Wall clock time and date at job start Wed Apr 1 2020 03:34:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08997 * 109.46962 * 2 1
4 4 C 1.50698 * 109.47294 * 119.99881 * 2 1 3
5 5 H 1.07997 * 120.00108 * 119.99407 * 4 2 1
6 6 C 1.37885 * 119.99855 * 300.00385 * 4 2 1
7 7 N 1.31507 * 119.99772 * 179.97438 * 6 4 2
8 8 Si 1.86799 * 119.99838 * 359.97438 * 6 4 2
9 9 H 1.48500 * 109.46846 * 90.00502 * 8 6 4
10 10 H 1.48502 * 109.47067 * 210.00020 * 8 6 4
11 11 H 1.48495 * 109.47579 * 330.00505 * 8 6 4
12 12 O 1.45197 * 109.46959 * 240.00041 * 2 1 3
13 13 C 1.34224 * 117.00176 * 90.00053 * 12 2 1
14 14 O 1.20822 * 120.00204 * 0.02562 * 13 12 2
15 15 C 1.50706 * 120.00231 * 179.97438 * 13 12 2
16 16 H 1.09001 * 109.49272 * 60.06436 * 15 13 12
17 17 C 1.53033 * 109.49916 * 180.16321 * 15 13 12
18 18 C 1.53038 * 109.53904 * 181.31713 * 17 15 13
19 19 C 1.53624 * 109.24425 * 298.51175 * 18 17 15
20 20 N 1.46926 * 108.53963 * 54.85507 * 19 18 17
21 21 C 1.34780 * 120.62968 * 126.37139 * 20 19 18
22 22 O 1.21281 * 119.99810 * 179.71627 * 21 20 19
23 23 C 1.50701 * 119.99985 * 359.72211 * 21 20 19
24 24 C 1.50702 * 109.46833 * 180.02562 * 23 21 20
25 25 C 1.38234 * 120.00257 * 89.99861 * 24 23 21
26 26 C 1.38238 * 119.99675 * 180.25732 * 25 24 23
27 27 C 1.38228 * 120.00110 * 359.52133 * 26 25 24
28 28 C 1.38234 * 120.00090 * 0.43562 * 27 26 25
29 29 C 1.38235 * 119.99522 * 269.96874 * 24 23 21
30 30 C 1.46931 * 118.73764 * 306.09267 * 20 19 18
31 31 H 1.09002 * 109.47044 * 300.00273 * 1 2 3
32 32 H 1.09004 * 109.47466 * 60.00115 * 1 2 3
33 33 H 1.08998 * 109.47462 * 179.97438 * 1 2 3
34 34 H 0.97001 * 120.00306 * 179.97438 * 7 6 4
35 35 H 1.09002 * 109.46208 * 301.33766 * 17 15 13
36 36 H 1.08995 * 109.46505 * 61.29846 * 17 15 13
37 37 H 1.09008 * 109.49886 * 58.58915 * 18 17 15
38 38 H 1.09000 * 109.50465 * 178.64847 * 18 17 15
39 39 H 1.08998 * 109.73924 * 295.12000 * 19 18 17
40 40 H 1.09002 * 109.66802 * 174.54440 * 19 18 17
41 41 H 1.08993 * 109.47727 * 59.99585 * 23 21 20
42 42 H 1.08998 * 109.46529 * 299.99416 * 23 21 20
43 43 H 1.08002 * 119.99744 * 359.97115 * 25 24 23
44 44 H 1.08004 * 119.99577 * 179.72816 * 26 25 24
45 45 H 1.07998 * 119.99898 * 180.21654 * 27 26 25
46 46 H 1.08001 * 120.00324 * 179.78918 * 28 27 26
47 47 H 1.07996 * 120.00471 * 0.02562 * 29 24 23
48 48 H 1.09004 * 109.58350 * 173.64966 * 30 20 19
49 49 H 1.09002 * 109.58645 * 293.93288 * 30 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 1.2304
5 1 2.6532 -1.5885 1.1314
6 6 1.6992 -0.2393 2.4828
7 7 2.1372 -0.8595 3.5565
8 14 0.6257 1.2798 2.6541
9 1 -0.8021 0.8744 2.6993
10 1 0.9770 1.9954 3.9070
11 1 0.8488 2.1773 1.4922
12 8 2.0139 -0.6845 -1.1855
13 6 2.2170 0.0640 -2.2811
14 8 1.9982 1.2518 -2.2504
15 6 2.7192 -0.5771 -3.5492
16 1 2.0101 -1.3366 -3.8783
17 6 2.8678 0.4895 -4.6365
18 6 3.3464 -0.1657 -5.9341
19 6 4.7207 -0.8106 -5.6988
20 7 4.6150 -1.7335 -4.5605
21 6 5.0056 -3.0180 -4.6794
22 8 4.9181 -3.7686 -3.7308
23 6 5.5512 -3.5214 -5.9908
24 6 5.9109 -4.9789 -5.8589
25 6 4.9701 -5.9514 -6.1416
26 6 5.2986 -7.2882 -6.0154
27 6 6.5708 -7.6527 -5.6160
28 6 7.5119 -6.6802 -5.3341
29 6 7.1820 -5.3432 -5.4556
30 6 4.0812 -1.2280 -3.2884
31 1 -0.3633 0.5139 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 -0.3634 -1.0276 -0.0005
34 1 1.9031 -0.5279 4.4375
35 1 1.9050 0.9713 -4.8067
36 1 3.5954 1.2353 -4.3167
37 1 2.6315 -0.9290 -6.2415
38 1 3.4290 0.5905 -6.7147
39 1 5.4565 -0.0380 -5.4757
40 1 5.0247 -1.3615 -6.5889
41 1 6.4402 -2.9501 -6.2579
42 1 4.7961 -3.4028 -6.7679
43 1 3.9771 -5.6667 -6.4567
44 1 4.5622 -8.0480 -6.2321
45 1 6.8284 -8.6971 -5.5208
46 1 8.5048 -6.9648 -5.0187
47 1 7.9170 -4.5835 -5.2347
48 1 3.9630 -2.0544 -2.5876
49 1 4.7672 -0.4906 -2.8715
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000113692190.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:34:41
Heat of formation + Delta-G solvation = -97.972626 kcal
Electronic energy + Delta-G solvation = -30132.356938 eV
Core-core repulsion = 26024.280473 eV
Total energy + Delta-G solvation = -4108.076464 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-40.72026 -39.85932 -39.00575 -37.36161 -35.92898 -33.53930 -33.18513 -32.74326
-31.61355 -31.04785 -30.48219 -28.09520 -25.51451 -25.26328 -24.51353 -22.75638
-22.41302 -21.82941 -20.79456 -19.56898 -19.13892 -17.59386 -17.14304 -16.95364
-16.55759 -16.18775 -15.97673 -15.71828 -15.39368 -15.12611 -14.74345 -14.67214
-14.29687 -14.10598 -13.59924 -13.53811 -13.28563 -13.20636 -13.11092 -12.97778
-12.63197 -12.51423 -12.31765 -12.23018 -12.01559 -11.57549 -11.51921 -11.35180
-11.18569 -11.14864 -11.12590 -10.89788 -10.75516 -10.23171 -10.07907 -9.91026
-9.78327 -9.57871 -9.12161 -9.05506 -8.88165 -8.81375 -8.68387 -6.21375
-4.23864 1.15576 1.26782 2.48733 2.63400 2.89392 3.18354 3.30410
3.32075 3.42899 3.63856 4.26692 4.34172 4.40445 4.55203 4.58323
4.65518 4.69142 4.83305 4.83820 4.93556 5.00054 5.07739 5.09193
5.10301 5.16495 5.30308 5.33938 5.45974 5.47015 5.55545 5.64097
5.69166 5.80590 5.84597 5.86987 6.05303 6.12999 6.14892 6.24543
6.27933 6.30884 6.35491 6.39946 6.40154 6.58278 6.83472 7.01610
7.22955 7.34539 7.51040 8.06968 8.21236 8.57344 8.86884 9.35235
10.90791
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.012891 B = 0.002541 C = 0.002228
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2171.598532 B =11015.702072 C =12563.622069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.191 3.809
3 H 0.046 0.954
4 C -0.525 4.525
5 H 0.088 0.912
6 C 0.079 3.921
7 N -0.887 5.887
8 Si 0.879 3.121
9 H -0.273 1.273
10 H -0.290 1.290
11 H -0.263 1.263
12 O -0.337 6.337
13 C 0.459 3.541
14 O -0.519 6.519
15 C -0.095 4.095
16 H 0.107 0.893
17 C -0.105 4.105
18 C -0.133 4.133
19 C 0.103 3.897
20 N -0.614 5.614
21 C 0.514 3.486
22 O -0.520 6.520
23 C -0.100 4.100
24 C -0.067 4.067
25 C -0.105 4.105
26 C -0.119 4.119
27 C -0.121 4.121
28 C -0.119 4.119
29 C -0.105 4.105
30 C 0.122 3.878
31 H 0.056 0.944
32 H 0.036 0.964
33 H 0.064 0.936
34 H 0.269 0.731
35 H 0.076 0.924
36 H 0.075 0.925
37 H 0.070 0.930
38 H 0.081 0.919
39 H 0.074 0.926
40 H 0.087 0.913
41 H 0.102 0.898
42 H 0.102 0.898
43 H 0.119 0.881
44 H 0.121 0.879
45 H 0.120 0.880
46 H 0.121 0.879
47 H 0.119 0.881
48 H 0.111 0.889
49 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.862 -5.261 -26.416 28.059
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C 0.137 3.863
3 H 0.063 0.937
4 C -0.563 4.563
5 H 0.106 0.894
6 C -0.124 4.124
7 N -0.524 5.524
8 Si 0.708 3.292
9 H -0.200 1.200
10 H -0.217 1.217
11 H -0.188 1.188
12 O -0.253 6.253
13 C 0.301 3.699
14 O -0.409 6.409
15 C -0.115 4.115
16 H 0.125 0.875
17 C -0.142 4.142
18 C -0.172 4.172
19 C -0.020 4.020
20 N -0.349 5.349
21 C 0.302 3.698
22 O -0.394 6.394
23 C -0.140 4.140
24 C -0.068 4.068
25 C -0.123 4.123
26 C -0.137 4.137
27 C -0.139 4.139
28 C -0.138 4.138
29 C -0.123 4.123
30 C 0.000 4.000
31 H 0.075 0.925
32 H 0.055 0.945
33 H 0.083 0.917
34 H 0.079 0.921
35 H 0.095 0.905
36 H 0.094 0.906
37 H 0.088 0.912
38 H 0.100 0.900
39 H 0.092 0.908
40 H 0.105 0.895
41 H 0.120 0.880
42 H 0.121 0.879
43 H 0.137 0.863
44 H 0.139 0.861
45 H 0.138 0.862
46 H 0.139 0.861
47 H 0.137 0.863
48 H 0.130 0.870
49 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 7.751 -5.346 -25.613 27.288
hybrid contribution -0.816 1.005 0.380 1.349
sum 6.935 -4.341 -25.233 26.526
Atomic orbital electron populations
1.22524 0.98500 1.01892 0.99781 1.20935 0.90463 0.94385 0.80521
0.93664 1.20797 1.33395 1.14866 0.87216 0.89389 1.24736 0.95665
0.96712 0.95259 1.69839 1.44701 1.39889 0.97987 0.86974 0.80790
0.83671 0.77738 1.20009 1.21676 1.18763 1.86539 1.75348 1.42718
1.20647 1.23203 0.74871 0.85856 0.85967 1.90595 1.48941 1.16782
1.84559 1.21361 0.99035 0.99383 0.91694 0.87497 1.21416 1.03263
0.96737 0.92831 1.22015 0.96664 1.00574 0.97901 1.21930 0.97907
0.93324 0.88862 1.48127 1.63965 1.09943 1.12849 1.20546 0.77944
0.81177 0.90181 1.90789 1.53470 1.54908 1.40240 1.20707 1.02960
0.94009 0.96297 1.19282 0.94194 0.93527 0.99779 1.20976 0.98604
0.92839 0.99852 1.21105 0.96642 0.96005 0.99986 1.21146 0.93767
0.99380 0.99628 1.21106 0.99605 0.92937 1.00103 1.20977 0.96048
0.96363 0.98900 1.21502 0.92134 1.00516 0.85867 0.92515 0.94497
0.91740 0.92067 0.90504 0.90620 0.91155 0.90023 0.90817 0.89496
0.87961 0.87936 0.86266 0.86087 0.86204 0.86091 0.86265 0.87040
0.90674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.92 9.03 37.16 0.34 -3.58 16
2 C 0.19 4.86 2.15 -27.89 -0.06 4.80 16
3 H 0.05 1.21 6.21 -51.93 -0.32 0.89 16
4 C -0.53 -15.30 9.48 -34.44 -0.33 -15.62 16
5 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16
6 C 0.08 2.31 5.45 -17.82 -0.10 2.22 16
7 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16
8 Si 0.88 21.87 24.37 -169.99 -4.14 17.72 16
9 H -0.27 -6.52 6.87 56.52 0.39 -6.14 16
10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
11 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16
12 O -0.34 -7.75 9.79 -39.24 -0.38 -8.13 16
13 C 0.46 8.88 7.23 36.01 0.26 9.15 16
14 O -0.52 -11.10 15.20 -18.75 -0.28 -11.39 16
15 C -0.09 -1.32 2.78 -91.66 -0.25 -1.58 16
16 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16
17 C -0.10 -1.14 4.46 -26.69 -0.12 -1.26 16
18 C -0.13 -0.95 6.10 -26.39 -0.16 -1.11 16
19 C 0.10 0.71 6.37 -3.49 -0.02 0.68 16
20 N -0.61 -6.71 2.97 -172.50 -0.51 -7.22 16
21 C 0.51 6.28 7.69 -10.98 -0.08 6.19 16
22 O -0.52 -8.96 15.45 5.56 0.09 -8.88 16
23 C -0.10 -0.81 4.18 -29.03 -0.12 -0.93 16
24 C -0.07 -0.69 4.37 -104.62 -0.46 -1.14 16
25 C -0.10 -1.05 9.70 -39.58 -0.38 -1.44 16
26 C -0.12 -1.14 10.05 -39.59 -0.40 -1.53 16
27 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16
28 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16
29 C -0.10 -1.05 9.70 -39.58 -0.38 -1.44 16
30 C 0.12 1.72 5.64 -3.71 -0.02 1.69 16
31 H 0.06 1.33 3.27 -51.93 -0.17 1.16 16
32 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16
33 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16
34 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16
35 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16
36 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16
37 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16
38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
40 H 0.09 0.36 5.93 -51.93 -0.31 0.05 16
41 H 0.10 0.58 7.88 -51.93 -0.41 0.17 16
42 H 0.10 0.58 7.65 -51.93 -0.40 0.18 16
43 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16
44 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16
45 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16
46 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16
47 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16
48 H 0.11 1.91 7.01 -51.93 -0.36 1.54 16
49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
LS Contribution 394.49 15.07 5.94 5.94
Total: -1.00 -35.82 394.49 -9.10 -44.92
By element:
Atomic # 1 Polarization: 8.77 SS G_CDS: -7.49 Total: 1.28 kcal
Atomic # 6 Polarization: -4.85 SS G_CDS: -3.09 Total: -7.94 kcal
Atomic # 7 Polarization: -33.79 SS G_CDS: 0.26 Total: -33.53 kcal
Atomic # 8 Polarization: -27.82 SS G_CDS: -0.58 Total: -28.40 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.72 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -35.82 -9.10 -44.92 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000113692190.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.049 kcal
(2) G-P(sol) polarization free energy of solvation -35.825 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.874 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.973 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds