Wall clock time and date at job start Wed Apr 1 2020 02:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99929 * 2 1 4 4 H 1.08995 * 109.52787 * 30.07421 * 3 2 1 5 5 C 1.53199 * 109.49489 * 269.99826 * 3 2 1 6 6 N 1.46926 * 108.77709 * 185.41404 * 5 3 2 7 7 C 1.34770 * 120.63046 * 233.58678 * 6 5 3 8 8 O 1.21718 * 120.00313 * 5.34353 * 7 6 5 9 9 C 1.46257 * 120.00133 * 185.34851 * 7 6 5 10 10 C 1.35019 * 120.00290 * 175.02708 * 9 7 6 11 11 C 1.46962 * 119.99842 * 180.02562 * 10 9 7 12 12 C 1.40016 * 120.10097 * 359.72052 * 11 10 9 13 13 C 1.37604 * 119.89136 * 179.79061 * 12 11 10 14 14 C 1.39168 * 120.10717 * 0.46422 * 13 12 11 15 15 O 1.35575 * 119.90225 * 179.76506 * 14 13 12 16 16 C 1.34779 * 116.99688 * 185.35948 * 15 14 13 17 17 H 1.08000 * 120.00261 * 354.96151 * 16 15 14 18 18 C 1.38719 * 119.99481 * 174.96656 * 16 15 14 19 19 N 1.31511 * 120.00328 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99893 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46903 * 90.00075 * 20 18 16 22 22 H 1.48496 * 109.46975 * 210.00154 * 20 18 16 23 23 H 1.48496 * 109.46954 * 330.00130 * 20 18 16 24 24 C 1.39182 * 120.20089 * 359.78937 * 14 13 12 25 25 C 1.37597 * 120.10117 * 359.97226 * 24 14 13 26 26 C 1.46931 * 118.73795 * 53.85694 * 6 5 3 27 27 C 1.53624 * 108.54322 * 306.09932 * 26 6 5 28 28 C 1.53035 * 109.50049 * 150.16353 * 3 2 1 29 29 H 1.09002 * 109.46367 * 61.28968 * 28 3 2 30 30 C 1.53005 * 109.45426 * 301.31705 * 28 3 2 31 31 H 1.08999 * 109.46998 * 60.00571 * 1 2 3 32 32 H 1.08998 * 109.47185 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47303 * 300.00429 * 1 2 3 34 34 H 1.08996 * 109.58690 * 65.62549 * 5 3 2 35 35 H 1.09003 * 109.58693 * 305.20205 * 5 3 2 36 36 H 1.08000 * 119.99556 * 355.02009 * 9 7 6 37 37 H 1.07999 * 119.99681 * 359.71733 * 10 9 7 38 38 H 1.07992 * 120.05437 * 0.02562 * 12 11 10 39 39 H 1.08009 * 119.94578 * 180.25292 * 13 12 11 40 40 H 0.97001 * 120.00283 * 179.97438 * 19 18 16 41 41 H 1.08003 * 119.94635 * 180.02562 * 24 14 13 42 42 H 1.07997 * 120.05303 * 179.97438 * 25 24 14 43 43 H 1.09003 * 109.58447 * 65.92866 * 26 6 5 44 44 H 1.08997 * 109.58470 * 186.35045 * 26 6 5 45 45 H 1.09006 * 109.63131 * 294.86148 * 27 26 6 46 46 H 1.08994 * 109.45818 * 174.74304 * 27 26 6 47 47 H 1.09000 * 109.47227 * 60.00494 * 30 28 3 48 48 H 1.09006 * 109.46582 * 180.02562 * 30 28 3 49 49 H 1.08995 * 109.47266 * 299.99888 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3463 1.9999 0.5148 5 6 2.2182 1.7725 -1.4442 6 7 2.9332 3.0559 -1.4278 7 6 2.4372 4.1266 -2.0788 8 8 1.3418 4.0649 -2.6058 9 6 3.2153 5.3629 -2.1523 10 6 2.7647 6.4015 -2.8880 11 6 3.5469 7.6435 -2.9622 12 6 4.7566 7.7541 -2.2660 13 6 5.4877 8.9174 -2.3420 14 6 5.0216 9.9865 -3.1014 15 8 5.7428 11.1324 -3.1694 16 6 5.1859 12.1676 -3.8288 17 1 4.2449 12.0373 -4.3425 18 6 5.8214 13.4005 -3.8475 19 7 6.9671 13.5594 -3.2216 20 14 5.0499 14.8352 -4.7619 21 1 4.1590 15.5869 -3.8420 22 1 6.1193 15.7362 -5.2617 23 1 4.2582 14.3229 -5.9090 24 6 3.8169 9.8830 -3.7908 25 6 3.0816 8.7219 -3.7247 26 6 4.2024 3.1482 -0.6933 27 6 3.9694 2.6672 0.7470 28 6 3.3611 1.2632 0.7177 29 1 4.0328 0.5875 0.1881 30 6 3.1617 0.7644 2.1504 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.2508 1.8994 -1.9301 35 1 2.8074 1.0328 -1.9862 36 1 4.1502 5.4450 -1.6178 37 1 1.8320 6.3177 -3.4260 38 1 5.1173 6.9264 -1.6735 39 1 6.4230 9.0023 -1.8086 40 1 7.4117 14.4214 -3.2351 41 1 3.4593 10.7150 -4.3792 42 1 2.1467 8.6425 -4.2596 43 1 4.9502 2.5183 -1.1753 44 1 4.5446 4.1830 -0.6837 45 1 3.2869 3.3488 1.2549 46 1 4.9201 2.6408 1.2793 47 1 2.7295 -0.2360 2.1300 48 1 4.1238 0.7347 2.6619 49 1 2.4898 1.4398 2.6800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187732363.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:45 Heat of formation + Delta-G solvation = -87.125376 kcal Electronic energy + Delta-G solvation = -29025.492345 eV Core-core repulsion = 24917.886253 eV Total energy + Delta-G solvation = -4107.606092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.42611 -40.81436 -39.62066 -38.48740 -37.49413 -34.81528 -34.70142 -34.02639 -31.97317 -31.57034 -29.98022 -28.96200 -27.68323 -27.39238 -25.13645 -24.20532 -23.81197 -23.43440 -22.03142 -21.09804 -20.12576 -19.39073 -18.82325 -18.53542 -17.49310 -17.14388 -16.65029 -16.49918 -16.33572 -16.21534 -15.91401 -15.64102 -15.60898 -15.23131 -14.96601 -14.68234 -14.55079 -14.43477 -14.13700 -14.08513 -13.93459 -13.65173 -13.48700 -13.31623 -12.97548 -12.79687 -12.70866 -12.59912 -12.57461 -12.24404 -12.20968 -12.12859 -11.94792 -11.61795 -11.44052 -11.21320 -11.12386 -10.93005 -10.73616 -10.57947 -9.88865 -9.65716 -8.68006 -8.52057 -6.17993 -0.26871 0.59042 1.11376 1.36091 1.45881 1.52821 1.89667 2.15319 2.29984 2.79177 2.86244 3.17815 3.42361 3.51507 3.69184 3.79132 3.83943 3.94068 4.02840 4.08147 4.12520 4.22326 4.27915 4.40892 4.45654 4.47575 4.48288 4.49364 4.63609 4.67735 4.75785 4.77692 4.82317 4.86351 4.93576 4.95569 5.03325 5.06148 5.12153 5.19969 5.24531 5.33980 5.35432 5.40075 5.48340 5.59226 5.64257 5.80378 5.97558 6.10397 6.15598 6.36796 6.92430 7.13689 7.69329 8.69854 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027521 B = 0.001701 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.154070 B =16459.528877 C =17208.758743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.390 6.390 3 C 0.087 3.913 4 H 0.055 0.945 5 C 0.092 3.908 6 N -0.604 5.604 7 C 0.550 3.450 8 O -0.596 6.596 9 C -0.249 4.249 10 C 0.020 3.980 11 C -0.171 4.171 12 C -0.035 4.035 13 C -0.206 4.206 14 C 0.130 3.870 15 O -0.219 6.219 16 C -0.417 4.417 17 H 0.105 0.895 18 C -0.018 4.018 19 N -0.912 5.912 20 Si 1.018 2.982 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.253 1.253 24 C -0.250 4.250 25 C -0.040 4.040 26 C 0.094 3.906 27 C -0.124 4.124 28 C -0.087 4.087 29 H 0.084 0.916 30 C -0.139 4.139 31 H 0.038 0.962 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.123 0.877 38 H 0.161 0.839 39 H 0.125 0.875 40 H 0.275 0.725 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.109 0.891 47 H 0.055 0.945 48 H 0.070 0.930 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -25.113 8.508 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.308 6.308 3 C 0.028 3.972 4 H 0.073 0.927 5 C -0.032 4.032 6 N -0.337 5.337 7 C 0.344 3.656 8 O -0.480 6.480 9 C -0.269 4.269 10 C 0.000 4.000 11 C -0.172 4.172 12 C -0.053 4.053 13 C -0.225 4.225 14 C 0.078 3.922 15 O -0.124 6.124 16 C -0.493 4.493 17 H 0.123 0.877 18 C -0.217 4.217 19 N -0.549 5.549 20 Si 0.837 3.163 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.176 1.176 24 C -0.269 4.269 25 C -0.058 4.058 26 C -0.027 4.027 27 C -0.162 4.162 28 C -0.106 4.106 29 H 0.102 0.898 30 C -0.197 4.197 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.173 0.827 37 H 0.140 0.860 38 H 0.178 0.822 39 H 0.143 0.857 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.083 0.917 46 H 0.127 0.873 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.739 -25.127 8.388 27.597 hybrid contribution -0.518 1.161 -0.570 1.393 sum -8.257 -23.966 7.818 26.527 Atomic orbital electron populations 1.22958 0.79995 1.03924 1.00284 1.87870 1.20840 1.27209 1.94901 1.22463 0.96051 0.84487 0.94234 0.92669 1.21999 0.98181 0.84833 0.98138 1.47947 1.24322 1.09840 1.51601 1.18626 0.85141 0.84493 0.77359 1.90757 1.22977 1.84600 1.49670 1.22812 1.03411 0.92977 1.07739 1.22184 0.96072 0.89914 0.91855 1.18753 0.97893 0.94927 1.05635 1.21268 0.92295 0.95925 0.95825 1.20428 1.03447 0.93440 1.05156 1.20199 0.90935 0.87689 0.93356 1.83885 1.42601 1.18716 1.67163 1.21889 1.07921 0.87996 1.31446 0.87746 1.26590 0.96325 1.00687 0.98060 1.70143 1.16713 1.26079 1.41989 0.84597 0.77852 0.75704 0.78179 1.18826 1.19551 1.17647 1.21199 0.97600 1.00815 1.07255 1.21307 0.98352 0.90962 0.95186 1.22294 0.84088 1.04480 0.91826 1.22089 1.03043 0.95067 0.96029 1.21232 0.94286 0.97883 0.97157 0.89781 1.21712 1.02292 1.01062 0.94586 0.94372 0.87834 0.93416 0.91160 0.90138 0.82652 0.85956 0.82161 0.85729 0.91593 0.85815 0.83945 0.89289 0.87600 0.91727 0.87269 0.92632 0.91089 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.39 -6.61 9.62 -148.98 -1.43 -8.04 16 3 C 0.09 1.40 2.21 30.67 0.07 1.46 16 4 H 0.06 0.99 7.79 -2.39 -0.02 0.97 16 5 C 0.09 1.76 6.06 86.37 0.52 2.28 16 6 N -0.60 -11.72 2.97 -823.24 -2.44 -14.16 16 7 C 0.55 14.23 7.61 86.33 0.66 14.88 16 8 O -0.60 -20.12 15.66 -4.41 -0.07 -20.19 16 9 C -0.25 -5.72 8.73 23.61 0.21 -5.52 16 10 C 0.02 0.52 9.45 23.82 0.23 0.75 16 11 C -0.17 -5.22 5.87 -20.13 -0.12 -5.34 16 12 C -0.04 -1.07 9.40 22.55 0.21 -0.85 16 13 C -0.21 -7.96 9.97 22.34 0.22 -7.74 16 14 C 0.13 6.11 6.66 22.72 0.15 6.27 16 15 O -0.22 -12.52 9.74 -20.30 -0.20 -12.72 16 16 C -0.42 -23.26 9.48 67.94 0.64 -22.62 16 17 H 0.11 5.33 5.18 -2.91 -0.02 5.32 16 18 C -0.02 -0.97 5.50 84.86 0.47 -0.50 16 19 N -0.91 -53.87 13.67 21.62 0.30 -53.57 16 20 Si 1.02 41.23 29.55 68.60 2.03 43.26 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 24 C -0.25 -10.35 9.14 22.35 0.20 -10.14 16 25 C -0.04 -1.34 9.78 22.55 0.22 -1.12 16 26 C 0.09 1.12 6.34 86.51 0.55 1.67 16 27 C -0.12 -1.21 5.38 30.82 0.17 -1.05 16 28 C -0.09 -1.03 2.43 -10.77 -0.03 -1.06 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 C -0.14 -1.49 9.03 71.98 0.65 -0.84 16 31 H 0.04 0.54 8.02 -2.39 -0.02 0.52 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 0.56 8.09 -2.39 -0.02 0.54 16 34 H 0.07 1.67 6.87 -2.39 -0.02 1.66 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.16 2.63 3.90 -2.91 -0.01 2.62 16 37 H 0.12 3.36 7.53 -2.91 -0.02 3.34 16 38 H 0.16 3.37 6.16 -2.91 -0.02 3.35 16 39 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 40 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.12 5.21 5.61 -2.91 -0.02 5.19 16 42 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 43 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 1.05 5.37 -2.39 -0.01 1.03 16 45 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.05 0.69 7.65 -2.39 -0.02 0.68 16 48 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 49 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -72.59 398.13 5.39 -67.20 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.96 Total: 26.15 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 6.25 Total: -27.92 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -2.15 Total: -67.73 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -1.70 Total: -40.95 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -72.59 5.39 -67.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187732363.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.927 kcal (2) G-P(sol) polarization free energy of solvation -72.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds