Wall clock time and date at job start Wed Apr 1 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99977 * 2 1 4 4 H 1.08999 * 109.49823 * 29.92984 * 3 2 1 5 5 C 1.53632 * 109.66076 * 269.84711 * 3 2 1 6 6 N 1.46927 * 108.54345 * 294.85044 * 5 3 2 7 7 C 1.34776 * 120.63333 * 126.36553 * 6 5 3 8 8 O 1.21723 * 119.99424 * 354.36905 * 7 6 5 9 9 C 1.46248 * 120.00300 * 174.36950 * 7 6 5 10 10 C 1.35017 * 120.00248 * 184.97270 * 9 7 6 11 11 C 1.46967 * 120.00372 * 179.97438 * 10 9 7 12 12 C 1.40025 * 120.10099 * 179.97438 * 11 10 9 13 13 C 1.37594 * 119.89154 * 179.71627 * 12 11 10 14 14 C 1.39173 * 120.10717 * 0.30792 * 13 12 11 15 15 O 1.35566 * 119.90095 * 179.97438 * 14 13 12 16 16 C 1.34788 * 117.00211 * 354.66789 * 15 14 13 17 17 H 1.07999 * 119.99338 * 5.04185 * 16 15 14 18 18 C 1.38708 * 120.00315 * 185.03384 * 16 15 14 19 19 N 1.31511 * 120.00218 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47055 * 90.00520 * 20 18 16 22 22 H 1.48498 * 109.47221 * 209.99779 * 20 18 16 23 23 H 1.48495 * 109.47494 * 330.00089 * 20 18 16 24 24 C 1.39178 * 120.20114 * 359.94706 * 14 13 12 25 25 C 1.37597 * 120.10008 * 0.04913 * 24 14 13 26 26 C 1.46930 * 118.73703 * 306.09533 * 6 5 3 27 27 C 1.53188 * 108.78014 * 53.85805 * 26 6 5 28 28 C 1.53039 * 109.49910 * 149.99935 * 3 2 1 29 29 H 1.09006 * 109.46419 * 178.63878 * 28 3 2 30 30 C 1.52999 * 109.44661 * 298.60228 * 28 3 2 31 31 H 1.08997 * 109.47423 * 300.00784 * 1 2 3 32 32 H 1.09005 * 109.46956 * 60.00738 * 1 2 3 33 33 H 1.08998 * 109.46848 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.74266 * 175.11025 * 5 3 2 35 35 H 1.09001 * 109.66133 * 54.54023 * 5 3 2 36 36 H 1.08006 * 120.00160 * 4.96727 * 9 7 6 37 37 H 1.08007 * 120.00116 * 359.97438 * 10 9 7 38 38 H 1.08001 * 120.04961 * 359.97438 * 12 11 10 39 39 H 1.08007 * 119.94219 * 180.27688 * 13 12 11 40 40 H 0.97001 * 120.00243 * 179.97438 * 19 18 16 41 41 H 1.08002 * 119.94900 * 180.02562 * 24 14 13 42 42 H 1.08000 * 120.04814 * 179.97438 * 25 24 14 43 43 H 1.08993 * 109.58453 * 173.65117 * 26 6 5 44 44 H 1.09003 * 109.58390 * 294.07065 * 26 6 5 45 45 H 1.08999 * 109.49843 * 65.31361 * 27 26 6 46 46 H 1.08995 * 109.50036 * 185.41767 * 27 26 6 47 47 H 1.09008 * 109.46905 * 180.02562 * 30 28 3 48 48 H 1.09002 * 109.47144 * 300.05758 * 30 28 3 49 49 H 1.09000 * 109.47362 * 60.06170 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3447 2.0000 0.5126 5 6 2.2240 1.7761 -1.4467 6 7 3.2200 0.9013 -2.0804 7 6 2.9477 0.2822 -3.2462 8 8 1.8346 0.3624 -3.7322 9 6 3.9895 -0.4857 -3.9271 10 6 3.7477 -1.0218 -5.1425 11 6 4.7948 -1.7930 -5.8271 12 6 4.5460 -2.3503 -7.0874 13 6 5.5313 -3.0666 -7.7270 14 6 6.7715 -3.2431 -7.1206 15 8 7.7392 -3.9501 -7.7543 16 6 7.4008 -4.5466 -8.9147 17 1 6.4219 -4.3827 -9.3406 18 6 8.3097 -5.3706 -9.5619 19 7 9.5015 -5.5704 -9.0431 20 14 7.8409 -6.1966 -11.1705 21 1 8.2103 -5.3140 -12.3062 22 1 8.5630 -7.4884 -11.2925 23 1 6.3768 -6.4440 -11.1916 24 6 7.0215 -2.6956 -5.8657 25 6 6.0422 -1.9777 -5.2185 26 6 4.5207 0.7189 -1.4219 27 6 4.2834 0.2646 0.0217 28 6 3.3593 1.2640 0.7213 29 1 3.8133 2.2548 0.6999 30 6 3.1473 0.8318 2.1736 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 2.5860 2.8042 -1.4498 35 1 1.2836 1.7160 -1.9947 36 1 4.9524 -0.6241 -3.4579 37 1 2.7847 -0.8838 -5.6117 38 1 3.5836 -2.2145 -7.5584 39 1 5.3418 -3.4930 -8.7011 40 1 10.1370 -6.1470 -9.4955 41 1 7.9855 -2.8348 -5.3990 42 1 6.2370 -1.5535 -4.2446 43 1 5.0963 -0.0388 -1.9535 44 1 5.0663 1.6626 -1.4230 45 1 3.8188 -0.7215 0.0210 46 1 5.2357 0.2183 0.5498 47 1 4.1080 0.8026 2.6879 48 1 2.4893 1.5435 2.6722 49 1 2.6939 -0.1592 2.1954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187732379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:49 Heat of formation + Delta-G solvation = -85.998744 kcal Electronic energy + Delta-G solvation = -29357.527102 eV Core-core repulsion = 25249.969865 eV Total energy + Delta-G solvation = -4107.557238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.37348 -40.81619 -39.53083 -38.47028 -37.18560 -34.78677 -34.65395 -34.01395 -31.97934 -31.61160 -29.95786 -28.91983 -27.62496 -27.39411 -25.12460 -24.29358 -23.84749 -23.39738 -21.98243 -20.88299 -20.07990 -19.35437 -18.81325 -18.46733 -17.33588 -16.86425 -16.70402 -16.61073 -16.37916 -16.21372 -15.92004 -15.61363 -15.44989 -15.19724 -14.83299 -14.70095 -14.53237 -14.32575 -14.15175 -14.09374 -13.91120 -13.59478 -13.48091 -13.31219 -12.94877 -12.75622 -12.70779 -12.56530 -12.52659 -12.27692 -12.20110 -12.12897 -11.83922 -11.57887 -11.35618 -11.21578 -11.11393 -10.78668 -10.64866 -10.57235 -9.89525 -9.50551 -8.67168 -8.52009 -6.18043 -0.24948 0.58307 1.13575 1.35880 1.45890 1.52986 2.07328 2.15356 2.36417 2.86216 2.88752 3.17692 3.41881 3.56102 3.74689 3.83853 3.87070 3.96148 4.05513 4.08006 4.20245 4.26500 4.34629 4.44819 4.47940 4.48554 4.50791 4.58699 4.63791 4.64405 4.75741 4.81285 4.84715 4.93344 4.94395 4.98356 5.04177 5.09676 5.14807 5.19655 5.28496 5.34011 5.38199 5.52845 5.56454 5.62707 5.64850 5.80835 5.97473 6.09867 6.30103 6.45772 6.92338 7.23316 7.69271 8.69971 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024345 B = 0.001802 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.842194 B =15533.892159 C =16126.058823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.394 6.394 3 C 0.077 3.923 4 H 0.087 0.913 5 C 0.085 3.915 6 N -0.599 5.599 7 C 0.550 3.450 8 O -0.599 6.599 9 C -0.248 4.248 10 C 0.015 3.985 11 C -0.170 4.170 12 C -0.041 4.041 13 C -0.248 4.248 14 C 0.130 3.870 15 O -0.219 6.219 16 C -0.417 4.417 17 H 0.105 0.895 18 C -0.019 4.019 19 N -0.913 5.913 20 Si 1.018 2.982 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.253 1.253 24 C -0.205 4.205 25 C -0.037 4.037 26 C 0.098 3.902 27 C -0.124 4.124 28 C -0.086 4.086 29 H 0.103 0.897 30 C -0.140 4.140 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.152 0.848 37 H 0.122 0.878 38 H 0.143 0.857 39 H 0.125 0.875 40 H 0.275 0.725 41 H 0.125 0.875 42 H 0.158 0.842 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.052 0.948 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.293 15.875 21.046 29.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.313 6.313 3 C 0.019 3.981 4 H 0.105 0.895 5 C -0.038 4.038 6 N -0.329 5.329 7 C 0.343 3.657 8 O -0.483 6.483 9 C -0.268 4.268 10 C -0.005 4.005 11 C -0.171 4.171 12 C -0.059 4.059 13 C -0.268 4.268 14 C 0.078 3.922 15 O -0.124 6.124 16 C -0.492 4.492 17 H 0.122 0.878 18 C -0.218 4.218 19 N -0.550 5.550 20 Si 0.837 3.163 21 H -0.187 1.187 22 H -0.195 1.195 23 H -0.177 1.177 24 C -0.224 4.224 25 C -0.055 4.055 26 C -0.023 4.023 27 C -0.162 4.162 28 C -0.104 4.104 29 H 0.121 0.879 30 C -0.197 4.197 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.169 0.831 37 H 0.140 0.860 38 H 0.161 0.839 39 H 0.143 0.857 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.175 0.825 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.071 0.929 46 H 0.115 0.885 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.308 15.600 20.847 29.241 hybrid contribution -0.262 -0.502 -1.025 1.171 sum -13.570 15.097 19.822 28.372 Atomic orbital electron populations 1.22834 0.80679 1.02988 1.00174 1.87931 1.20181 1.28293 1.94879 1.22772 0.96235 0.85126 0.94014 0.89475 1.22315 0.93182 0.94157 0.94169 1.47840 1.16906 1.46711 1.21490 1.18525 0.87528 0.78771 0.80895 1.90732 1.25227 1.64656 1.67652 1.22855 1.00571 1.05575 0.97818 1.22165 0.96291 0.88916 0.93105 1.18763 0.95188 1.06462 0.96665 1.21300 0.98190 0.92920 0.93457 1.21195 0.94458 1.08169 1.02937 1.20176 0.88626 0.90918 0.92461 1.83885 1.35047 1.58024 1.35405 1.21889 1.02637 1.27300 0.97399 0.87750 1.26605 0.94696 0.96864 1.03590 1.70146 1.06788 1.37037 1.41007 0.84588 0.79237 0.77483 0.74955 1.18743 1.19543 1.17679 1.20414 1.01868 1.06148 0.93987 1.21247 0.90844 0.94254 0.99141 1.22104 0.83354 1.03292 0.93570 1.21887 1.00667 0.99115 0.94524 1.21290 0.93155 1.00804 0.95183 0.87854 1.21721 1.02202 1.01255 0.94547 0.92198 0.94927 0.89899 0.88444 0.91270 0.83108 0.86023 0.83933 0.85726 0.91586 0.85748 0.82455 0.88781 0.89007 0.92876 0.88528 0.91487 0.92120 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.83 113.37 1.23 1.70 16 2 O -0.39 -7.76 8.94 -148.98 -1.33 -9.10 16 3 C 0.08 1.08 2.37 30.82 0.07 1.15 16 4 H 0.09 0.88 7.79 -2.39 -0.02 0.86 16 5 C 0.08 1.47 6.12 86.51 0.53 2.00 16 6 N -0.60 -12.27 2.91 -823.25 -2.39 -14.66 16 7 C 0.55 15.31 7.61 86.32 0.66 15.96 16 8 O -0.60 -21.18 15.66 -4.42 -0.07 -21.25 16 9 C -0.25 -6.31 8.72 23.61 0.21 -6.10 16 10 C 0.02 0.43 9.45 23.82 0.23 0.66 16 11 C -0.17 -5.48 5.87 -20.12 -0.12 -5.59 16 12 C -0.04 -1.42 9.78 22.55 0.22 -1.20 16 13 C -0.25 -10.55 9.14 22.34 0.20 -10.35 16 14 C 0.13 6.25 6.66 22.72 0.15 6.40 16 15 O -0.22 -12.69 9.74 -20.29 -0.20 -12.88 16 16 C -0.42 -23.51 9.48 67.93 0.64 -22.87 16 17 H 0.11 5.40 5.18 -2.91 -0.02 5.38 16 18 C -0.02 -1.04 5.49 84.85 0.47 -0.57 16 19 N -0.91 -54.40 13.67 21.62 0.30 -54.11 16 20 Si 1.02 41.68 29.55 68.60 2.03 43.71 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 24 C -0.21 -8.22 9.97 22.34 0.22 -7.99 16 25 C -0.04 -1.18 9.40 22.55 0.21 -0.97 16 26 C 0.10 1.34 6.31 86.36 0.54 1.89 16 27 C -0.12 -1.52 5.22 30.67 0.16 -1.36 16 28 C -0.09 -0.89 2.51 -10.77 -0.03 -0.92 16 29 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 30 C -0.14 -1.35 9.06 71.98 0.65 -0.70 16 31 H 0.06 0.66 8.09 -2.39 -0.02 0.64 16 32 H 0.03 0.57 7.84 -2.38 -0.02 0.55 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.57 6.69 -2.39 -0.02 1.55 16 36 H 0.15 3.01 3.91 -2.91 -0.01 3.00 16 37 H 0.12 3.58 7.53 -2.91 -0.02 3.56 16 38 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.13 5.34 5.61 -2.91 -0.02 5.33 16 40 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 42 H 0.16 3.67 6.16 -2.91 -0.02 3.65 16 43 H 0.09 1.24 5.37 -2.39 -0.01 1.23 16 44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 0.95 7.61 -2.39 -0.02 0.93 16 46 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 48 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.04 0.61 7.72 -2.39 -0.02 0.60 16 Total: -1.00 -75.14 396.71 5.54 -69.60 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.96 Total: 27.55 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 6.25 Total: -28.87 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -2.10 Total: -68.77 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -1.60 Total: -43.23 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -75.14 5.54 -69.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187732379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.401 kcal (2) G-P(sol) polarization free energy of solvation -75.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds