Wall clock time and date at job start Wed Apr 1 2020 03:34:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08997 * 109.46962 * 2 1
4 4 C 1.50698 * 109.47294 * 119.99881 * 2 1 3
5 5 H 1.07997 * 120.00108 * 119.99407 * 4 2 1
6 6 C 1.37885 * 119.99855 * 300.00385 * 4 2 1
7 7 N 1.31507 * 119.99772 * 179.97438 * 6 4 2
8 8 Si 1.86799 * 119.99838 * 359.97438 * 6 4 2
9 9 H 1.48500 * 109.46846 * 90.00502 * 8 6 4
10 10 H 1.48502 * 109.47067 * 210.00020 * 8 6 4
11 11 H 1.48495 * 109.47579 * 330.00505 * 8 6 4
12 12 O 1.45197 * 109.46959 * 240.00041 * 2 1 3
13 13 C 1.34224 * 117.00176 * 90.00053 * 12 2 1
14 14 O 1.20822 * 120.00204 * 0.02562 * 13 12 2
15 15 C 1.50706 * 120.00231 * 179.97438 * 13 12 2
16 16 H 1.09001 * 109.49272 * 60.06436 * 15 13 12
17 17 C 1.53033 * 109.49916 * 180.16321 * 15 13 12
18 18 C 1.53038 * 109.53904 * 181.31713 * 17 15 13
19 19 C 1.53624 * 109.24425 * 298.51175 * 18 17 15
20 20 N 1.46926 * 108.53963 * 54.85507 * 19 18 17
21 21 C 1.34780 * 120.62968 * 126.37139 * 20 19 18
22 22 O 1.21281 * 119.99810 * 179.71627 * 21 20 19
23 23 C 1.50701 * 119.99985 * 359.72211 * 21 20 19
24 24 C 1.50702 * 109.46833 * 180.02562 * 23 21 20
25 25 C 1.38234 * 120.00257 * 89.99861 * 24 23 21
26 26 C 1.38238 * 119.99675 * 180.25732 * 25 24 23
27 27 C 1.38228 * 120.00110 * 359.52133 * 26 25 24
28 28 C 1.38234 * 120.00090 * 0.43562 * 27 26 25
29 29 C 1.38235 * 119.99522 * 269.96874 * 24 23 21
30 30 C 1.46931 * 118.73764 * 306.09267 * 20 19 18
31 31 H 1.09002 * 109.47044 * 300.00273 * 1 2 3
32 32 H 1.09004 * 109.47466 * 60.00115 * 1 2 3
33 33 H 1.08998 * 109.47462 * 179.97438 * 1 2 3
34 34 H 0.97001 * 120.00306 * 179.97438 * 7 6 4
35 35 H 1.09002 * 109.46208 * 301.33766 * 17 15 13
36 36 H 1.08995 * 109.46505 * 61.29846 * 17 15 13
37 37 H 1.09008 * 109.49886 * 58.58915 * 18 17 15
38 38 H 1.09000 * 109.50465 * 178.64847 * 18 17 15
39 39 H 1.08998 * 109.73924 * 295.12000 * 19 18 17
40 40 H 1.09002 * 109.66802 * 174.54440 * 19 18 17
41 41 H 1.08993 * 109.47727 * 59.99585 * 23 21 20
42 42 H 1.08998 * 109.46529 * 299.99416 * 23 21 20
43 43 H 1.08002 * 119.99744 * 359.97115 * 25 24 23
44 44 H 1.08004 * 119.99577 * 179.72816 * 26 25 24
45 45 H 1.07998 * 119.99898 * 180.21654 * 27 26 25
46 46 H 1.08001 * 120.00324 * 179.78918 * 28 27 26
47 47 H 1.07996 * 120.00471 * 0.02562 * 29 24 23
48 48 H 1.09004 * 109.58350 * 173.64966 * 30 20 19
49 49 H 1.09002 * 109.58645 * 293.93288 * 30 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 1.2304
5 1 2.6532 -1.5885 1.1314
6 6 1.6992 -0.2393 2.4828
7 7 2.1372 -0.8595 3.5565
8 14 0.6257 1.2798 2.6541
9 1 -0.8021 0.8744 2.6993
10 1 0.9770 1.9954 3.9070
11 1 0.8488 2.1773 1.4922
12 8 2.0139 -0.6845 -1.1855
13 6 2.2170 0.0640 -2.2811
14 8 1.9982 1.2518 -2.2504
15 6 2.7192 -0.5771 -3.5492
16 1 2.0101 -1.3366 -3.8783
17 6 2.8678 0.4895 -4.6365
18 6 3.3464 -0.1657 -5.9341
19 6 4.7207 -0.8106 -5.6988
20 7 4.6150 -1.7335 -4.5605
21 6 5.0056 -3.0180 -4.6794
22 8 4.9181 -3.7686 -3.7308
23 6 5.5512 -3.5214 -5.9908
24 6 5.9109 -4.9789 -5.8589
25 6 4.9701 -5.9514 -6.1416
26 6 5.2986 -7.2882 -6.0154
27 6 6.5708 -7.6527 -5.6160
28 6 7.5119 -6.6802 -5.3341
29 6 7.1820 -5.3432 -5.4556
30 6 4.0812 -1.2280 -3.2884
31 1 -0.3633 0.5139 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 -0.3634 -1.0276 -0.0005
34 1 1.9031 -0.5279 4.4375
35 1 1.9050 0.9713 -4.8067
36 1 3.5954 1.2353 -4.3167
37 1 2.6315 -0.9290 -6.2415
38 1 3.4290 0.5905 -6.7147
39 1 5.4565 -0.0380 -5.4757
40 1 5.0247 -1.3615 -6.5889
41 1 6.4402 -2.9501 -6.2579
42 1 4.7961 -3.4028 -6.7679
43 1 3.9771 -5.6667 -6.4567
44 1 4.5622 -8.0480 -6.2321
45 1 6.8284 -8.6971 -5.5208
46 1 8.5048 -6.9648 -5.0187
47 1 7.9170 -4.5835 -5.2347
48 1 3.9630 -2.0544 -2.5876
49 1 4.7672 -0.4906 -2.8715
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000113692190.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:34:40
Heat of formation + Delta-G solvation = -119.705402 kcal
Electronic energy + Delta-G solvation = -30133.299342 eV
Core-core repulsion = 26024.280473 eV
Total energy + Delta-G solvation = -4109.018868 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.89875 -41.13093 -39.82550 -38.48779 -37.57453 -35.35174 -34.42699 -33.54311
-32.90371 -32.12749 -31.73293 -28.86145 -27.41337 -26.33991 -25.71389 -23.68957
-23.45018 -22.74370 -22.06638 -21.06369 -19.99247 -19.21516 -18.50017 -18.27592
-17.73642 -17.60572 -17.19741 -16.78632 -16.53038 -16.32028 -15.80785 -15.66876
-15.37995 -15.15367 -14.99422 -14.66248 -14.41683 -14.27292 -14.23976 -14.10544
-13.91082 -13.79232 -13.70539 -13.34414 -13.30212 -12.91784 -12.90030 -12.57917
-12.26953 -12.11373 -12.00608 -11.84341 -11.82709 -11.78615 -11.71220 -11.68413
-11.39252 -11.25300 -10.89622 -10.87088 -9.76956 -9.73994 -9.59525 -8.47737
-6.57686 0.44078 0.55590 1.11409 1.20939 1.28068 1.38272 1.62241
1.75894 2.06034 2.16637 2.84372 2.92147 3.49199 3.57865 3.68489
3.69652 3.91366 3.98183 4.00314 4.08104 4.11923 4.19024 4.21810
4.30505 4.36500 4.40961 4.48013 4.49877 4.58553 4.60720 4.67469
4.68426 4.69452 4.79666 4.81523 4.88874 5.04444 5.12212 5.16090
5.17633 5.19404 5.29169 5.37656 5.42138 5.59406 5.61474 5.65930
5.69131 6.09813 6.15897 6.39685 6.46624 6.80633 7.07200 7.17101
8.68767
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.012891 B = 0.002541 C = 0.002228
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2171.598532 B =11015.702072 C =12563.622069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.193 3.807
3 H 0.033 0.967
4 C -0.543 4.543
5 H 0.040 0.960
6 C 0.028 3.972
7 N -0.931 5.931
8 Si 0.945 3.055
9 H -0.250 1.250
10 H -0.281 1.281
11 H -0.255 1.255
12 O -0.356 6.356
13 C 0.454 3.546
14 O -0.537 6.537
15 C -0.082 4.082
16 H 0.118 0.882
17 C -0.102 4.102
18 C -0.124 4.124
19 C 0.095 3.905
20 N -0.608 5.608
21 C 0.509 3.491
22 O -0.583 6.583
23 C -0.089 4.089
24 C -0.083 4.083
25 C -0.121 4.121
26 C -0.133 4.133
27 C -0.133 4.133
28 C -0.134 4.134
29 C -0.123 4.123
30 C 0.127 3.873
31 H 0.057 0.943
32 H 0.060 0.940
33 H 0.067 0.933
34 H 0.276 0.724
35 H 0.074 0.926
36 H 0.069 0.931
37 H 0.078 0.922
38 H 0.115 0.885
39 H 0.085 0.915
40 H 0.127 0.873
41 H 0.134 0.866
42 H 0.137 0.863
43 H 0.131 0.869
44 H 0.137 0.863
45 H 0.138 0.862
46 H 0.136 0.864
47 H 0.129 0.871
48 H 0.070 0.930
49 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.187 -3.676 -29.840 30.913
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.139 3.861
3 H 0.051 0.949
4 C -0.581 4.581
5 H 0.059 0.941
6 C -0.172 4.172
7 N -0.569 5.569
8 Si 0.769 3.231
9 H -0.175 1.175
10 H -0.208 1.208
11 H -0.179 1.179
12 O -0.272 6.272
13 C 0.298 3.702
14 O -0.427 6.427
15 C -0.102 4.102
16 H 0.135 0.865
17 C -0.139 4.139
18 C -0.161 4.161
19 C -0.026 4.026
20 N -0.341 5.341
21 C 0.299 3.701
22 O -0.462 6.462
23 C -0.128 4.128
24 C -0.084 4.084
25 C -0.139 4.139
26 C -0.151 4.151
27 C -0.151 4.151
28 C -0.152 4.152
29 C -0.141 4.141
30 C 0.003 3.997
31 H 0.076 0.924
32 H 0.079 0.921
33 H 0.086 0.914
34 H 0.085 0.915
35 H 0.093 0.907
36 H 0.087 0.913
37 H 0.097 0.903
38 H 0.133 0.867
39 H 0.103 0.897
40 H 0.145 0.855
41 H 0.152 0.848
42 H 0.155 0.845
43 H 0.149 0.851
44 H 0.155 0.845
45 H 0.156 0.844
46 H 0.154 0.846
47 H 0.147 0.853
48 H 0.088 0.912
49 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 7.082 -3.741 -29.098 30.180
hybrid contribution -0.496 0.436 1.437 1.581
sum 6.586 -3.306 -27.661 28.625
Atomic orbital electron populations
1.22407 0.96143 1.02561 1.00927 1.20632 0.92153 0.93003 0.80347
0.94894 1.20960 1.33467 1.13953 0.89714 0.94136 1.25639 0.96931
1.00103 0.94486 1.69972 1.46154 1.41955 0.98830 0.85915 0.79762
0.79259 0.78129 1.17472 1.20787 1.17927 1.86547 1.75986 1.43492
1.21192 1.24293 0.73923 0.85771 0.86238 1.90567 1.49728 1.17612
1.84841 1.21488 0.98642 1.00464 0.89599 0.86454 1.21484 1.03293
0.95693 0.93463 1.22025 0.96552 1.01397 0.96174 1.22352 0.98368
0.93363 0.88484 1.48217 1.62892 1.10394 1.12616 1.21379 0.76884
0.80816 0.90977 1.90770 1.56117 1.56610 1.42674 1.20782 1.04977
0.92841 0.94210 1.19588 0.94225 0.94819 0.99742 1.21276 0.99264
0.93243 1.00156 1.21429 0.97243 0.96534 0.99916 1.21460 0.93801
1.00424 0.99390 1.21422 1.00554 0.93100 1.00080 1.21273 0.96676
0.96979 0.99165 1.21160 0.92455 0.98835 0.87283 0.92422 0.92112
0.91406 0.91457 0.90702 0.91268 0.90336 0.86683 0.89664 0.85497
0.84807 0.84549 0.85111 0.84523 0.84433 0.84592 0.85290 0.91153
0.91245
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -7.38 9.03 71.98 0.65 -6.73 16
2 C 0.19 10.05 2.15 29.85 0.06 10.12 16
3 H 0.03 1.79 6.21 -2.39 -0.01 1.78 16
4 C -0.54 -33.18 9.48 25.60 0.24 -32.94 16
5 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16
6 C 0.03 1.67 5.45 84.66 0.46 2.14 16
7 N -0.93 -58.62 13.96 21.45 0.30 -58.32 16
8 Si 0.94 44.94 24.37 68.60 1.67 46.61 16
9 H -0.25 -10.92 6.87 99.48 0.68 -10.23 16
10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16
11 H -0.25 -11.75 6.53 99.48 0.65 -11.10 16
12 O -0.36 -17.03 9.79 -51.36 -0.50 -17.53 16
13 C 0.45 17.82 7.23 71.24 0.52 18.34 16
14 O -0.54 -22.89 15.20 21.98 0.33 -22.56 16
15 C -0.08 -2.26 2.78 -11.46 -0.03 -2.29 16
16 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16
17 C -0.10 -1.97 4.46 30.62 0.14 -1.84 16
18 C -0.12 -1.21 6.10 30.82 0.19 -1.02 16
19 C 0.10 0.91 6.37 86.51 0.55 1.46 16
20 N -0.61 -12.34 2.97 -818.05 -2.43 -14.77 16
21 C 0.51 11.95 7.69 87.66 0.67 12.63 16
22 O -0.58 -20.93 15.45 -3.03 -0.05 -20.98 16
23 C -0.09 -1.17 4.18 29.10 0.12 -1.05 16
24 C -0.08 -1.59 4.37 -19.87 -0.09 -1.68 16
25 C -0.12 -2.33 9.70 22.27 0.22 -2.12 16
26 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16
27 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16
28 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16
29 C -0.12 -2.40 9.70 22.27 0.22 -2.18 16
30 C 0.13 3.65 5.64 86.36 0.49 4.14 16
31 H 0.06 2.57 3.27 -2.39 -0.01 2.57 16
32 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16
33 H 0.07 2.97 8.14 -2.39 -0.02 2.96 16
34 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16
35 H 0.07 1.51 8.07 -2.39 -0.02 1.49 16
36 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16
37 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16
38 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16
39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16
40 H 0.13 0.28 5.93 -2.39 -0.01 0.27 16
41 H 0.13 0.93 7.88 -2.39 -0.02 0.91 16
42 H 0.14 0.88 7.65 -2.39 -0.02 0.86 16
43 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16
44 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16
45 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16
46 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16
47 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16
48 H 0.07 2.63 7.01 -2.38 -0.02 2.61 16
49 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16
Total: -1.00 -84.28 394.49 5.27 -79.01
By element:
Atomic # 1 Polarization: 17.40 SS G_CDS: 0.86 Total: 18.27 kcal
Atomic # 6 Polarization: -14.80 SS G_CDS: 5.08 Total: -9.73 kcal
Atomic # 7 Polarization: -70.97 SS G_CDS: -2.13 Total: -73.10 kcal
Atomic # 8 Polarization: -60.85 SS G_CDS: -0.22 Total: -61.06 kcal
Atomic # 14 Polarization: 44.94 SS G_CDS: 1.67 Total: 46.61 kcal
Total: -84.28 5.27 -79.01 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000113692190.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.699 kcal
(2) G-P(sol) polarization free energy of solvation -84.275 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.974 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.007 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.705 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds