0.468 3.532 6 O -0.520 6.520 7 C -0.035 4.035 8 H 0.122 0.878 9 C -0.101 4.101 10 C -0.114 4.114 11 C -0.081 4.081 12 C -0.069 4.069 13 C -0.127 4.127 14 C -0.114 4.114 15 C -0.138 4.138 16 C -0.136 4.136 17 C -0.098 4.098 18 C 0.501 3.499 19 O -0.578 6.578 20 N -0.599 5.599 21 C 0.068 3.932 22 C 0.261 3.739 23 C -0.549 4.549 24 H 0.052 0.948 25 C 0.011 3.989 26 N -0.926 5.926 27 Si 0.966 3.034 28 H -0.260 1.260 29 H -0.276 1.276 30 H -0.279 1.279 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.034 0.966 48 H 0.001 0.999 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 4.069 -26.436 28.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 H 0.131 0.869 4 O -0.251 6.251 5 C 0.312 3.688 6 O -0.409 6.409 7 C -0.054 4.054 8 H 0.140 0.860 9 C -0.139 4.139 10 C -0.151 4.151 11 C -0.118 4.118 12 C -0.069 4.069 13 C -0.144 4.144 14 C -0.132 4.132 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.098 4.098 18 C 0.288 3.712 19 O -0.457 6.457 20 N -0.331 5.331 21 C -0.074 4.074 22 C 0.140 3.860 23 C -0.587 4.587 24 H 0.070 0.930 25 C -0.189 4.189 26 N -0.565 5.565 27 Si 0.790 3.210 28 H -0.184 1.184 29 H -0.201 1.201 30 H -0.205 1.205 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.052 0.948 48 H 0.019 0.981 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.715 3.812 -26.259 27.929 hybrid contribution 0.944 -0.039 1.351 1.649 sum -7.771 3.773 -24.907 26.363 Atomic orbital electron populations 1.22381 0.89490 1.04388 1.05919 1.22536 0.97732 0.96759 0.81256 0.86919 1.86679 1.76835 1.41658 1.19929 1.24248 0.73379 0.85703 0.85484 1.90606 1.48784 1.17028 1.84487 1.20160 0.99780 0.96680 0.88791 0.86043 1.21523 1.03409 0.95516 0.93419 1.21583 0.97775 1.00180 0.95553 1.20610 0.97518 0.98071 0.95603 1.19905 0.96816 0.97076 0.93075 1.21481 0.96997 0.95132 1.00837 1.21454 0.99663 0.99650 0.92426 1.21287 0.98304 0.98329 0.97643 1.21818 0.97514 0.95906 1.00119 1.19159 0.99328 0.97294 0.94036 1.20615 0.80661 0.84837 0.85119 1.90667 1.39543 1.28673 1.86860 1.48036 1.50108 1.29530 1.05416 1.22238 0.94742 0.86312 1.04106 1.18841 0.93948 0.91782 0.81432 1.21661 1.06043 1.19370 1.11636 0.93022 1.25829 1.01743 0.95192 0.96133 1.70028 1.40704 1.27039 1.18726 0.85491 0.78810 0.79153 0.77515 1.18406 1.20099 1.20501 0.86888 0.89923 0.91452 0.91020 0.90317 0.88370 0.91040 0.89329 0.88272 0.83047 0.83588 0.85612 0.86050 0.89617 0.90599 0.89458 0.94835 0.98101 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 9.18 71.98 0.66 -3.51 16 2 C 0.08 2.53 2.18 29.85 0.06 2.59 16 3 H 0.11 3.60 6.42 -2.38 -0.02 3.59 16 4 O -0.34 -11.58 6.41 -45.06 -0.29 -11.87 16 5 C 0.47 14.09 7.01 71.23 0.50 14.59 16 6 O -0.52 -16.65 15.03 21.96 0.33 -16.32 16 7 C -0.04 -0.83 2.70 -12.40 -0.03 -0.87 16 8 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 9 C -0.10 -1.82 4.67 30.62 0.14 -1.67 16 10 C -0.11 -1.35 5.98 30.62 0.18 -1.16 16 11 C -0.08 -0.93 5.67 29.74 0.17 -0.76 16 12 C -0.07 -1.23 5.74 -19.86 -0.11 -1.35 16 13 C -0.13 -1.99 9.61 22.36 0.21 -1.77 16 14 C -0.11 -2.00 10.05 22.20 0.22 -1.78 16 15 C -0.14 -3.15 10.05 22.21 0.22 -2.92 16 16 C -0.14 -3.66 8.96 22.36 0.20 -3.46 16 17 C -0.10 -2.30 5.42 -19.86 -0.11 -2.40 16 18 C 0.50 22.14 7.15 87.65 0.63 22.77 16 19 O -0.58 -31.66 16.08 15.76 0.25 -31.41 16 20 N -0.60 -25.80 2.86 -851.14 -2.43 -28.23 16 21 C 0.07 2.00 8.80 127.77 1.12 3.13 16 22 C 0.26 14.13 5.16 85.63 0.44 14.57 16 23 C -0.55 -31.95 9.39 25.60 0.24 -31.71 16 24 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 25 C 0.01 0.61 5.46 84.66 0.46 1.07 16 26 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 27 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 28 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 29 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 30 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 31 H 0.11 2.35 4.53 -2.39 -0.01 2.34 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.40 7.76 -2.39 -0.02 1.38 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.85 8.10 -2.39 -0.02 0.83 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.74 8.12 -2.39 -0.02 0.72 16 40 H 0.15 1.41 8.05 -2.91 -0.02 1.39 16 41 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.12 3.93 5.18 -2.91 -0.02 3.92 16 44 H 0.09 1.99 6.95 -2.39 -0.02 1.97 16 45 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 46 H 0.09 2.10 6.01 -2.38 -0.01 2.09 16 47 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 48 H 0.00 0.05 7.42 -2.39 -0.02 0.04 16 49 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -78.71 393.46 6.35 -72.36 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.95 Total: 18.62 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 5.22 Total: 5.34 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -2.15 Total: -83.98 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: 0.29 Total: -59.60 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -78.71 6.35 -72.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044432201.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.604 kcal (2) G-P(sol) polarization free energy of solvation -78.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds