Wall clock time and date at job start Wed Apr 1 2020 02:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99929 * 2 1 4 4 H 1.08995 * 109.52787 * 30.07421 * 3 2 1 5 5 C 1.53199 * 109.49489 * 269.99826 * 3 2 1 6 6 N 1.46926 * 108.77709 * 185.41404 * 5 3 2 7 7 C 1.34770 * 120.63046 * 233.58678 * 6 5 3 8 8 O 1.21718 * 120.00313 * 5.34353 * 7 6 5 9 9 C 1.46257 * 120.00133 * 185.34851 * 7 6 5 10 10 C 1.35019 * 120.00290 * 175.02708 * 9 7 6 11 11 C 1.46962 * 119.99842 * 180.02562 * 10 9 7 12 12 C 1.40016 * 120.10097 * 359.72052 * 11 10 9 13 13 C 1.37604 * 119.89136 * 179.79061 * 12 11 10 14 14 C 1.39168 * 120.10717 * 0.46422 * 13 12 11 15 15 O 1.35575 * 119.90225 * 179.76506 * 14 13 12 16 16 C 1.34779 * 116.99688 * 185.35948 * 15 14 13 17 17 H 1.08000 * 120.00261 * 354.96151 * 16 15 14 18 18 C 1.38719 * 119.99481 * 174.96656 * 16 15 14 19 19 N 1.31511 * 120.00328 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99893 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46903 * 90.00075 * 20 18 16 22 22 H 1.48496 * 109.46975 * 210.00154 * 20 18 16 23 23 H 1.48496 * 109.46954 * 330.00130 * 20 18 16 24 24 C 1.39182 * 120.20089 * 359.78937 * 14 13 12 25 25 C 1.37597 * 120.10117 * 359.97226 * 24 14 13 26 26 C 1.46931 * 118.73795 * 53.85694 * 6 5 3 27 27 C 1.53624 * 108.54322 * 306.09932 * 26 6 5 28 28 C 1.53035 * 109.50049 * 150.16353 * 3 2 1 29 29 H 1.09002 * 109.46367 * 61.28968 * 28 3 2 30 30 C 1.53005 * 109.45426 * 301.31705 * 28 3 2 31 31 H 1.08999 * 109.46998 * 60.00571 * 1 2 3 32 32 H 1.08998 * 109.47185 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47303 * 300.00429 * 1 2 3 34 34 H 1.08996 * 109.58690 * 65.62549 * 5 3 2 35 35 H 1.09003 * 109.58693 * 305.20205 * 5 3 2 36 36 H 1.08000 * 119.99556 * 355.02009 * 9 7 6 37 37 H 1.07999 * 119.99681 * 359.71733 * 10 9 7 38 38 H 1.07992 * 120.05437 * 0.02562 * 12 11 10 39 39 H 1.08009 * 119.94578 * 180.25292 * 13 12 11 40 40 H 0.97001 * 120.00283 * 179.97438 * 19 18 16 41 41 H 1.08003 * 119.94635 * 180.02562 * 24 14 13 42 42 H 1.07997 * 120.05303 * 179.97438 * 25 24 14 43 43 H 1.09003 * 109.58447 * 65.92866 * 26 6 5 44 44 H 1.08997 * 109.58470 * 186.35045 * 26 6 5 45 45 H 1.09006 * 109.63131 * 294.86148 * 27 26 6 46 46 H 1.08994 * 109.45818 * 174.74304 * 27 26 6 47 47 H 1.09000 * 109.47227 * 60.00494 * 30 28 3 48 48 H 1.09006 * 109.46582 * 180.02562 * 30 28 3 49 49 H 1.08995 * 109.47266 * 299.99888 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3463 1.9999 0.5148 5 6 2.2182 1.7725 -1.4442 6 7 2.9332 3.0559 -1.4278 7 6 2.4372 4.1266 -2.0788 8 8 1.3418 4.0649 -2.6058 9 6 3.2153 5.3629 -2.1523 10 6 2.7647 6.4015 -2.8880 11 6 3.5469 7.6435 -2.9622 12 6 4.7566 7.7541 -2.2660 13 6 5.4877 8.9174 -2.3420 14 6 5.0216 9.9865 -3.1014 15 8 5.7428 11.1324 -3.1694 16 6 5.1859 12.1676 -3.8288 17 1 4.2449 12.0373 -4.3425 18 6 5.8214 13.4005 -3.8475 19 7 6.9671 13.5594 -3.2216 20 14 5.0499 14.8352 -4.7619 21 1 4.1590 15.5869 -3.8420 22 1 6.1193 15.7362 -5.2617 23 1 4.2582 14.3229 -5.9090 24 6 3.8169 9.8830 -3.7908 25 6 3.0816 8.7219 -3.7247 26 6 4.2024 3.1482 -0.6933 27 6 3.9694 2.6672 0.7470 28 6 3.3611 1.2632 0.7177 29 1 4.0328 0.5875 0.1881 30 6 3.1617 0.7644 2.1504 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.2508 1.8994 -1.9301 35 1 2.8074 1.0328 -1.9862 36 1 4.1502 5.4450 -1.6178 37 1 1.8320 6.3177 -3.4260 38 1 5.1173 6.9264 -1.6735 39 1 6.4230 9.0023 -1.8086 40 1 7.4117 14.4214 -3.2351 41 1 3.4593 10.7150 -4.3792 42 1 2.1467 8.6425 -4.2596 43 1 4.9502 2.5183 -1.1753 44 1 4.5446 4.1830 -0.6837 45 1 3.2869 3.3488 1.2549 46 1 4.9201 2.6408 1.2793 47 1 2.7295 -0.2360 2.1300 48 1 4.1238 0.7347 2.6619 49 1 2.4898 1.4398 2.6800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187732363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:47 Heat of formation + Delta-G solvation = -69.563431 kcal Electronic energy + Delta-G solvation = -29024.730802 eV Core-core repulsion = 24917.886253 eV Total energy + Delta-G solvation = -4106.844549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.49118 -39.23345 -38.67497 -36.95711 -36.65451 -33.93593 -33.29454 -32.34654 -30.78720 -30.44790 -28.90420 -27.93220 -26.90820 -25.69023 -24.09526 -23.42038 -22.64748 -22.08566 -20.98632 -20.06554 -18.74164 -18.08245 -17.47019 -17.10165 -16.69656 -16.21561 -15.83150 -15.50337 -14.99463 -14.80715 -14.66879 -14.41771 -14.29307 -13.87525 -13.85701 -13.75986 -13.54228 -13.33265 -13.12777 -13.09504 -12.79888 -12.53747 -12.21653 -12.00212 -11.91471 -11.79254 -11.73073 -11.61521 -11.31478 -11.14532 -11.09366 -10.95004 -10.78440 -10.68492 -10.55404 -10.07887 -9.73459 -9.62354 -9.52267 -8.91185 -8.71768 -8.40615 -7.13745 -6.67069 -4.21877 1.03767 2.11294 2.51970 2.79939 3.02708 3.03510 3.08268 3.44169 3.52974 3.80649 4.31026 4.39816 4.47336 4.48967 4.69133 4.79473 4.82596 4.90033 4.98412 5.00982 5.05557 5.07061 5.09674 5.21501 5.30399 5.35089 5.41096 5.45174 5.48730 5.51965 5.54470 5.60808 5.62619 5.66744 5.75850 5.89951 5.96762 5.99076 6.09949 6.22849 6.44099 6.49439 6.58222 6.76794 6.84158 6.89612 7.10604 7.21193 7.25075 7.37685 7.61562 7.78201 8.25093 8.77692 9.44371 10.49455 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027521 B = 0.001701 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.154070 B =16459.528877 C =17208.758743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.082 3.918 4 H 0.065 0.935 5 C 0.093 3.907 6 N -0.613 5.613 7 C 0.560 3.440 8 O -0.559 6.559 9 C -0.286 4.286 10 C 0.041 3.959 11 C -0.199 4.199 12 C -0.042 4.042 13 C -0.199 4.199 14 C 0.167 3.833 15 O -0.162 6.162 16 C -0.393 4.393 17 H 0.097 0.903 18 C 0.042 3.958 19 N -0.851 5.851 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.265 1.265 24 C -0.242 4.242 25 C -0.034 4.034 26 C 0.104 3.896 27 C -0.130 4.130 28 C -0.089 4.089 29 H 0.080 0.920 30 C -0.143 4.143 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.274 0.726 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 -22.067 7.560 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.298 6.298 3 C 0.023 3.977 4 H 0.083 0.917 5 C -0.031 4.031 6 N -0.347 5.347 7 C 0.354 3.646 8 O -0.440 6.440 9 C -0.307 4.307 10 C 0.021 3.979 11 C -0.200 4.200 12 C -0.061 4.061 13 C -0.219 4.219 14 C 0.110 3.890 15 O -0.063 6.063 16 C -0.469 4.469 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.484 5.484 20 Si 0.769 3.231 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.189 1.189 24 C -0.261 4.261 25 C -0.053 4.053 26 C -0.019 4.019 27 C -0.168 4.168 28 C -0.107 4.107 29 H 0.098 0.902 30 C -0.201 4.201 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.966 -21.989 7.414 24.228 hybrid contribution -0.526 0.904 -0.420 1.127 sum -7.493 -21.085 6.995 23.444 Atomic orbital electron populations 1.22824 0.80894 1.02735 1.00300 1.87881 1.19778 1.27148 1.94944 1.22503 0.95160 0.84689 0.95353 0.91740 1.21954 0.99104 0.85008 0.97002 1.47842 1.23574 1.10513 1.52816 1.18436 0.85462 0.83564 0.77139 1.90758 1.21309 1.83906 1.47991 1.22504 1.03491 0.94231 1.10473 1.22304 0.95579 0.90177 0.89860 1.18452 0.98479 0.94906 1.08209 1.20855 0.93056 0.95946 0.96204 1.20146 1.02847 0.93229 1.05633 1.19613 0.89767 0.87735 0.91843 1.83904 1.40702 1.17329 1.64324 1.21480 1.07295 0.87276 1.30818 0.88521 1.25398 0.95864 0.98051 0.97139 1.70012 1.14466 1.25304 1.38613 0.85645 0.78664 0.79553 0.79263 1.19620 1.20038 1.18950 1.21105 0.97837 0.99794 1.07404 1.20990 0.97551 0.91826 0.94901 1.21958 0.85388 1.03275 0.91287 1.22101 1.01990 0.95908 0.96812 1.21207 0.95355 0.97230 0.96925 0.90162 1.21754 1.01619 1.01665 0.95019 0.93753 0.89537 0.94009 0.88989 0.90973 0.85530 0.85990 0.86518 0.86105 0.91577 0.85106 0.86813 0.91149 0.88596 0.91090 0.89773 0.91837 0.92494 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.54 9.62 -35.23 -0.34 -3.88 16 3 C 0.08 0.74 2.21 -26.61 -0.06 0.69 16 4 H 0.06 0.63 7.79 -51.93 -0.40 0.22 16 5 C 0.09 0.98 6.06 -3.71 -0.02 0.96 16 6 N -0.61 -6.92 2.97 -174.20 -0.52 -7.43 16 7 C 0.56 8.07 7.61 -13.04 -0.10 7.97 16 8 O -0.56 -9.88 15.66 5.17 0.08 -9.80 16 9 C -0.29 -3.91 8.73 -37.51 -0.33 -4.24 16 10 C 0.04 0.61 9.45 -37.19 -0.35 0.26 16 11 C -0.20 -3.35 5.87 -105.03 -0.62 -3.97 16 12 C -0.04 -0.71 9.40 -39.15 -0.37 -1.07 16 13 C -0.20 -3.91 9.97 -39.47 -0.39 -4.30 16 14 C 0.17 3.79 6.66 -38.89 -0.26 3.53 16 15 O -0.16 -4.35 9.74 0.73 0.01 -4.34 16 16 C -0.39 -10.36 9.48 30.91 0.29 -10.07 16 17 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 18 C 0.04 1.09 5.50 -17.51 -0.10 0.99 16 19 N -0.85 -23.64 13.67 55.48 0.76 -22.88 16 20 Si 0.94 19.38 29.55 -169.99 -5.02 14.36 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 C -0.24 -4.96 9.14 -39.46 -0.36 -5.32 16 25 C -0.03 -0.60 9.78 -39.14 -0.38 -0.99 16 26 C 0.10 0.85 6.34 -3.48 -0.02 0.83 16 27 C -0.13 -0.91 5.38 -26.39 -0.14 -1.05 16 28 C -0.09 -0.67 2.43 -90.58 -0.22 -0.89 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 C -0.14 -0.98 9.03 37.16 0.34 -0.64 16 31 H 0.04 0.33 8.02 -51.93 -0.42 -0.09 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 34 H 0.09 1.13 6.87 -51.93 -0.36 0.77 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.13 1.47 3.90 -52.49 -0.20 1.26 16 37 H 0.12 1.84 7.53 -52.49 -0.40 1.45 16 38 H 0.12 1.56 6.16 -52.49 -0.32 1.24 16 39 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 41 H 0.13 2.65 5.61 -52.48 -0.29 2.36 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.75 5.37 -51.93 -0.28 0.47 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 398.13 15.07 6.00 6.00 Total: -1.00 -30.80 398.13 -8.16 -38.96 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.13 Total: 5.02 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.00 Total: -16.00 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.24 Total: -30.31 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.25 Total: -18.02 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.80 -8.16 -38.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187732363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.606 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds