Wall clock time and date at job start Wed Apr 1 2020 03:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20759 * 119.99851 * 2 1 4 4 C 1.50699 * 119.99817 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46869 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.46869 * 180.02562 * 5 4 2 7 7 C 1.38271 * 119.94645 * 89.99974 * 6 5 4 8 8 C 1.38142 * 120.05536 * 179.97438 * 7 6 5 9 9 C 1.38727 * 119.94809 * 0.02562 * 8 7 6 10 10 O 1.35900 * 120.06077 * 180.02562 * 9 8 7 11 11 C 1.42894 * 117.00524 * 185.76490 * 10 9 8 12 12 H 1.09004 * 109.47020 * 35.12489 * 11 10 9 13 13 C 1.52994 * 109.47664 * 275.11924 * 11 10 9 14 14 C 1.50698 * 109.47194 * 155.11444 * 11 10 9 15 15 O 1.21297 * 120.00114 * 10.55216 * 14 11 10 16 16 N 1.34782 * 120.00266 * 190.54341 * 14 11 10 17 17 C 1.37097 * 120.00191 * 174.59822 * 16 14 11 18 18 H 1.08011 * 119.99593 * 328.74124 * 17 16 14 19 19 C 1.38948 * 120.00077 * 148.73883 * 17 16 14 20 20 N 1.31413 * 119.99744 * 0.49750 * 19 17 16 21 21 Si 1.86801 * 119.99917 * 180.49505 * 19 17 16 22 22 H 1.48500 * 109.46883 * 180.02562 * 21 19 17 23 23 H 1.48496 * 109.47106 * 300.00293 * 21 19 17 24 24 H 1.48505 * 109.47101 * 60.00290 * 21 19 17 25 25 C 1.46500 * 119.99723 * 354.60267 * 16 14 11 26 26 C 1.52996 * 117.49721 * 133.65013 * 25 16 14 27 27 C 1.52998 * 117.49943 * 64.98873 * 25 16 14 28 28 C 1.38735 * 119.88895 * 0.27164 * 9 8 7 29 29 C 1.38148 * 119.94253 * 359.43110 * 28 9 8 30 30 H 1.09002 * 109.46822 * 239.99969 * 1 2 3 31 31 H 1.08998 * 109.47065 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.46807 * 120.00371 * 1 2 3 33 33 H 1.09000 * 109.47219 * 59.99933 * 4 2 1 34 34 H 1.09002 * 109.47220 * 300.00177 * 4 2 1 35 35 H 1.09002 * 109.47109 * 60.00400 * 5 4 2 36 36 H 1.08992 * 109.47289 * 299.99994 * 5 4 2 37 37 H 1.07995 * 119.96999 * 359.97438 * 7 6 5 38 38 H 1.07999 * 120.02193 * 179.97438 * 8 7 6 39 39 H 1.09010 * 109.46692 * 64.79105 * 13 11 10 40 40 H 1.08994 * 109.47926 * 184.78954 * 13 11 10 41 41 H 1.08999 * 109.47261 * 304.79845 * 13 11 10 42 42 H 0.97005 * 119.99571 * 175.01014 * 20 19 17 43 43 H 1.08999 * 115.54748 * 279.31874 * 25 16 14 44 44 H 1.08997 * 117.50359 * 359.97438 * 26 25 16 45 45 H 1.09007 * 117.49591 * 145.01857 * 26 25 16 46 46 H 1.09003 * 117.49581 * 214.97802 * 27 25 16 47 47 H 1.08991 * 117.50261 * 359.97438 * 27 25 16 48 48 H 1.08001 * 120.03367 * 179.71847 * 28 9 8 49 49 H 1.07998 * 119.97440 * 180.27336 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.5182 -2.3306 0.0011 7 6 4.8637 -2.9282 -1.1971 8 6 5.5548 -4.1242 -1.1998 9 6 5.9018 -4.7263 0.0009 10 8 6.5822 -5.9027 0.0010 11 6 6.7954 -6.5289 1.2676 12 1 5.9320 -6.3536 1.9095 13 6 8.0463 -5.9405 1.9234 14 6 6.9817 -8.0112 1.0701 15 8 7.1280 -8.4606 -0.0470 16 7 6.9860 -8.8376 2.1348 17 6 7.0440 -10.1947 1.9490 18 1 6.5987 -10.6391 1.0710 19 6 7.6758 -10.9984 2.8901 20 7 8.2091 -10.4587 3.9630 21 14 7.7670 -12.8460 2.6300 22 1 8.4862 -13.4712 3.7688 23 1 6.3928 -13.4027 2.5473 24 1 8.4940 -13.1328 1.3672 25 6 6.9284 -8.2858 3.4907 26 6 5.9445 -8.9251 4.4724 27 6 5.6571 -7.5368 3.8952 28 6 5.5487 -4.1279 1.2018 29 6 4.8629 -2.9287 1.1992 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8899 33 1 1.9972 -1.8771 -0.8891 34 1 1.9971 -1.8763 0.8908 35 1 4.0277 -0.4538 0.8911 36 1 4.0284 -0.4542 -0.8888 37 1 4.5929 -2.4593 -2.1315 38 1 5.8240 -4.5907 -2.1359 39 1 7.8791 -4.8861 2.1438 40 1 8.2575 -6.4761 2.8488 41 1 8.8933 -6.0399 1.2446 42 1 8.5859 -11.0251 4.6546 43 1 7.8751 -7.9233 3.8912 44 1 5.3396 -9.7560 4.1095 45 1 6.2437 -8.9829 5.5190 46 1 5.7674 -6.6818 4.5622 47 1 4.8637 -7.4543 3.1525 48 1 5.8137 -4.5968 2.1379 49 1 4.5916 -2.4602 2.1337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068790424.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:50 Heat of formation + Delta-G solvation = -70.013822 kcal Electronic energy + Delta-G solvation = -29992.157012 eV Core-core repulsion = 25885.292933 eV Total energy + Delta-G solvation = -4106.864080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.63165 -40.63310 -40.22977 -38.68336 -37.80404 -34.98193 -34.52422 -33.43795 -32.57377 -31.69512 -31.42739 -29.31194 -27.32409 -25.75343 -24.79187 -23.86588 -23.06856 -23.00243 -21.91802 -20.73613 -20.39304 -19.27705 -18.71473 -17.80661 -17.17700 -17.00567 -16.80898 -16.49863 -16.45325 -16.05319 -15.91104 -15.80144 -15.64576 -15.20071 -14.97273 -14.82910 -14.48234 -14.23057 -13.91857 -13.73919 -13.63642 -13.43532 -13.12384 -13.02721 -12.94807 -12.90200 -12.87729 -12.70093 -12.44514 -12.26882 -12.20930 -12.14126 -12.00130 -11.80465 -11.65163 -11.45886 -11.08557 -10.64509 -10.56842 -10.26481 -9.90891 -9.66907 -8.97553 -8.27274 -6.04474 0.42690 0.47059 1.09580 1.36295 1.40537 1.47702 1.87819 1.95577 2.34904 2.79400 2.98485 3.06304 3.19095 3.24422 3.66354 3.86149 3.92374 3.99084 4.04800 4.06705 4.15240 4.20969 4.24572 4.35970 4.38382 4.44455 4.50313 4.55729 4.64461 4.69439 4.73898 4.74833 4.81281 4.82389 4.89118 5.00162 5.09684 5.17066 5.20371 5.25260 5.27896 5.38279 5.38909 5.42971 5.47261 5.49568 5.71812 5.89420 6.08557 6.42496 6.59071 6.65282 7.15168 7.38533 7.96131 8.71436 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.002156 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.987929 B =12984.745397 C =13424.120825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.357 3.643 3 O -0.507 6.507 4 C -0.167 4.167 5 C -0.061 4.061 6 C -0.123 4.123 7 C -0.073 4.073 8 C -0.169 4.169 9 C 0.103 3.897 10 O -0.321 6.321 11 C 0.089 3.911 12 H 0.112 0.888 13 C -0.165 4.165 14 C 0.443 3.557 15 O -0.623 6.623 16 N -0.422 5.422 17 C -0.346 4.346 18 H 0.061 0.939 19 C 0.015 3.985 20 N -0.872 5.872 21 Si 0.979 3.021 22 H -0.267 1.267 23 H -0.268 1.268 24 H -0.285 1.285 25 C 0.100 3.900 26 C -0.133 4.133 27 C -0.193 4.193 28 C -0.213 4.213 29 C -0.072 4.072 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.149 0.851 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.274 0.726 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.134 0.866 47 H 0.082 0.918 48 H 0.140 0.860 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.185 18.672 1.384 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.236 3.764 3 O -0.384 6.384 4 C -0.204 4.204 5 C -0.098 4.098 6 C -0.123 4.123 7 C -0.091 4.091 8 C -0.188 4.188 9 C 0.058 3.942 10 O -0.235 6.235 11 C 0.030 3.970 12 H 0.129 0.871 13 C -0.223 4.223 14 C 0.232 3.768 15 O -0.509 6.509 16 N -0.141 5.141 17 C -0.473 4.473 18 H 0.079 0.921 19 C -0.190 4.190 20 N -0.508 5.508 21 Si 0.803 3.197 22 H -0.191 1.191 23 H -0.193 1.193 24 H -0.211 1.211 25 C -0.004 4.004 26 C -0.170 4.170 27 C -0.231 4.231 28 C -0.231 4.231 29 C -0.089 4.089 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.167 0.833 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.152 0.848 47 H 0.100 0.900 48 H 0.158 0.842 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.548 18.808 0.866 22.626 hybrid contribution 0.478 -1.656 -0.261 1.743 sum -12.071 17.152 0.605 20.982 Atomic orbital electron populations 1.22360 0.92240 1.05038 1.06452 1.25156 0.93314 0.89822 0.68058 1.90419 1.73112 1.36720 1.38192 1.22208 0.94353 0.97142 1.06694 1.20251 0.93387 0.92615 1.03541 1.19901 1.01682 0.97945 0.92768 1.21036 0.95860 0.93053 0.99122 1.20616 1.04062 0.98152 0.95970 1.19549 0.93093 0.85741 0.95840 1.86177 1.70780 1.34323 1.32199 1.22148 1.01334 0.89411 0.84140 0.87076 1.22291 0.95737 1.02746 1.01479 1.20653 0.82770 0.88351 0.85045 1.90502 1.55904 1.78513 1.26029 1.43116 1.62403 1.04821 1.03801 1.19351 1.36612 0.81903 1.09464 0.92105 1.25932 0.93762 1.03701 0.95573 1.69920 1.36036 1.36872 1.07960 0.85228 0.78723 0.78050 0.77724 1.19103 1.19305 1.21064 1.21283 0.93439 1.01831 0.83867 1.22605 1.01455 0.94602 0.98366 1.23729 0.98542 0.96961 1.03853 1.21497 1.05638 0.99124 0.96842 1.21107 0.95533 0.93377 0.98920 0.86966 0.90878 0.87045 0.86697 0.86509 0.90882 0.91125 0.83310 0.86025 0.88507 0.89377 0.93183 0.91608 0.87780 0.91616 0.88122 0.84822 0.89970 0.84223 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 10.26 71.24 0.73 -0.50 16 2 C 0.36 4.43 7.27 29.10 0.21 4.64 16 3 O -0.51 -10.82 16.71 -1.45 -0.02 -10.85 16 4 C -0.17 -1.66 5.62 29.85 0.17 -1.49 16 5 C -0.06 -0.89 4.63 29.85 0.14 -0.75 16 6 C -0.12 -2.26 5.14 -19.85 -0.10 -2.36 16 7 C -0.07 -1.51 9.69 22.25 0.22 -1.30 16 8 C -0.17 -4.74 9.99 22.36 0.22 -4.52 16 9 C 0.10 3.28 6.60 22.51 0.15 3.43 16 10 O -0.32 -13.15 9.35 -73.60 -0.69 -13.84 16 11 C 0.09 3.46 1.87 29.85 0.06 3.51 16 12 H 0.11 3.72 3.73 -2.39 -0.01 3.72 16 13 C -0.17 -5.43 9.06 71.98 0.65 -4.78 16 14 C 0.44 22.91 6.95 87.66 0.61 23.52 16 15 O -0.62 -38.53 16.37 15.74 0.26 -38.27 16 16 N -0.42 -21.55 2.92 -613.13 -1.79 -23.34 16 17 C -0.35 -19.53 8.64 84.04 0.73 -18.80 16 18 H 0.06 3.73 7.61 -2.91 -0.02 3.71 16 19 C 0.02 0.78 5.07 84.93 0.43 1.21 16 20 N -0.87 -43.58 10.37 21.66 0.22 -43.36 16 21 Si 0.98 42.29 29.56 68.60 2.03 44.32 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 C 0.10 4.09 2.41 44.99 0.11 4.20 16 26 C -0.13 -4.96 8.47 30.62 0.26 -4.70 16 27 C -0.19 -5.93 8.59 30.62 0.26 -5.67 16 28 C -0.21 -5.32 8.29 22.37 0.19 -5.14 16 29 C -0.07 -1.38 9.69 22.26 0.22 -1.17 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 1.12 8.04 -2.39 -0.02 1.10 16 36 H 0.07 1.11 8.04 -2.39 -0.02 1.09 16 37 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.10 2.47 6.85 -2.38 -0.02 2.45 16 40 H 0.09 2.84 5.32 -2.39 -0.01 2.83 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.27 12.89 8.32 -92.70 -0.77 12.12 16 43 H 0.10 4.31 6.74 -2.39 -0.02 4.30 16 44 H 0.07 2.79 7.95 -2.39 -0.02 2.77 16 45 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 46 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 47 H 0.08 2.60 7.39 -2.39 -0.02 2.58 16 48 H 0.14 3.17 5.36 -2.91 -0.02 3.16 16 49 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -76.52 399.47 6.20 -70.31 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.96 Total: 25.70 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 5.24 Total: -10.67 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -1.57 Total: -66.70 kcal Atomic # 8 Polarization: -62.51 SS G_CDS: -0.46 Total: -62.96 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -76.52 6.20 -70.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068790424.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.301 kcal (2) G-P(sol) polarization free energy of solvation -76.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds