Wall clock time and date at job start Wed Apr 1 2020 03:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47485 * 2 1 4 4 O 1.45200 * 109.47268 * 119.99935 * 2 1 3 5 5 C 1.34706 * 116.99915 * 270.00002 * 4 2 1 6 6 O 1.21464 * 120.00135 * 0.02562 * 5 4 2 7 7 C 1.47771 * 119.99893 * 179.97438 * 5 4 2 8 8 C 1.39973 * 120.03032 * 359.72635 * 7 5 4 9 9 C 1.38314 * 120.35011 * 179.76018 * 8 7 5 10 10 C 1.37757 * 120.42192 * 0.51768 * 9 8 7 11 11 C 1.40755 * 120.04569 * 359.73818 * 10 9 8 12 12 C 1.41444 * 120.17172 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00097 * 334.92312 * 12 11 10 14 14 C 1.39939 * 119.99976 * 154.92751 * 12 11 10 15 15 N 1.30827 * 119.99577 * 342.58493 * 14 12 11 16 16 Si 1.86801 * 120.00077 * 162.58555 * 14 12 11 17 17 H 1.48499 * 109.47085 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46968 * 119.99654 * 16 14 12 19 19 H 1.48491 * 109.47148 * 239.99670 * 16 14 12 20 20 C 1.39043 * 120.03226 * 179.97438 * 7 5 4 21 21 C 1.50697 * 109.47370 * 239.99952 * 2 1 3 22 22 O 1.21281 * 120.00451 * 245.00281 * 21 2 1 23 23 N 1.34778 * 119.99792 * 64.99912 * 21 2 1 24 24 C 1.46502 * 119.99863 * 180.02562 * 23 21 2 25 25 C 1.53006 * 109.47065 * 274.99308 * 24 23 21 26 26 C 1.52994 * 109.47010 * 179.97438 * 25 24 23 27 27 C 1.52999 * 109.47197 * 60.00553 * 26 25 24 28 28 C 1.52996 * 109.46988 * 299.99862 * 27 26 25 29 29 C 1.52996 * 109.47406 * 60.00054 * 28 27 26 30 30 H 1.09003 * 109.46810 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46778 * 299.99846 * 1 2 3 32 32 H 1.08998 * 109.47003 * 60.00089 * 1 2 3 33 33 H 1.08004 * 119.81934 * 0.02562 * 8 7 5 34 34 H 1.08004 * 119.78616 * 180.25629 * 9 8 7 35 35 H 1.07998 * 119.97347 * 179.76247 * 10 9 8 36 36 H 0.97007 * 119.99725 * 180.02562 * 15 14 12 37 37 H 1.08010 * 120.20484 * 359.95502 * 20 7 5 38 38 H 0.97001 * 120.00085 * 359.97438 * 23 21 2 39 39 H 1.08993 * 109.47392 * 34.99770 * 24 23 21 40 40 H 1.08998 * 109.47225 * 300.00917 * 25 24 23 41 41 H 1.09007 * 109.46209 * 60.00111 * 25 24 23 42 42 H 1.09001 * 109.47286 * 300.00211 * 26 25 24 43 43 H 1.09007 * 109.46543 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.47280 * 179.97438 * 27 26 25 45 45 H 1.09006 * 109.46994 * 59.99274 * 27 26 25 46 46 H 1.08993 * 109.47066 * 299.99692 * 28 27 26 47 47 H 1.09000 * 109.47305 * 179.97438 * 28 27 26 48 48 H 1.08999 * 109.47542 * 180.02562 * 29 28 27 49 49 H 1.08993 * 109.47304 * 59.99783 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2179 0.0667 2.2850 6 8 1.9969 1.2607 2.2543 7 6 2.7093 -0.5620 3.5287 8 6 2.9576 -1.9390 3.5667 9 6 3.4224 -2.5336 4.7259 10 6 3.6361 -1.7800 5.8591 11 6 3.3869 -0.3948 5.8416 12 6 3.6060 0.3816 7.0035 13 1 3.5656 -0.0818 7.9782 14 6 3.8750 1.7502 6.8900 15 7 4.2594 2.2483 5.7430 16 14 3.6853 2.8657 8.3763 17 1 3.2427 2.0628 9.5446 18 1 4.9887 3.5078 8.6829 19 1 2.6743 3.9131 8.0833 20 6 2.9204 0.2128 4.6638 21 6 2.0324 -0.7104 -1.2304 22 8 2.6530 -1.7467 -1.1215 23 7 1.7919 -0.1941 -2.4520 24 6 2.2798 -0.8850 -3.6482 25 6 3.7279 -0.4727 -3.9203 26 6 4.2377 -1.1947 -5.1691 27 6 3.3659 -0.8167 -6.3683 28 6 1.9179 -1.2289 -6.0962 29 6 1.4080 -0.5069 -4.8474 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.7895 -2.5396 2.6850 34 1 3.6149 -3.5962 4.7438 35 1 3.9955 -2.2524 6.7614 36 1 4.4462 3.1970 5.6644 37 1 2.7271 1.2752 4.6402 38 1 1.2952 0.6345 -2.5391 39 1 2.2324 -1.9624 -3.4903 40 1 3.7754 0.6048 -4.0781 41 1 4.3490 -0.7424 -3.0661 42 1 4.1903 -2.2721 -5.0107 43 1 5.2695 -0.9012 -5.3627 44 1 3.7293 -1.3307 -7.2582 45 1 3.4132 0.2608 -6.5266 46 1 1.8705 -2.3062 -5.9379 47 1 1.2967 -0.9592 -6.9503 48 1 0.3766 -0.8010 -4.6533 49 1 1.4554 0.5704 -5.0057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051537502.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:26 Heat of formation + Delta-G solvation = -147.159746 kcal Electronic energy + Delta-G solvation = -29690.189185 eV Core-core repulsion = 25579.979807 eV Total energy + Delta-G solvation = -4110.209378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.92153 -40.95095 -39.35267 -38.91888 -37.43096 -35.64609 -35.41546 -33.30190 -32.02113 -31.71173 -31.38784 -30.07308 -27.34753 -26.27608 -24.86443 -23.61868 -23.13420 -22.86034 -21.68296 -21.45929 -20.72949 -19.76957 -18.71263 -18.33987 -17.52326 -17.37439 -17.08330 -16.66332 -16.50844 -16.25315 -15.78415 -15.36320 -15.25594 -15.07140 -14.92954 -14.81143 -14.44325 -14.28806 -14.07198 -13.81685 -13.57384 -13.46354 -13.40052 -13.14401 -13.05713 -12.84040 -12.75029 -12.60177 -12.27067 -12.22870 -12.08704 -12.07869 -11.98294 -11.60861 -11.56524 -11.40488 -11.37909 -11.23705 -11.11365 -10.83113 -10.17059 -9.65483 -9.47556 -8.69807 -6.41378 0.07140 0.93406 1.21970 1.35758 1.38232 1.44181 1.54727 1.74624 2.19167 2.21659 2.69935 3.42826 3.59532 3.67773 3.70015 3.75781 3.84772 3.86385 4.00966 4.19900 4.28900 4.37256 4.42161 4.51885 4.52990 4.55086 4.57775 4.59876 4.67754 4.81670 4.87101 4.99190 5.02450 5.04150 5.08875 5.09938 5.16320 5.19008 5.21101 5.26201 5.30676 5.37077 5.41297 5.41813 5.53953 5.78005 5.86524 5.98262 6.19231 6.34561 6.50448 6.72601 6.84241 6.85907 7.04641 8.28272 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.002078 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.980678 B =13470.090769 C =13805.981567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.056 3.944 3 H 0.110 0.890 4 O -0.334 6.334 5 C 0.518 3.482 6 O -0.536 6.536 7 C -0.129 4.129 8 C -0.185 4.185 9 C -0.099 4.099 10 C -0.201 4.201 11 C 0.066 3.934 12 C -0.491 4.491 13 H 0.089 0.911 14 C 0.029 3.971 15 N -0.827 5.827 16 Si 0.986 3.014 17 H -0.251 1.251 18 H -0.265 1.265 19 H -0.268 1.268 20 C -0.118 4.118 21 C 0.524 3.476 22 O -0.561 6.561 23 N -0.703 5.703 24 C 0.145 3.855 25 C -0.131 4.131 26 C -0.116 4.116 27 C -0.118 4.118 28 C -0.115 4.115 29 C -0.118 4.118 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.118 0.882 36 H 0.289 0.711 37 H 0.110 0.890 38 H 0.418 0.582 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 -1.491 -22.710 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.003 4.003 3 H 0.128 0.872 4 O -0.250 6.250 5 C 0.366 3.634 6 O -0.427 6.427 7 C -0.130 4.130 8 C -0.204 4.204 9 C -0.117 4.117 10 C -0.221 4.221 11 C 0.063 3.937 12 C -0.520 4.520 13 H 0.107 0.893 14 C -0.186 4.186 15 N -0.452 5.452 16 Si 0.806 3.194 17 H -0.174 1.174 18 H -0.190 1.190 19 H -0.193 1.193 20 C -0.138 4.138 21 C 0.309 3.691 22 O -0.438 6.438 23 N -0.357 5.357 24 C 0.041 3.959 25 C -0.169 4.169 26 C -0.154 4.154 27 C -0.155 4.155 28 C -0.153 4.153 29 C -0.155 4.155 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.256 0.744 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.098 0.902 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.493 -1.679 -22.800 23.766 hybrid contribution 0.143 1.050 0.766 1.308 sum -6.350 -0.629 -22.034 22.939 Atomic orbital electron populations 1.22157 0.89317 1.04395 1.05401 1.22769 0.98089 0.97493 0.81907 0.87199 1.86704 1.77404 1.41265 1.19672 1.21703 0.73095 0.84681 0.83946 1.90715 1.50403 1.16909 1.84685 1.19049 1.07997 0.95359 0.90592 1.20917 1.07819 0.92504 0.99178 1.20938 0.98706 0.99766 0.92313 1.21502 1.07472 0.94214 0.98920 1.17926 0.89928 0.92836 0.92972 1.19883 1.44053 0.93857 0.94200 0.89321 1.26895 0.91130 1.00172 1.00379 1.69878 1.31475 1.15818 1.28045 0.85097 0.78946 0.77542 0.77792 1.17401 1.18998 1.19313 1.21461 1.00571 0.99319 0.92403 1.20192 0.79131 0.84766 0.85045 1.90726 1.41087 1.25047 1.86964 1.45822 1.57496 1.28302 1.04085 1.21123 0.93995 0.96917 0.83855 1.21924 0.95606 1.01392 0.98028 1.21494 0.99797 0.99937 0.94221 1.21566 0.94780 1.01972 0.97223 1.21501 0.96384 1.00198 0.97239 1.21791 0.98874 1.02252 0.92630 0.90877 0.91638 0.86160 0.86064 0.84402 0.86435 0.90071 0.87202 0.74433 0.91550 0.90608 0.94748 0.92606 0.91440 0.90898 0.91075 0.92203 0.89633 0.90219 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.50 71.98 0.68 -2.78 16 2 C 0.06 1.68 2.98 29.85 0.09 1.77 16 3 H 0.11 3.26 7.16 -2.39 -0.02 3.24 16 4 O -0.33 -13.66 8.66 -49.79 -0.43 -14.09 16 5 C 0.52 24.33 7.87 70.34 0.55 24.89 16 6 O -0.54 -26.41 15.59 19.95 0.31 -26.10 16 7 C -0.13 -6.53 5.87 -20.14 -0.12 -6.65 16 8 C -0.18 -8.48 9.62 22.71 0.22 -8.26 16 9 C -0.10 -4.30 10.01 22.17 0.22 -4.07 16 10 C -0.20 -9.61 9.78 22.77 0.22 -9.38 16 11 C 0.07 3.57 5.57 -21.32 -0.12 3.45 16 12 C -0.49 -26.25 9.05 23.47 0.21 -26.04 16 13 H 0.09 4.45 7.90 -2.91 -0.02 4.43 16 14 C 0.03 1.49 5.14 85.25 0.44 1.93 16 15 N -0.83 -45.07 10.97 21.82 0.24 -44.83 16 16 Si 0.99 38.58 29.59 68.60 2.03 40.61 16 17 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 18 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 19 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 20 C -0.12 -6.57 8.23 23.02 0.19 -6.38 16 21 C 0.52 15.05 7.15 87.66 0.63 15.68 16 22 O -0.56 -21.50 16.17 15.71 0.25 -21.24 16 23 N -0.70 -12.95 5.04 -442.52 -2.23 -15.18 16 24 C 0.14 2.49 2.45 45.00 0.11 2.60 16 25 C -0.13 -2.40 5.49 30.59 0.17 -2.23 16 26 C -0.12 -1.69 5.92 30.59 0.18 -1.51 16 27 C -0.12 -1.14 5.92 30.59 0.18 -0.96 16 28 C -0.12 -1.01 5.92 30.59 0.18 -0.83 16 29 C -0.12 -1.13 5.39 30.60 0.17 -0.96 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.12 1.55 7.92 -2.39 -0.02 1.53 16 33 H 0.12 5.16 7.59 -2.91 -0.02 5.14 16 34 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 35 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 36 H 0.29 14.35 8.30 -92.70 -0.77 13.58 16 37 H 0.11 6.61 5.76 -2.91 -0.02 6.59 16 38 H 0.42 4.66 8.38 -92.71 -0.78 3.88 16 39 H 0.07 1.49 7.58 -2.39 -0.02 1.47 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -72.35 403.64 4.56 -67.80 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.18 Total: 32.76 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 4.21 Total: -19.73 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -1.99 Total: -60.01 kcal Atomic # 8 Polarization: -61.57 SS G_CDS: 0.13 Total: -61.43 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -72.35 4.56 -67.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051537502.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.364 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds