Wall clock time and date at job start Wed Apr 1 2020 03:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47485 * 2 1 4 4 O 1.45200 * 109.47268 * 119.99935 * 2 1 3 5 5 C 1.34706 * 116.99915 * 270.00002 * 4 2 1 6 6 O 1.21464 * 120.00135 * 0.02562 * 5 4 2 7 7 C 1.47771 * 119.99893 * 179.97438 * 5 4 2 8 8 C 1.39973 * 120.03032 * 359.72635 * 7 5 4 9 9 C 1.38314 * 120.35011 * 179.76018 * 8 7 5 10 10 C 1.37757 * 120.42192 * 0.51768 * 9 8 7 11 11 C 1.40755 * 120.04569 * 359.73818 * 10 9 8 12 12 C 1.41444 * 120.17172 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00097 * 334.92312 * 12 11 10 14 14 C 1.39939 * 119.99976 * 154.92751 * 12 11 10 15 15 N 1.30827 * 119.99577 * 342.58493 * 14 12 11 16 16 Si 1.86801 * 120.00077 * 162.58555 * 14 12 11 17 17 H 1.48499 * 109.47085 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46968 * 119.99654 * 16 14 12 19 19 H 1.48491 * 109.47148 * 239.99670 * 16 14 12 20 20 C 1.39043 * 120.03226 * 179.97438 * 7 5 4 21 21 C 1.50697 * 109.47370 * 239.99952 * 2 1 3 22 22 O 1.21281 * 120.00451 * 245.00281 * 21 2 1 23 23 N 1.34778 * 119.99792 * 64.99912 * 21 2 1 24 24 C 1.46502 * 119.99863 * 180.02562 * 23 21 2 25 25 C 1.53006 * 109.47065 * 274.99308 * 24 23 21 26 26 C 1.52994 * 109.47010 * 179.97438 * 25 24 23 27 27 C 1.52999 * 109.47197 * 60.00553 * 26 25 24 28 28 C 1.52996 * 109.46988 * 299.99862 * 27 26 25 29 29 C 1.52996 * 109.47406 * 60.00054 * 28 27 26 30 30 H 1.09003 * 109.46810 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46778 * 299.99846 * 1 2 3 32 32 H 1.08998 * 109.47003 * 60.00089 * 1 2 3 33 33 H 1.08004 * 119.81934 * 0.02562 * 8 7 5 34 34 H 1.08004 * 119.78616 * 180.25629 * 9 8 7 35 35 H 1.07998 * 119.97347 * 179.76247 * 10 9 8 36 36 H 0.97007 * 119.99725 * 180.02562 * 15 14 12 37 37 H 1.08010 * 120.20484 * 359.95502 * 20 7 5 38 38 H 0.97001 * 120.00085 * 359.97438 * 23 21 2 39 39 H 1.08993 * 109.47392 * 34.99770 * 24 23 21 40 40 H 1.08998 * 109.47225 * 300.00917 * 25 24 23 41 41 H 1.09007 * 109.46209 * 60.00111 * 25 24 23 42 42 H 1.09001 * 109.47286 * 300.00211 * 26 25 24 43 43 H 1.09007 * 109.46543 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.47280 * 179.97438 * 27 26 25 45 45 H 1.09006 * 109.46994 * 59.99274 * 27 26 25 46 46 H 1.08993 * 109.47066 * 299.99692 * 28 27 26 47 47 H 1.09000 * 109.47305 * 179.97438 * 28 27 26 48 48 H 1.08999 * 109.47542 * 180.02562 * 29 28 27 49 49 H 1.08993 * 109.47304 * 59.99783 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2179 0.0667 2.2850 6 8 1.9969 1.2607 2.2543 7 6 2.7093 -0.5620 3.5287 8 6 2.9576 -1.9390 3.5667 9 6 3.4224 -2.5336 4.7259 10 6 3.6361 -1.7800 5.8591 11 6 3.3869 -0.3948 5.8416 12 6 3.6060 0.3816 7.0035 13 1 3.5656 -0.0818 7.9782 14 6 3.8750 1.7502 6.8900 15 7 4.2594 2.2483 5.7430 16 14 3.6853 2.8657 8.3763 17 1 3.2427 2.0628 9.5446 18 1 4.9887 3.5078 8.6829 19 1 2.6743 3.9131 8.0833 20 6 2.9204 0.2128 4.6638 21 6 2.0324 -0.7104 -1.2304 22 8 2.6530 -1.7467 -1.1215 23 7 1.7919 -0.1941 -2.4520 24 6 2.2798 -0.8850 -3.6482 25 6 3.7279 -0.4727 -3.9203 26 6 4.2377 -1.1947 -5.1691 27 6 3.3659 -0.8167 -6.3683 28 6 1.9179 -1.2289 -6.0962 29 6 1.4080 -0.5069 -4.8474 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.7895 -2.5396 2.6850 34 1 3.6149 -3.5962 4.7438 35 1 3.9955 -2.2524 6.7614 36 1 4.4462 3.1970 5.6644 37 1 2.7271 1.2752 4.6402 38 1 1.2952 0.6345 -2.5391 39 1 2.2324 -1.9624 -3.4903 40 1 3.7754 0.6048 -4.0781 41 1 4.3490 -0.7424 -3.0661 42 1 4.1903 -2.2721 -5.0107 43 1 5.2695 -0.9012 -5.3627 44 1 3.7293 -1.3307 -7.2582 45 1 3.4132 0.2608 -6.5266 46 1 1.8705 -2.3062 -5.9379 47 1 1.2967 -0.9592 -6.9503 48 1 0.3766 -0.8010 -4.6533 49 1 1.4554 0.5704 -5.0057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051537502.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:27 Heat of formation + Delta-G solvation = -131.163059 kcal Electronic energy + Delta-G solvation = -29689.495516 eV Core-core repulsion = 25579.979807 eV Total energy + Delta-G solvation = -4109.515710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.54077 -39.63473 -38.21595 -37.32493 -35.78195 -34.43740 -33.75350 -32.08946 -31.12508 -30.22708 -29.50533 -29.26625 -25.48017 -24.98266 -23.41011 -22.99651 -22.15626 -20.98919 -20.59328 -20.06622 -19.73313 -18.00138 -17.49619 -16.73475 -16.28108 -15.88306 -15.58860 -15.37685 -14.92756 -14.85450 -14.65471 -14.42732 -14.20646 -14.02018 -13.56108 -13.19669 -13.13450 -13.00824 -12.83727 -12.64395 -12.55886 -12.49204 -12.28168 -11.68684 -11.62212 -11.53742 -11.51295 -11.20626 -11.10586 -11.02311 -10.81637 -10.76134 -10.57582 -10.51407 -10.51254 -10.23143 -9.74509 -9.67778 -9.48797 -9.25054 -9.23996 -7.74642 -7.54467 -6.82558 -4.43446 1.94694 2.50883 2.53291 2.77419 3.06585 3.11169 3.13168 3.45821 3.57013 3.90297 4.29175 4.37606 4.46623 4.57461 4.62573 4.78651 4.84314 4.88403 4.99614 5.07775 5.13383 5.14017 5.24369 5.25743 5.40834 5.54176 5.60621 5.64691 5.70201 5.71100 5.74208 5.75710 5.88005 5.98553 6.01023 6.06904 6.14897 6.29441 6.45548 6.60786 6.87331 6.94141 6.97453 7.16979 7.27586 7.31555 7.69243 7.76092 7.91013 8.08561 8.10640 8.44281 8.49325 8.77029 8.79278 10.13030 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.002078 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.980678 B =13470.090769 C =13805.981567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.067 3.933 3 H 0.108 0.892 4 O -0.326 6.326 5 C 0.513 3.487 6 O -0.518 6.518 7 C -0.115 4.115 8 C -0.188 4.188 9 C -0.105 4.105 10 C -0.198 4.198 11 C 0.094 3.906 12 C -0.460 4.460 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.789 5.789 16 Si 0.910 3.090 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.271 1.271 20 C -0.088 4.088 21 C 0.520 3.480 22 O -0.511 6.511 23 N -0.728 5.728 24 C 0.147 3.853 25 C -0.132 4.132 26 C -0.117 4.117 27 C -0.122 4.122 28 C -0.116 4.116 29 C -0.126 4.126 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.284 0.716 37 H 0.136 0.864 38 H 0.400 0.600 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 -1.619 -21.157 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.007 3.993 3 H 0.125 0.875 4 O -0.243 6.243 5 C 0.361 3.639 6 O -0.407 6.407 7 C -0.116 4.116 8 C -0.208 4.208 9 C -0.123 4.123 10 C -0.218 4.218 11 C 0.092 3.908 12 C -0.489 4.489 13 H 0.101 0.899 14 C -0.146 4.146 15 N -0.413 5.413 16 Si 0.735 3.265 17 H -0.183 1.183 18 H -0.199 1.199 19 H -0.196 1.196 20 C -0.107 4.107 21 C 0.305 3.695 22 O -0.384 6.384 23 N -0.381 5.381 24 C 0.043 3.957 25 C -0.171 4.171 26 C -0.155 4.155 27 C -0.159 4.159 28 C -0.154 4.154 29 C -0.164 4.164 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.153 0.847 38 H 0.234 0.766 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.364 -1.814 -21.195 21.938 hybrid contribution -0.209 1.189 0.459 1.292 sum -5.573 -0.625 -20.736 21.481 Atomic orbital electron populations 1.22128 0.92221 1.03830 1.03799 1.22283 0.95755 0.97753 0.83474 0.87481 1.86770 1.77536 1.40960 1.18990 1.22021 0.73369 0.85010 0.83525 1.90744 1.49605 1.16236 1.84163 1.18789 1.08216 0.94509 0.90131 1.20647 1.08821 0.93093 0.98245 1.20530 1.00408 0.97880 0.93485 1.21207 1.08093 0.94979 0.97532 1.17545 0.89303 0.91342 0.92648 1.19584 1.42672 0.92674 0.94005 0.89912 1.25964 0.92221 0.99028 0.97375 1.69793 1.30544 1.15233 1.25761 0.86222 0.78788 0.79858 0.81670 1.18310 1.19929 1.19598 1.21642 0.97923 1.00159 0.90986 1.20279 0.79648 0.85424 0.84140 1.90744 1.38618 1.22830 1.86257 1.45962 1.58792 1.28118 1.05262 1.20989 0.93257 0.98181 0.83275 1.21952 0.96055 1.00552 0.98538 1.21495 0.99150 1.00734 0.94145 1.21580 0.94994 1.01348 0.98009 1.21476 0.96356 1.00576 0.96950 1.21811 0.99244 1.01138 0.94213 0.90952 0.90376 0.90673 0.87576 0.88439 0.88286 0.90529 0.84676 0.76600 0.89288 0.91734 0.91158 0.91650 0.91656 0.91860 0.91912 0.91590 0.91521 0.91211 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.50 37.16 0.35 -1.57 16 2 C 0.07 1.01 2.98 -27.89 -0.08 0.93 16 3 H 0.11 1.60 7.16 -51.93 -0.37 1.22 16 4 O -0.33 -6.55 8.66 -47.17 -0.41 -6.96 16 5 C 0.51 11.70 7.87 34.63 0.27 11.97 16 6 O -0.52 -12.32 15.59 -19.24 -0.30 -12.62 16 7 C -0.12 -2.84 5.87 -105.05 -0.62 -3.46 16 8 C -0.19 -4.34 9.62 -38.90 -0.37 -4.72 16 9 C -0.10 -2.34 10.01 -39.73 -0.40 -2.73 16 10 C -0.20 -4.75 9.78 -38.81 -0.38 -5.13 16 11 C 0.09 2.49 5.57 -106.87 -0.59 1.89 16 12 C -0.46 -12.00 9.05 -37.73 -0.34 -12.35 16 13 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 14 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 15 N -0.79 -20.70 10.97 55.55 0.61 -20.09 16 16 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 17 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 C -0.09 -2.34 8.23 -38.43 -0.32 -2.65 16 21 C 0.52 7.53 7.15 -10.99 -0.08 7.45 16 22 O -0.51 -9.55 16.17 -14.05 -0.23 -9.77 16 23 N -0.73 -7.21 5.04 -53.80 -0.27 -7.48 16 24 C 0.15 1.34 2.45 -67.92 -0.17 1.17 16 25 C -0.13 -1.23 5.49 -26.73 -0.15 -1.38 16 26 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 27 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 28 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 29 C -0.13 -0.79 5.39 -26.73 -0.14 -0.93 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.61 7.92 -51.93 -0.41 0.20 16 33 H 0.11 2.30 7.59 -52.48 -0.40 1.90 16 34 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 35 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 37 H 0.14 3.82 5.76 -52.48 -0.30 3.52 16 38 H 0.40 2.78 8.38 -40.82 -0.34 2.44 16 39 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 403.64 15.07 6.08 6.08 Total: -1.00 -31.41 403.64 -10.81 -42.22 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.69 Total: 7.58 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.58 Total: -12.53 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.34 Total: -27.57 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.94 Total: -29.35 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.41 -10.81 -42.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051537502.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.944 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds