Wall clock time and date at job start Wed Apr 1 2020 04:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 120.00507 * 2 1 4 4 N 1.34778 * 119.99927 * 179.97438 * 2 1 3 5 5 C 1.46691 * 121.35103 * 355.01304 * 4 2 1 6 6 C 1.50803 * 109.67410 * 224.32081 * 5 4 2 7 7 C 1.38844 * 117.79661 * 169.07634 * 6 5 4 8 8 C 1.37960 * 120.50823 * 179.55716 * 7 6 5 9 9 C 1.38272 * 119.71589 * 359.96500 * 8 7 6 10 10 C 1.37905 * 119.82419 * 0.21731 * 9 8 7 11 11 C 1.37675 * 122.35834 * 348.95608 * 6 5 4 12 12 C 1.50599 * 122.86923 * 0.73670 * 11 6 5 13 13 C 1.47236 * 121.34978 * 175.02850 * 4 2 1 14 14 H 1.09001 * 109.78228 * 235.22950 * 13 4 2 15 15 C 1.50703 * 109.77876 * 355.98830 * 13 4 2 16 16 O 1.20818 * 120.00155 * 76.45560 * 15 13 4 17 17 O 1.34230 * 119.99781 * 256.45909 * 15 13 4 18 18 C 1.45195 * 117.00003 * 179.97438 * 17 15 13 19 19 C 1.52999 * 109.47225 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47307 * 299.99713 * 19 18 17 21 21 C 1.53002 * 109.47113 * 60.00216 * 19 18 17 22 22 C 1.50699 * 109.47152 * 179.97438 * 19 18 17 23 23 H 1.08004 * 120.00373 * 359.97438 * 22 19 18 24 24 C 1.37887 * 120.00113 * 180.02562 * 22 19 18 25 25 N 1.31514 * 119.99676 * 359.97438 * 24 22 19 26 26 Si 1.86799 * 120.00061 * 180.02562 * 24 22 19 27 27 H 1.48499 * 109.47363 * 89.99637 * 26 24 22 28 28 H 1.48498 * 109.47137 * 210.00004 * 26 24 22 29 29 H 1.48496 * 109.47055 * 329.99630 * 26 24 22 30 30 H 1.08994 * 109.47239 * 240.00302 * 1 2 3 31 31 H 1.08996 * 109.46878 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.46641 * 120.00259 * 1 2 3 33 33 H 1.09004 * 109.43303 * 344.37895 * 5 4 2 34 34 H 1.08996 * 109.43718 * 104.25310 * 5 4 2 35 35 H 1.07997 * 119.74579 * 359.52884 * 7 6 5 36 36 H 1.07998 * 120.14145 * 179.97438 * 8 7 6 37 37 H 1.07991 * 120.08499 * 180.23930 * 9 8 7 38 38 H 1.08005 * 119.70621 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.20249 * 219.92914 * 12 11 6 40 40 H 1.09000 * 109.16480 * 100.61077 * 12 11 6 41 41 H 1.09009 * 109.47203 * 299.99747 * 18 17 15 42 42 H 1.08998 * 109.47497 * 59.99799 * 18 17 15 43 43 H 1.09005 * 109.46829 * 60.00286 * 20 19 18 44 44 H 1.08996 * 109.47143 * 179.97438 * 20 19 18 45 45 H 1.08995 * 109.47159 * 300.00356 * 20 19 18 46 46 H 1.08997 * 109.47493 * 59.99731 * 21 19 18 47 47 H 1.08999 * 109.47234 * 180.02562 * 21 19 18 48 48 H 1.09005 * 109.47096 * 299.99758 * 21 19 18 49 49 H 0.96999 * 119.99605 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4817 -2.4521 0.1100 6 6 2.2042 -3.3414 1.0905 7 6 1.5674 -4.5053 1.4999 8 6 2.1812 -5.3640 2.3883 9 6 3.4404 -5.0630 2.8737 10 6 4.0722 -3.9053 2.4707 11 6 3.4549 -3.0365 1.5787 12 6 4.2012 -1.7871 1.1915 13 6 3.6488 -1.2043 -0.1084 14 1 3.9405 -1.8347 -0.9484 15 6 4.1807 0.1913 -0.3094 16 8 4.2431 0.9544 0.6252 17 8 4.5850 0.5866 -1.5268 18 6 5.0853 1.9443 -1.6466 19 6 5.4960 2.2105 -3.0962 20 6 6.5928 1.2250 -3.5047 21 6 4.2828 2.0314 -4.0112 22 6 6.0147 3.6199 -3.2207 23 1 6.0477 4.2619 -2.3528 24 6 6.4462 4.0903 -4.4429 25 7 6.4056 3.3088 -5.4998 26 14 7.0898 5.8372 -4.5970 27 1 8.5548 5.8482 -4.3547 28 1 6.8100 6.3491 -5.9626 29 1 6.4160 6.7030 -3.5963 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 0.4626 -2.2820 0.4574 34 1 1.4554 -2.9351 -0.8667 35 1 0.5840 -4.7400 1.1204 36 1 1.6803 -6.2676 2.7031 37 1 3.9279 -5.7329 3.5664 38 1 5.0556 -3.6719 2.8514 39 1 5.2560 -2.0267 1.0572 40 1 4.0998 -1.0487 1.9869 41 1 4.3040 2.6465 -1.3552 42 1 5.9498 2.0719 -0.9952 43 1 6.2172 0.2057 -3.4148 44 1 6.8851 1.4143 -4.5375 45 1 7.4570 1.3526 -2.8529 46 1 3.5015 2.7334 -3.7202 47 1 4.5756 2.2205 -5.0439 48 1 3.9073 1.0121 -3.9213 49 1 6.7088 3.6399 -6.3597 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184770795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:48 Heat of formation + Delta-G solvation = -108.038225 kcal Electronic energy + Delta-G solvation = -31279.234193 eV Core-core repulsion = 27170.721251 eV Total energy + Delta-G solvation = -4108.512942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.32893 -40.73895 -39.99404 -38.27252 -37.17656 -36.56861 -34.34009 -33.30399 -32.47773 -31.53914 -29.86514 -27.81206 -27.62252 -27.24057 -26.73217 -25.55450 -23.22806 -22.43016 -22.06612 -20.73816 -19.80908 -19.07732 -18.17232 -17.92697 -17.82649 -17.16471 -16.81002 -16.74619 -16.65216 -16.23102 -15.73358 -15.71785 -15.21701 -14.94107 -14.73119 -14.59220 -14.52439 -14.14035 -13.93955 -13.79124 -13.53443 -13.34043 -13.32813 -13.26038 -13.13778 -13.02050 -12.83554 -12.65696 -12.54286 -12.36327 -12.17017 -12.15415 -11.91910 -11.74846 -11.52713 -11.29882 -11.14065 -10.82164 -10.77869 -10.43599 -10.04870 -9.61940 -9.50664 -8.07658 -6.25852 0.40288 0.47405 1.06528 1.40719 1.41315 1.47586 1.51722 1.73227 2.01589 2.42746 2.82373 3.14984 3.40908 3.62772 3.64013 3.71210 3.88430 3.92645 4.04604 4.22221 4.26832 4.29728 4.33515 4.39884 4.45668 4.53087 4.56805 4.60149 4.71399 4.72311 4.76521 4.80725 4.99612 5.00024 5.09262 5.12511 5.15391 5.16056 5.17823 5.32283 5.55965 5.58140 5.59474 5.61237 5.65532 5.72612 6.02674 6.09842 6.13182 6.22636 6.34077 6.75664 6.86447 7.05324 7.41546 8.92519 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020370 B = 0.002635 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.253768 B =10624.886451 C =11160.872916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.490 3.510 3 O -0.572 6.572 4 N -0.606 5.606 5 C 0.149 3.851 6 C -0.108 4.108 7 C -0.107 4.107 8 C -0.121 4.121 9 C -0.122 4.122 10 C -0.130 4.130 11 C -0.084 4.084 12 C -0.078 4.078 13 C 0.158 3.842 14 H 0.126 0.874 15 C 0.464 3.536 16 O -0.529 6.529 17 O -0.356 6.356 18 C 0.110 3.890 19 C 0.063 3.937 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.537 4.537 23 H 0.043 0.957 24 C 0.029 3.971 25 N -0.899 5.899 26 Si 0.955 3.045 27 H -0.274 1.274 28 H -0.276 1.276 29 H -0.277 1.277 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.111 0.889 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.042 0.958 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.020 0.980 46 H 0.011 0.989 47 H 0.068 0.932 48 H 0.027 0.973 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.000 -23.144 13.366 30.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.281 3.719 3 O -0.451 6.451 4 N -0.343 5.343 5 C 0.029 3.971 6 C -0.109 4.109 7 C -0.125 4.125 8 C -0.139 4.139 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.084 4.084 12 C -0.116 4.116 13 C 0.053 3.947 14 H 0.143 0.857 15 C 0.308 3.692 16 O -0.417 6.417 17 O -0.272 6.272 18 C 0.037 3.963 19 C 0.063 3.937 20 C -0.174 4.174 21 C -0.170 4.170 22 C -0.575 4.575 23 H 0.061 0.939 24 C -0.171 4.171 25 N -0.537 5.537 26 Si 0.780 3.220 27 H -0.199 1.199 28 H -0.202 1.202 29 H -0.202 1.202 30 H 0.139 0.861 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.176 0.824 36 H 0.168 0.832 37 H 0.159 0.841 38 H 0.143 0.857 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.030 0.970 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.623 -22.298 13.410 29.371 hybrid contribution 0.929 1.655 0.104 1.901 sum -12.694 -20.643 13.514 27.747 Atomic orbital electron populations 1.21970 0.86357 1.06259 1.07020 1.22124 0.93257 0.82235 0.74262 1.90905 1.70374 1.33030 1.50776 1.48255 1.04194 1.08075 1.73784 1.21008 0.96559 0.79777 0.99766 1.19934 0.94305 0.97306 0.99347 1.21317 1.01085 0.92671 0.97438 1.21472 0.95124 1.00323 0.97001 1.21385 0.95958 0.96594 1.00059 1.21310 1.00712 0.94984 0.97803 1.19317 0.95029 0.95117 0.98981 1.20639 1.00518 0.95586 0.94873 1.20764 0.82669 0.89923 1.01330 0.85669 1.23440 0.74346 0.90364 0.81096 1.90566 1.52035 1.55287 1.43842 1.86419 1.73767 1.34213 1.32841 1.23056 0.95534 0.77722 1.00016 1.18256 0.93440 0.94732 0.87276 1.21600 0.97314 0.96143 1.02318 1.21563 0.96285 0.96728 1.02409 1.21173 1.43600 0.97631 0.95099 0.93870 1.25519 0.95323 1.01079 0.95171 1.69928 1.46995 1.36718 1.00027 0.85614 0.78718 0.80213 0.77421 1.19919 1.20162 1.20228 0.86062 0.89790 0.85916 0.84681 0.87121 0.82426 0.83236 0.84133 0.85682 0.88317 0.91274 0.95093 0.93988 0.94907 0.91454 0.96051 0.96965 0.91350 0.95367 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 8.88 71.24 0.63 -1.78 16 2 C 0.49 14.08 7.73 87.66 0.68 14.76 16 3 O -0.57 -24.60 12.81 21.66 0.28 -24.32 16 4 N -0.61 -14.35 2.93 -804.24 -2.36 -16.71 16 5 C 0.15 1.81 6.05 85.63 0.52 2.32 16 6 C -0.11 -1.55 5.82 -19.82 -0.12 -1.67 16 7 C -0.11 -1.00 9.62 22.35 0.22 -0.78 16 8 C -0.12 -1.16 10.05 22.21 0.22 -0.94 16 9 C -0.12 -1.49 10.05 22.20 0.22 -1.27 16 10 C -0.13 -2.14 9.59 22.37 0.21 -1.92 16 11 C -0.08 -1.61 5.76 -19.85 -0.11 -1.72 16 12 C -0.08 -1.94 5.13 29.75 0.15 -1.78 16 13 C 0.16 4.53 3.34 44.04 0.15 4.68 16 14 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 15 C 0.46 19.25 4.72 71.24 0.34 19.59 16 16 O -0.53 -25.59 13.92 29.78 0.41 -25.17 16 17 O -0.36 -16.38 8.88 -50.29 -0.45 -16.83 16 18 C 0.11 5.71 4.26 71.98 0.31 6.01 16 19 C 0.06 3.40 0.58 -52.93 -0.03 3.37 16 20 C -0.12 -5.92 8.11 71.98 0.58 -5.33 16 21 C -0.11 -5.89 8.11 71.98 0.58 -5.31 16 22 C -0.54 -31.11 8.01 25.60 0.21 -30.90 16 23 H 0.04 2.54 7.74 -2.91 -0.02 2.52 16 24 C 0.03 1.63 5.15 84.66 0.44 2.07 16 25 N -0.90 -50.66 9.35 21.45 0.20 -50.46 16 26 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 28 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 29 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 30 H 0.12 1.03 7.39 -2.39 -0.02 1.01 16 31 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 32 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.14 0.71 6.19 -2.38 -0.01 0.70 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.16 0.42 8.05 -2.91 -0.02 0.39 16 36 H 0.15 0.63 8.06 -2.91 -0.02 0.61 16 37 H 0.14 1.13 8.06 -2.92 -0.02 1.11 16 38 H 0.13 1.87 8.05 -2.91 -0.02 1.85 16 39 H 0.10 2.21 8.11 -2.39 -0.02 2.19 16 40 H 0.07 2.09 7.46 -2.39 -0.02 2.07 16 41 H 0.03 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.04 2.19 8.13 -2.39 -0.02 2.17 16 43 H 0.03 1.51 7.68 -2.38 -0.02 1.49 16 44 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 45 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 48 H 0.03 1.35 7.68 -2.38 -0.02 1.33 16 49 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -81.43 389.72 6.25 -75.18 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.94 Total: 12.29 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.19 Total: -0.62 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -2.16 Total: -67.16 kcal Atomic # 8 Polarization: -66.57 SS G_CDS: 0.25 Total: -66.32 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -81.43 6.25 -75.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184770795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.861 kcal (2) G-P(sol) polarization free energy of solvation -81.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds