Wall clock time and date at job start Wed Apr 1 2020 03:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47537 * 2 1 4 4 O 1.45202 * 109.46876 * 240.00234 * 2 1 3 5 5 C 1.34710 * 116.99815 * 89.99960 * 4 2 1 6 6 O 1.21458 * 120.00031 * 0.02562 * 5 4 2 7 7 C 1.47773 * 119.99765 * 179.97438 * 5 4 2 8 8 C 1.39971 * 120.03024 * 359.73049 * 7 5 4 9 9 C 1.38311 * 120.35082 * 179.75880 * 8 7 5 10 10 C 1.37764 * 120.42082 * 0.51402 * 9 8 7 11 11 C 1.40761 * 120.04744 * 359.74543 * 10 9 8 12 12 C 1.41441 * 120.17632 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99806 * 325.86478 * 12 11 10 14 14 C 1.39933 * 120.00212 * 145.85826 * 12 11 10 15 15 N 1.30825 * 119.99769 * 2.90725 * 14 12 11 16 16 Si 1.86793 * 120.00114 * 182.89949 * 14 12 11 17 17 H 1.48501 * 109.47007 * 60.00502 * 16 14 12 18 18 H 1.48503 * 109.47147 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47411 * 300.00576 * 16 14 12 20 20 C 1.39046 * 120.02785 * 179.97438 * 7 5 4 21 21 C 1.50696 * 109.47168 * 120.00656 * 2 1 3 22 22 O 1.21284 * 120.00249 * 99.53994 * 21 2 1 23 23 N 1.34771 * 119.99832 * 279.54193 * 21 2 1 24 24 C 1.44586 * 118.64639 * 4.14823 * 23 21 2 25 25 C 1.54309 * 109.90703 * 270.85603 * 24 23 21 26 26 C 1.47092 * 110.29412 * 288.75472 * 25 24 23 27 27 C 1.52567 * 114.32700 * 62.73253 * 26 25 24 28 28 C 1.50876 * 109.35791 * 274.97810 * 27 26 25 29 29 C 1.47609 * 118.64508 * 184.41441 * 23 21 2 30 30 H 1.09009 * 109.46721 * 54.59607 * 1 2 3 31 31 H 1.09002 * 109.46924 * 294.60249 * 1 2 3 32 32 H 1.08992 * 109.47537 * 174.59503 * 1 2 3 33 33 H 1.08001 * 119.82374 * 0.02562 * 8 7 5 34 34 H 1.08002 * 119.79281 * 180.25561 * 9 8 7 35 35 H 1.08000 * 119.97744 * 179.76382 * 10 9 8 36 36 H 0.97003 * 119.99891 * 180.02562 * 15 14 12 37 37 H 1.07996 * 120.20835 * 359.96189 * 20 7 5 38 38 H 1.08995 * 109.44555 * 30.76166 * 24 23 21 39 39 H 1.08994 * 109.44904 * 150.68358 * 24 23 21 40 40 H 1.09003 * 109.40224 * 168.46440 * 25 24 23 41 41 H 1.09000 * 109.14445 * 48.88375 * 25 24 23 42 42 H 1.09000 * 108.51426 * 301.47989 * 26 25 24 43 43 H 1.09006 * 108.38965 * 183.89660 * 26 25 24 44 44 H 1.09000 * 109.48899 * 155.01454 * 27 26 25 45 45 H 1.08998 * 109.49099 * 34.94710 * 27 26 25 46 46 H 1.09000 * 109.36662 * 331.70031 * 28 27 26 47 47 H 1.08991 * 109.37299 * 212.07557 * 28 27 26 48 48 H 1.09003 * 108.94722 * 258.55397 * 29 23 21 49 49 H 1.08997 * 108.94657 * 17.27040 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2178 0.0668 -2.2851 6 8 1.9977 1.2609 -2.2540 7 6 2.7101 -0.5618 -3.5285 8 6 2.9703 -1.9366 -3.5630 9 6 3.4266 -2.5327 -4.7247 10 6 3.6404 -1.7790 -5.8579 11 6 3.3895 -0.3941 -5.8410 12 6 3.6075 0.3822 -7.0030 13 1 4.4145 0.1323 -7.6758 14 6 2.7775 1.4740 -7.2811 15 7 1.8360 1.8113 -6.4378 16 14 3.0142 2.4498 -8.8562 17 1 2.8316 1.5534 -10.0260 18 1 2.0159 3.5479 -8.9129 19 1 4.3833 3.0243 -8.8817 20 6 2.9202 0.2130 -4.6639 21 6 2.0323 -0.7105 1.2303 22 8 2.3986 -1.8644 1.1572 23 7 2.0745 -0.0637 2.4120 24 6 1.5467 1.2803 2.4857 25 6 2.6565 2.2996 2.1537 26 6 3.6359 2.3624 3.2493 27 6 4.3832 1.0561 3.4999 28 6 3.5618 0.1767 4.4101 29 6 2.6632 -0.7545 3.5761 30 1 -0.3633 0.5954 -0.8377 31 1 -0.3633 0.4279 0.9344 32 1 -0.3634 -1.0230 -0.0968 33 1 2.8098 -2.5360 -2.6790 34 1 3.6205 -3.5950 -4.7424 35 1 4.0004 -2.2512 -6.7600 36 1 1.2604 2.5679 -6.6307 37 1 2.7241 1.2747 -4.6411 38 1 0.7330 1.3904 1.7689 39 1 1.1716 1.4682 3.4917 40 1 2.2123 3.2846 2.0100 41 1 3.1601 1.9938 1.2367 42 1 3.1143 2.6437 4.1642 43 1 4.3647 3.1385 3.0151 44 1 5.3428 1.2705 3.9704 45 1 4.5489 0.5442 2.5520 46 1 2.9392 0.8012 5.0508 47 1 4.2274 -0.4235 5.0302 48 1 1.8589 -1.1300 4.2087 49 1 3.2587 -1.5967 3.2240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051538002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:34 Heat of formation + Delta-G solvation = -121.754960 kcal Electronic energy + Delta-G solvation = -30766.039644 eV Core-core repulsion = 26656.931900 eV Total energy + Delta-G solvation = -4109.107744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.13297 -41.12460 -39.28702 -38.70892 -37.46170 -35.58058 -35.18831 -34.04569 -32.75066 -31.87159 -31.36699 -28.15060 -27.33205 -26.42947 -26.15244 -24.73870 -22.89535 -22.52405 -21.46146 -21.44155 -20.22864 -19.75998 -18.52653 -18.32886 -17.67791 -17.30218 -17.21398 -16.66545 -16.56906 -16.42137 -15.74938 -15.45944 -15.38175 -15.17342 -14.93257 -14.70291 -14.38988 -14.33416 -14.11905 -13.95075 -13.73270 -13.57106 -13.36624 -13.12507 -12.96218 -12.90740 -12.79550 -12.59255 -12.45238 -12.24317 -12.07801 -12.05073 -11.85437 -11.63539 -11.59529 -11.55832 -11.40851 -11.34157 -11.10878 -10.83412 -9.78066 -9.65320 -9.36056 -8.54674 -6.45593 0.05840 0.95502 1.05855 1.39725 1.42935 1.46399 1.52340 1.73326 2.09936 2.22691 2.76619 3.17110 3.55204 3.62114 3.70792 3.73619 3.81818 3.86226 3.96679 3.97395 4.13415 4.29155 4.35712 4.42247 4.48749 4.55735 4.57186 4.64685 4.66149 4.75979 4.80914 4.87627 4.95514 5.01441 5.03367 5.07632 5.14136 5.17471 5.20563 5.23397 5.31560 5.33375 5.42143 5.43237 5.55025 5.78268 5.83741 6.03211 6.12508 6.20126 6.52151 6.71163 6.86858 6.89478 6.91776 8.38609 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.002620 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.724786 B =10686.216961 C =11401.400987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.057 3.943 3 H 0.109 0.891 4 O -0.337 6.337 5 C 0.517 3.483 6 O -0.532 6.532 7 C -0.137 4.137 8 C -0.171 4.171 9 C -0.107 4.107 10 C -0.187 4.187 11 C 0.060 3.940 12 C -0.496 4.496 13 H 0.086 0.914 14 C 0.024 3.976 15 N -0.843 5.843 16 Si 0.992 3.008 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.259 1.259 20 C -0.105 4.105 21 C 0.517 3.483 22 O -0.560 6.560 23 N -0.589 5.589 24 C 0.091 3.909 25 C -0.144 4.144 26 C -0.116 4.116 27 C -0.122 4.122 28 C -0.120 4.120 29 C 0.108 3.892 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.120 0.880 36 H 0.285 0.715 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.032 0.968 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.030 0.970 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 1.976 21.497 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.002 4.002 3 H 0.127 0.873 4 O -0.253 6.253 5 C 0.364 3.636 6 O -0.423 6.423 7 C -0.138 4.138 8 C -0.191 4.191 9 C -0.125 4.125 10 C -0.207 4.207 11 C 0.058 3.942 12 C -0.526 4.526 13 H 0.104 0.896 14 C -0.188 4.188 15 N -0.470 5.470 16 Si 0.812 3.188 17 H -0.181 1.181 18 H -0.198 1.198 19 H -0.183 1.183 20 C -0.124 4.124 21 C 0.303 3.697 22 O -0.438 6.438 23 N -0.322 5.322 24 C -0.031 4.031 25 C -0.183 4.183 26 C -0.153 4.153 27 C -0.160 4.160 28 C -0.158 4.158 29 C -0.013 4.013 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.158 0.842 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.114 0.886 41 H 0.050 0.950 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.943 1.898 21.592 21.762 hybrid contribution 0.070 0.574 -0.967 1.127 sum -1.873 2.472 20.625 20.857 Atomic orbital electron populations 1.22237 0.89941 1.04322 1.05382 1.22827 0.97926 0.97493 0.81915 0.87300 1.86702 1.77424 1.41446 1.19745 1.21730 0.73287 0.84757 0.83812 1.90715 1.50235 1.16874 1.84511 1.19121 1.08451 0.95572 0.90652 1.21000 1.06118 0.92722 0.99213 1.20961 0.99393 0.99900 0.92228 1.21654 1.07155 0.93201 0.98661 1.17965 0.91426 0.92477 0.92343 1.19780 1.14799 1.11261 1.06764 0.89623 1.26855 0.93266 0.97000 1.01708 1.69826 1.15833 1.24907 1.36455 0.85100 0.79107 0.77512 0.77051 1.18109 1.19761 1.18319 1.21737 1.00415 0.99870 0.90423 1.20295 0.77995 0.86466 0.84900 1.90688 1.48838 1.18498 1.85792 1.47675 1.59776 1.16314 1.08458 1.22039 0.96080 0.79292 1.05685 1.21287 0.97783 1.00644 0.98549 1.20447 0.98149 0.97209 0.99520 1.21113 0.99492 0.96365 0.99026 1.21757 0.98270 0.98363 0.97390 1.22042 0.97850 0.95416 0.85964 0.91198 0.86400 0.91007 0.85997 0.84220 0.86183 0.90445 0.86316 0.89293 0.86165 0.88584 0.94957 0.89474 0.92508 0.90837 0.95122 0.88893 0.89226 0.89605 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.18 71.98 0.66 -3.43 16 2 C 0.06 1.81 2.14 29.85 0.06 1.88 16 3 H 0.11 3.43 4.91 -2.39 -0.01 3.42 16 4 O -0.34 -14.09 8.74 -50.06 -0.44 -14.53 16 5 C 0.52 24.45 7.87 70.34 0.55 25.01 16 6 O -0.53 -26.39 15.59 19.97 0.31 -26.08 16 7 C -0.14 -6.93 5.87 -20.14 -0.12 -7.05 16 8 C -0.17 -7.81 9.62 22.71 0.22 -7.59 16 9 C -0.11 -4.57 10.01 22.17 0.22 -4.35 16 10 C -0.19 -8.84 9.78 22.77 0.22 -8.61 16 11 C 0.06 3.25 5.55 -21.32 -0.12 3.13 16 12 C -0.50 -26.59 9.05 23.47 0.21 -26.38 16 13 H 0.09 4.30 7.85 -2.91 -0.02 4.28 16 14 C 0.02 1.23 5.41 85.25 0.46 1.69 16 15 N -0.84 -46.14 10.61 21.82 0.23 -45.91 16 16 Si 0.99 39.02 29.56 68.60 2.03 41.05 16 17 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 18 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 20 C -0.10 -5.83 8.21 23.02 0.19 -5.64 16 21 C 0.52 15.70 6.89 87.66 0.60 16.31 16 22 O -0.56 -21.63 15.93 14.85 0.24 -21.39 16 23 N -0.59 -12.18 2.25 -819.29 -1.84 -14.02 16 24 C 0.09 1.29 4.97 87.18 0.43 1.72 16 25 C -0.14 -2.32 5.38 29.20 0.16 -2.16 16 26 C -0.12 -1.54 5.15 28.61 0.15 -1.39 16 27 C -0.12 -1.89 5.51 29.76 0.16 -1.73 16 28 C -0.12 -1.36 5.71 30.22 0.17 -1.19 16 29 C 0.11 1.84 6.08 86.49 0.53 2.37 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.12 1.96 6.09 -2.39 -0.01 1.94 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.12 5.16 7.59 -2.91 -0.02 5.14 16 34 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 35 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 36 H 0.28 14.38 8.30 -92.71 -0.77 13.61 16 37 H 0.12 7.20 5.72 -2.91 -0.02 7.18 16 38 H 0.09 1.21 4.48 -2.39 -0.01 1.20 16 39 H 0.12 0.90 8.06 -2.39 -0.02 0.88 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.03 0.75 7.02 -2.39 -0.02 0.74 16 42 H 0.09 0.73 7.36 -2.39 -0.02 0.71 16 43 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.03 0.69 7.48 -2.39 -0.02 0.67 16 46 H 0.09 0.63 7.32 -2.39 -0.02 0.62 16 47 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.06 1.45 7.01 -2.39 -0.02 1.43 16 Total: -1.00 -71.99 388.65 6.26 -65.72 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.96 Total: 32.57 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 4.77 Total: -17.42 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -1.61 Total: -59.93 kcal Atomic # 8 Polarization: -62.11 SS G_CDS: 0.11 Total: -62.00 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -71.99 6.26 -65.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051538002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.030 kcal (2) G-P(sol) polarization free energy of solvation -71.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds