Wall clock time and date at job start Wed Apr 1 2020 02:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99977 * 2 1 4 4 H 1.08999 * 109.49823 * 29.92984 * 3 2 1 5 5 C 1.53632 * 109.66076 * 269.84711 * 3 2 1 6 6 N 1.46927 * 108.54345 * 294.85044 * 5 3 2 7 7 C 1.34776 * 120.63333 * 126.36553 * 6 5 3 8 8 O 1.21723 * 119.99424 * 354.36905 * 7 6 5 9 9 C 1.46248 * 120.00300 * 174.36950 * 7 6 5 10 10 C 1.35017 * 120.00248 * 184.97270 * 9 7 6 11 11 C 1.46967 * 120.00372 * 179.97438 * 10 9 7 12 12 C 1.40025 * 120.10099 * 179.97438 * 11 10 9 13 13 C 1.37594 * 119.89154 * 179.71627 * 12 11 10 14 14 C 1.39173 * 120.10717 * 0.30792 * 13 12 11 15 15 O 1.35566 * 119.90095 * 179.97438 * 14 13 12 16 16 C 1.34788 * 117.00211 * 354.66789 * 15 14 13 17 17 H 1.07999 * 119.99338 * 5.04185 * 16 15 14 18 18 C 1.38708 * 120.00315 * 185.03384 * 16 15 14 19 19 N 1.31511 * 120.00218 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47055 * 90.00520 * 20 18 16 22 22 H 1.48498 * 109.47221 * 209.99779 * 20 18 16 23 23 H 1.48495 * 109.47494 * 330.00089 * 20 18 16 24 24 C 1.39178 * 120.20114 * 359.94706 * 14 13 12 25 25 C 1.37597 * 120.10008 * 0.04913 * 24 14 13 26 26 C 1.46930 * 118.73703 * 306.09533 * 6 5 3 27 27 C 1.53188 * 108.78014 * 53.85805 * 26 6 5 28 28 C 1.53039 * 109.49910 * 149.99935 * 3 2 1 29 29 H 1.09006 * 109.46419 * 178.63878 * 28 3 2 30 30 C 1.52999 * 109.44661 * 298.60228 * 28 3 2 31 31 H 1.08997 * 109.47423 * 300.00784 * 1 2 3 32 32 H 1.09005 * 109.46956 * 60.00738 * 1 2 3 33 33 H 1.08998 * 109.46848 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.74266 * 175.11025 * 5 3 2 35 35 H 1.09001 * 109.66133 * 54.54023 * 5 3 2 36 36 H 1.08006 * 120.00160 * 4.96727 * 9 7 6 37 37 H 1.08007 * 120.00116 * 359.97438 * 10 9 7 38 38 H 1.08001 * 120.04961 * 359.97438 * 12 11 10 39 39 H 1.08007 * 119.94219 * 180.27688 * 13 12 11 40 40 H 0.97001 * 120.00243 * 179.97438 * 19 18 16 41 41 H 1.08002 * 119.94900 * 180.02562 * 24 14 13 42 42 H 1.08000 * 120.04814 * 179.97438 * 25 24 14 43 43 H 1.08993 * 109.58453 * 173.65117 * 26 6 5 44 44 H 1.09003 * 109.58390 * 294.07065 * 26 6 5 45 45 H 1.08999 * 109.49843 * 65.31361 * 27 26 6 46 46 H 1.08995 * 109.50036 * 185.41767 * 27 26 6 47 47 H 1.09008 * 109.46905 * 180.02562 * 30 28 3 48 48 H 1.09002 * 109.47144 * 300.05758 * 30 28 3 49 49 H 1.09000 * 109.47362 * 60.06170 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3447 2.0000 0.5126 5 6 2.2240 1.7761 -1.4467 6 7 3.2200 0.9013 -2.0804 7 6 2.9477 0.2822 -3.2462 8 8 1.8346 0.3624 -3.7322 9 6 3.9895 -0.4857 -3.9271 10 6 3.7477 -1.0218 -5.1425 11 6 4.7948 -1.7930 -5.8271 12 6 4.5460 -2.3503 -7.0874 13 6 5.5313 -3.0666 -7.7270 14 6 6.7715 -3.2431 -7.1206 15 8 7.7392 -3.9501 -7.7543 16 6 7.4008 -4.5466 -8.9147 17 1 6.4219 -4.3827 -9.3406 18 6 8.3097 -5.3706 -9.5619 19 7 9.5015 -5.5704 -9.0431 20 14 7.8409 -6.1966 -11.1705 21 1 8.2103 -5.3140 -12.3062 22 1 8.5630 -7.4884 -11.2925 23 1 6.3768 -6.4440 -11.1916 24 6 7.0215 -2.6956 -5.8657 25 6 6.0422 -1.9777 -5.2185 26 6 4.5207 0.7189 -1.4219 27 6 4.2834 0.2646 0.0217 28 6 3.3593 1.2640 0.7213 29 1 3.8133 2.2548 0.6999 30 6 3.1473 0.8318 2.1736 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 2.5860 2.8042 -1.4498 35 1 1.2836 1.7160 -1.9947 36 1 4.9524 -0.6241 -3.4579 37 1 2.7847 -0.8838 -5.6117 38 1 3.5836 -2.2145 -7.5584 39 1 5.3418 -3.4930 -8.7011 40 1 10.1370 -6.1470 -9.4955 41 1 7.9855 -2.8348 -5.3990 42 1 6.2370 -1.5535 -4.2446 43 1 5.0963 -0.0388 -1.9535 44 1 5.0663 1.6626 -1.4230 45 1 3.8188 -0.7215 0.0210 46 1 5.2357 0.2183 0.5498 47 1 4.1080 0.8026 2.6879 48 1 2.4893 1.5435 2.6722 49 1 2.6939 -0.1592 2.1954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187732379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:51 Heat of formation + Delta-G solvation = -67.485584 kcal Electronic energy + Delta-G solvation = -29356.724312 eV Core-core repulsion = 25249.969865 eV Total energy + Delta-G solvation = -4106.754447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.44642 -39.19101 -38.53362 -36.87073 -36.35130 -33.88042 -33.23091 -32.30499 -30.83229 -30.40959 -28.84291 -27.87089 -26.80204 -25.66206 -24.03907 -23.55797 -22.60078 -22.04074 -20.84814 -19.88121 -18.66963 -18.01530 -17.37609 -17.01858 -16.52236 -16.02865 -15.87000 -15.61894 -14.85179 -14.76414 -14.49901 -14.38247 -14.16115 -13.89729 -13.80890 -13.69590 -13.41727 -13.33460 -13.18109 -12.97824 -12.70753 -12.47873 -12.17778 -11.92486 -11.87680 -11.74530 -11.70003 -11.56068 -11.19638 -11.11709 -11.04542 -10.97146 -10.70807 -10.61564 -10.52175 -9.94889 -9.61206 -9.56831 -9.47660 -8.86422 -8.56828 -8.36500 -7.08869 -6.63750 -4.18704 1.11388 2.15096 2.59051 3.00005 3.04738 3.05797 3.10517 3.52881 3.61954 3.83396 4.33647 4.39082 4.51275 4.53651 4.68766 4.86880 4.92325 4.94329 5.03550 5.09373 5.11247 5.15434 5.18482 5.24409 5.31254 5.36176 5.46701 5.48784 5.52066 5.55311 5.57076 5.62314 5.67441 5.72610 5.81865 5.91572 6.03143 6.12992 6.14883 6.35600 6.48742 6.57517 6.64094 6.81305 6.93642 6.97282 7.14869 7.25542 7.29874 7.49711 7.65674 7.81673 8.37977 8.81128 9.48279 10.52932 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024345 B = 0.001802 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.842194 B =15533.892159 C =16126.058823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.078 3.922 4 H 0.067 0.933 5 C 0.090 3.910 6 N -0.606 5.606 7 C 0.562 3.438 8 O -0.561 6.561 9 C -0.281 4.281 10 C 0.036 3.964 11 C -0.197 4.197 12 C -0.035 4.035 13 C -0.242 4.242 14 C 0.167 3.833 15 O -0.163 6.163 16 C -0.393 4.393 17 H 0.097 0.903 18 C 0.041 3.959 19 N -0.852 5.852 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.265 1.265 24 C -0.199 4.199 25 C -0.043 4.043 26 C 0.107 3.893 27 C -0.128 4.128 28 C -0.088 4.088 29 H 0.081 0.919 30 C -0.144 4.144 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.131 0.869 40 H 0.274 0.726 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.838 13.449 18.558 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C 0.020 3.980 4 H 0.085 0.915 5 C -0.033 4.033 6 N -0.339 5.339 7 C 0.356 3.644 8 O -0.442 6.442 9 C -0.302 4.302 10 C 0.016 3.984 11 C -0.198 4.198 12 C -0.054 4.054 13 C -0.261 4.261 14 C 0.110 3.890 15 O -0.064 6.064 16 C -0.468 4.468 17 H 0.114 0.886 18 C -0.165 4.165 19 N -0.485 5.485 20 Si 0.769 3.231 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 C -0.218 4.218 25 C -0.061 4.061 26 C -0.016 4.016 27 C -0.166 4.166 28 C -0.106 4.106 29 H 0.099 0.901 30 C -0.201 4.201 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.818 13.117 18.286 25.418 hybrid contribution -0.382 -0.139 -0.725 0.831 sum -12.200 12.977 17.561 25.013 Atomic orbital electron populations 1.22777 0.81337 1.02797 0.99622 1.87959 1.19241 1.26742 1.94816 1.22618 0.94992 0.85557 0.94876 0.91476 1.22112 0.94457 0.93116 0.93616 1.47697 1.15539 1.47992 1.22629 1.18347 0.87971 0.78274 0.79795 1.90738 1.23811 1.63276 1.66360 1.22533 0.99990 1.08721 0.98948 1.22283 0.96523 0.87397 0.92182 1.18465 0.95021 1.08841 0.97444 1.20985 0.97652 0.93685 0.93066 1.21099 0.94446 1.07698 1.02875 1.19607 0.87966 0.90298 0.91098 1.83904 1.33153 1.55097 1.34244 1.21467 1.01958 1.26565 0.96846 0.88561 1.25389 0.94899 0.96374 0.99828 1.70014 1.05210 1.34700 1.38607 0.85650 0.79070 0.78634 0.79788 1.19656 1.20061 1.18957 1.20144 1.00768 1.06148 0.94772 1.20859 0.91909 0.95465 0.97906 1.21804 0.84722 1.01770 0.93307 1.21919 0.99576 1.00262 0.94827 1.21228 0.94193 0.99930 0.95261 0.90085 1.21769 1.01554 1.02070 0.94755 0.94393 0.93935 0.89760 0.91050 0.88879 0.85658 0.86046 0.86840 0.85136 0.91624 0.86130 0.86529 0.88915 0.91657 0.90317 0.90720 0.92525 0.93070 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.83 101.05 1.09 1.36 16 2 O -0.37 -3.95 8.94 -35.23 -0.31 -4.27 16 3 C 0.08 0.66 2.37 -26.38 -0.06 0.60 16 4 H 0.07 0.45 7.79 -51.93 -0.40 0.05 16 5 C 0.09 0.91 6.12 -3.48 -0.02 0.89 16 6 N -0.61 -7.15 2.91 -174.20 -0.51 -7.65 16 7 C 0.56 8.52 7.61 -13.04 -0.10 8.42 16 8 O -0.56 -10.26 15.66 5.17 0.08 -10.17 16 9 C -0.28 -4.08 8.72 -37.51 -0.33 -4.40 16 10 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16 11 C -0.20 -3.42 5.87 -105.02 -0.62 -4.03 16 12 C -0.04 -0.64 9.78 -39.15 -0.38 -1.03 16 13 C -0.24 -5.05 9.14 -39.47 -0.36 -5.41 16 14 C 0.17 3.85 6.66 -38.89 -0.26 3.59 16 15 O -0.16 -4.44 9.74 0.73 0.01 -4.43 16 16 C -0.39 -10.48 9.48 30.91 0.29 -10.19 16 17 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.85 -23.93 13.67 55.48 0.76 -23.17 16 20 Si 0.94 19.62 29.55 -169.99 -5.02 14.60 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.20 -4.00 9.97 -39.47 -0.39 -4.39 16 25 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 26 C 0.11 0.96 6.31 -3.71 -0.02 0.93 16 27 C -0.13 -1.02 5.22 -26.61 -0.14 -1.16 16 28 C -0.09 -0.63 2.51 -90.58 -0.23 -0.85 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 C -0.14 -0.93 9.06 37.16 0.34 -0.60 16 31 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.04 0.38 7.84 -51.93 -0.41 -0.03 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.11 6.69 -51.93 -0.35 0.76 16 36 H 0.13 1.57 3.91 -52.48 -0.21 1.37 16 37 H 0.12 1.92 7.53 -52.48 -0.40 1.52 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.13 2.70 5.61 -52.48 -0.29 2.40 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 42 H 0.12 1.64 6.16 -52.49 -0.32 1.32 16 43 H 0.09 0.83 5.37 -51.93 -0.28 0.55 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.80 7.61 -51.93 -0.40 0.41 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 48 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.06 0.50 7.72 -51.93 -0.40 0.10 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -31.80 396.71 -8.11 -39.91 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.08 Total: 5.38 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.01 Total: -16.17 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.25 Total: -30.82 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.23 Total: -18.87 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.80 -8.11 -39.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187732379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.578 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds