Wall clock time and date at job start Wed Apr 1 2020 03:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20759 * 119.99851 * 2 1 4 4 C 1.50699 * 119.99817 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46869 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.46869 * 180.02562 * 5 4 2 7 7 C 1.38271 * 119.94645 * 89.99974 * 6 5 4 8 8 C 1.38142 * 120.05536 * 179.97438 * 7 6 5 9 9 C 1.38727 * 119.94809 * 0.02562 * 8 7 6 10 10 O 1.35900 * 120.06077 * 180.02562 * 9 8 7 11 11 C 1.42894 * 117.00524 * 185.76490 * 10 9 8 12 12 H 1.09004 * 109.47020 * 35.12489 * 11 10 9 13 13 C 1.52994 * 109.47664 * 275.11924 * 11 10 9 14 14 C 1.50698 * 109.47194 * 155.11444 * 11 10 9 15 15 O 1.21297 * 120.00114 * 10.55216 * 14 11 10 16 16 N 1.34782 * 120.00266 * 190.54341 * 14 11 10 17 17 C 1.37097 * 120.00191 * 174.59822 * 16 14 11 18 18 H 1.08011 * 119.99593 * 328.74124 * 17 16 14 19 19 C 1.38948 * 120.00077 * 148.73883 * 17 16 14 20 20 N 1.31413 * 119.99744 * 0.49750 * 19 17 16 21 21 Si 1.86801 * 119.99917 * 180.49505 * 19 17 16 22 22 H 1.48500 * 109.46883 * 180.02562 * 21 19 17 23 23 H 1.48496 * 109.47106 * 300.00293 * 21 19 17 24 24 H 1.48505 * 109.47101 * 60.00290 * 21 19 17 25 25 C 1.46500 * 119.99723 * 354.60267 * 16 14 11 26 26 C 1.52996 * 117.49721 * 133.65013 * 25 16 14 27 27 C 1.52998 * 117.49943 * 64.98873 * 25 16 14 28 28 C 1.38735 * 119.88895 * 0.27164 * 9 8 7 29 29 C 1.38148 * 119.94253 * 359.43110 * 28 9 8 30 30 H 1.09002 * 109.46822 * 239.99969 * 1 2 3 31 31 H 1.08998 * 109.47065 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.46807 * 120.00371 * 1 2 3 33 33 H 1.09000 * 109.47219 * 59.99933 * 4 2 1 34 34 H 1.09002 * 109.47220 * 300.00177 * 4 2 1 35 35 H 1.09002 * 109.47109 * 60.00400 * 5 4 2 36 36 H 1.08992 * 109.47289 * 299.99994 * 5 4 2 37 37 H 1.07995 * 119.96999 * 359.97438 * 7 6 5 38 38 H 1.07999 * 120.02193 * 179.97438 * 8 7 6 39 39 H 1.09010 * 109.46692 * 64.79105 * 13 11 10 40 40 H 1.08994 * 109.47926 * 184.78954 * 13 11 10 41 41 H 1.08999 * 109.47261 * 304.79845 * 13 11 10 42 42 H 0.97005 * 119.99571 * 175.01014 * 20 19 17 43 43 H 1.08999 * 115.54748 * 279.31874 * 25 16 14 44 44 H 1.08997 * 117.50359 * 359.97438 * 26 25 16 45 45 H 1.09007 * 117.49591 * 145.01857 * 26 25 16 46 46 H 1.09003 * 117.49581 * 214.97802 * 27 25 16 47 47 H 1.08991 * 117.50261 * 359.97438 * 27 25 16 48 48 H 1.08001 * 120.03367 * 179.71847 * 28 9 8 49 49 H 1.07998 * 119.97440 * 180.27336 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.5182 -2.3306 0.0011 7 6 4.8637 -2.9282 -1.1971 8 6 5.5548 -4.1242 -1.1998 9 6 5.9018 -4.7263 0.0009 10 8 6.5822 -5.9027 0.0010 11 6 6.7954 -6.5289 1.2676 12 1 5.9320 -6.3536 1.9095 13 6 8.0463 -5.9405 1.9234 14 6 6.9817 -8.0112 1.0701 15 8 7.1280 -8.4606 -0.0470 16 7 6.9860 -8.8376 2.1348 17 6 7.0440 -10.1947 1.9490 18 1 6.5987 -10.6391 1.0710 19 6 7.6758 -10.9984 2.8901 20 7 8.2091 -10.4587 3.9630 21 14 7.7670 -12.8460 2.6300 22 1 8.4862 -13.4712 3.7688 23 1 6.3928 -13.4027 2.5473 24 1 8.4940 -13.1328 1.3672 25 6 6.9284 -8.2858 3.4907 26 6 5.9445 -8.9251 4.4724 27 6 5.6571 -7.5368 3.8952 28 6 5.5487 -4.1279 1.2018 29 6 4.8629 -2.9287 1.1992 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8899 33 1 1.9972 -1.8771 -0.8891 34 1 1.9971 -1.8763 0.8908 35 1 4.0277 -0.4538 0.8911 36 1 4.0284 -0.4542 -0.8888 37 1 4.5929 -2.4593 -2.1315 38 1 5.8240 -4.5907 -2.1359 39 1 7.8791 -4.8861 2.1438 40 1 8.2575 -6.4761 2.8488 41 1 8.8933 -6.0399 1.2446 42 1 8.5859 -11.0251 4.6546 43 1 7.8751 -7.9233 3.8912 44 1 5.3396 -9.7560 4.1095 45 1 6.2437 -8.9829 5.5190 46 1 5.7674 -6.6818 4.5622 47 1 4.8637 -7.4543 3.1525 48 1 5.8137 -4.5968 2.1379 49 1 4.5916 -2.4602 2.1337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068790424.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:52 Heat of formation + Delta-G solvation = -53.045015 kcal Electronic energy + Delta-G solvation = -29991.421190 eV Core-core repulsion = 25885.292933 eV Total energy + Delta-G solvation = -4106.128257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.35084 -39.78369 -38.88231 -37.44701 -36.04105 -33.75921 -33.07334 -31.87353 -31.08614 -30.93135 -30.38939 -28.53843 -25.46645 -24.62815 -23.63990 -22.74324 -21.67970 -21.38202 -20.83637 -19.84063 -19.10554 -17.97758 -16.91583 -16.38515 -16.36724 -15.86351 -15.41773 -15.32514 -15.18059 -15.07076 -14.89928 -14.40500 -14.30700 -13.89478 -13.67287 -13.47483 -13.29362 -13.07344 -12.90392 -12.75902 -12.58789 -12.45356 -12.25773 -11.88087 -11.81640 -11.52435 -11.39015 -11.25354 -11.14408 -11.08766 -10.82088 -10.68007 -10.58109 -10.44252 -10.39164 -9.95697 -9.80473 -9.45712 -8.95206 -8.87225 -8.41045 -7.88732 -7.74247 -6.32487 -4.01114 1.39135 1.47347 1.63441 3.15136 3.22316 3.23054 3.36444 3.66126 3.74230 3.87044 4.12249 4.59496 4.60032 4.67759 4.74118 4.79213 4.86396 4.91621 4.95983 5.02641 5.04443 5.18690 5.24378 5.34568 5.39297 5.43143 5.43835 5.51909 5.61307 5.64168 5.70717 5.80366 5.84761 5.88826 5.97048 6.03976 6.10908 6.13981 6.18594 6.35213 6.46047 6.50590 6.62748 6.71584 6.84813 6.86696 7.08819 7.17811 7.50210 7.67486 8.09006 8.43153 9.11043 9.29759 9.86833 10.69894 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.002156 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.987929 B =12984.745397 C =13424.120825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.353 3.647 3 O -0.460 6.460 4 C -0.169 4.169 5 C -0.063 4.063 6 C -0.136 4.136 7 C -0.077 4.077 8 C -0.154 4.154 9 C 0.141 3.859 10 O -0.285 6.285 11 C 0.072 3.928 12 H 0.091 0.909 13 C -0.174 4.174 14 C 0.464 3.536 15 O -0.561 6.561 16 N -0.417 5.417 17 C -0.308 4.308 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.871 5.871 21 Si 0.924 3.076 22 H -0.284 1.284 23 H -0.274 1.274 24 H -0.272 1.272 25 C 0.127 3.873 26 C -0.127 4.127 27 C -0.237 4.237 28 C -0.211 4.211 29 C -0.075 4.075 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.268 0.732 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.132 0.868 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.417 16.693 -0.717 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.229 3.771 3 O -0.334 6.334 4 C -0.206 4.206 5 C -0.100 4.100 6 C -0.137 4.137 7 C -0.095 4.095 8 C -0.172 4.172 9 C 0.094 3.906 10 O -0.197 6.197 11 C 0.012 3.988 12 H 0.109 0.891 13 C -0.231 4.231 14 C 0.250 3.750 15 O -0.443 6.443 16 N -0.138 5.138 17 C -0.435 4.435 18 H 0.111 0.889 19 C -0.164 4.164 20 N -0.508 5.508 21 Si 0.751 3.249 22 H -0.209 1.209 23 H -0.200 1.200 24 H -0.197 1.197 25 C 0.022 3.978 26 C -0.164 4.164 27 C -0.275 4.275 28 C -0.230 4.230 29 C -0.093 4.093 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.150 0.850 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.759 16.813 -1.291 20.002 hybrid contribution -0.027 -1.109 0.426 1.188 sum -10.786 15.704 -0.865 19.071 Atomic orbital electron populations 1.22343 0.94592 1.04843 1.04645 1.24724 0.91981 0.90416 0.70008 1.90418 1.72068 1.35253 1.35674 1.22183 0.96109 0.97139 1.05191 1.20261 0.92074 0.94010 1.03659 1.19632 1.03044 0.97777 0.93209 1.20770 0.96993 0.94216 0.97511 1.20452 1.03177 0.97007 0.96601 1.19222 0.91172 0.86128 0.94046 1.86240 1.69215 1.32275 1.31973 1.22408 0.99534 0.93256 0.83584 0.89145 1.22333 0.97637 1.00836 1.02334 1.19590 0.83710 0.85797 0.85855 1.90566 1.53148 1.76830 1.23777 1.42917 1.63421 1.05382 1.02061 1.19457 1.34514 0.80036 1.09532 0.88890 1.25356 0.94550 1.00391 0.96072 1.69863 1.37109 1.35752 1.08123 0.86031 0.78560 0.82266 0.78040 1.20928 1.19974 1.19730 1.21221 0.91867 0.99211 0.85508 1.22647 1.02077 0.93595 0.98127 1.23671 1.01949 0.97031 1.04873 1.21385 1.05524 0.98436 0.97639 1.20777 0.96703 0.94352 0.97433 0.88929 0.90177 0.88951 0.88160 0.88166 0.90791 0.90791 0.85777 0.85187 0.91984 0.89558 0.91284 0.92172 0.87449 0.89093 0.89600 0.89365 0.89861 0.85017 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.93 10.26 36.01 0.37 -0.57 16 2 C 0.35 2.63 7.27 -29.03 -0.21 2.42 16 3 O -0.46 -5.23 16.71 6.00 0.10 -5.13 16 4 C -0.17 -1.14 5.62 -27.88 -0.16 -1.29 16 5 C -0.06 -0.55 4.63 -27.88 -0.13 -0.68 16 6 C -0.14 -1.46 5.14 -104.60 -0.54 -2.00 16 7 C -0.08 -0.87 9.69 -39.60 -0.38 -1.26 16 8 C -0.15 -2.16 9.99 -39.44 -0.39 -2.55 16 9 C 0.14 2.27 6.60 -39.22 -0.26 2.01 16 10 O -0.29 -5.64 9.35 -39.11 -0.37 -6.00 16 11 C 0.07 1.38 1.87 -27.89 -0.05 1.33 16 12 H 0.09 1.57 3.73 -51.93 -0.19 1.37 16 13 C -0.17 -2.91 9.06 37.15 0.34 -2.57 16 14 C 0.46 11.43 6.95 -10.98 -0.08 11.36 16 15 O -0.56 -16.18 16.37 -14.14 -0.23 -16.41 16 16 N -0.42 -10.28 2.92 -107.73 -0.31 -10.60 16 17 C -0.31 -8.30 8.64 -14.93 -0.13 -8.43 16 18 H 0.09 2.64 7.61 -52.48 -0.40 2.24 16 19 C 0.04 1.05 5.07 -17.47 -0.09 0.96 16 20 N -0.87 -21.84 10.37 55.50 0.58 -21.27 16 21 Si 0.92 20.35 29.56 -169.99 -5.02 15.32 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.13 2.64 2.41 -67.93 -0.16 2.47 16 26 C -0.13 -2.45 8.47 -26.69 -0.23 -2.68 16 27 C -0.24 -3.97 8.59 -26.69 -0.23 -4.20 16 28 C -0.21 -2.89 8.29 -39.43 -0.33 -3.21 16 29 C -0.07 -0.85 9.69 -39.60 -0.38 -1.23 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 36 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.06 0.86 6.85 -51.92 -0.36 0.50 16 40 H 0.09 1.44 5.32 -51.93 -0.28 1.16 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.27 6.44 8.32 -40.82 -0.34 6.10 16 43 H 0.11 2.27 6.74 -51.93 -0.35 1.92 16 44 H 0.09 1.92 7.95 -51.93 -0.41 1.51 16 45 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.08 1.42 7.39 -51.93 -0.38 1.03 16 48 H 0.13 1.71 5.36 -52.49 -0.28 1.43 16 49 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 399.47 15.07 6.02 6.02 Total: -1.00 -32.41 399.47 -9.55 -41.96 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.27 Total: 6.23 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.04 Total: -10.12 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.26 Total: -31.87 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.50 Total: -27.54 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.41 -9.55 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068790424.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.084 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds