Wall clock time and date at job start Wed Apr 1 2020 04:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47579 * 2 1 4 4 C 1.42900 * 114.00062 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46680 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.88961 * 57.42603 * 5 4 3 7 7 C 1.55157 * 111.03382 * 181.33091 * 5 4 3 8 8 C 1.54338 * 103.02305 * 153.39781 * 7 5 4 9 9 N 1.47027 * 107.26058 * 338.13684 * 8 7 5 10 10 C 1.34778 * 125.64520 * 178.84613 * 9 8 7 11 11 O 1.21715 * 119.99846 * 179.69370 * 10 9 8 12 12 C 1.46252 * 120.00220 * 359.70003 * 10 9 8 13 13 C 1.35025 * 120.00410 * 173.14638 * 12 10 9 14 14 C 1.46965 * 119.99521 * 346.79825 * 13 12 10 15 15 C 1.40017 * 120.09653 * 135.34986 * 14 13 12 16 16 C 1.37598 * 119.89514 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10230 * 0.25844 * 16 15 14 18 18 O 1.35568 * 119.89853 * 179.74965 * 17 16 15 19 19 C 1.34783 * 117.00298 * 7.24932 * 18 17 16 20 20 H 1.07998 * 119.99940 * 6.24827 * 19 18 17 21 21 C 1.38720 * 119.99876 * 186.24363 * 19 18 17 22 22 N 1.31503 * 120.00083 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99574 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47353 * 90.00293 * 23 21 19 25 25 H 1.48500 * 109.46990 * 210.00189 * 23 21 19 26 26 H 1.48497 * 109.47391 * 329.99783 * 23 21 19 27 27 C 1.39173 * 120.19801 * 359.48043 * 17 16 15 28 28 C 1.37596 * 120.10646 * 0.51747 * 27 17 16 29 29 C 1.47424 * 108.70298 * 358.58834 * 9 8 7 30 30 H 1.09000 * 109.47072 * 59.99499 * 1 2 3 31 31 H 1.09005 * 109.47651 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47177 * 300.00124 * 1 2 3 33 33 H 1.09002 * 109.46671 * 239.99741 * 2 1 3 34 34 H 1.09000 * 109.47072 * 120.00501 * 2 1 3 35 35 H 1.08996 * 109.47244 * 60.00412 * 4 3 2 36 36 H 1.08997 * 109.46721 * 299.99538 * 4 3 2 37 37 H 1.09004 * 110.72167 * 271.95530 * 7 5 4 38 38 H 1.09003 * 110.72042 * 35.22785 * 7 5 4 39 39 H 1.08997 * 109.98832 * 218.66937 * 8 7 5 40 40 H 1.08996 * 109.78142 * 97.49451 * 8 7 5 41 41 H 1.07998 * 119.99890 * 353.15221 * 12 10 9 42 42 H 1.07992 * 120.00067 * 166.79114 * 13 12 10 43 43 H 1.07999 * 120.05763 * 359.97438 * 15 14 13 44 44 H 1.08000 * 119.95290 * 179.97438 * 16 15 14 45 45 H 0.96999 * 119.99780 * 180.02562 * 22 21 19 46 46 H 1.08011 * 119.94614 * 180.26051 * 27 17 16 47 47 H 1.08002 * 120.05630 * 179.71514 * 28 27 17 48 48 H 1.09001 * 110.36412 * 143.19372 * 29 9 8 49 49 H 1.08996 * 110.36699 * 265.51174 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 -0.0006 5 6 3.8254 2.9382 0.0001 6 1 3.3963 3.4546 0.8588 7 6 5.3679 3.1030 -0.0341 8 6 5.5556 4.4812 -0.7029 9 7 4.3299 4.7681 -1.4625 10 6 4.0896 5.8888 -2.1716 11 8 3.0368 6.0170 -2.7687 12 6 5.0938 6.9507 -2.2237 13 6 4.9149 8.0097 -3.0420 14 6 3.8785 7.9669 -4.0831 15 6 3.0388 9.0692 -4.2837 16 6 2.0702 9.0248 -5.2600 17 6 1.9209 7.8845 -6.0438 18 8 0.9618 7.8433 -7.0012 19 6 0.2899 8.9862 -7.2438 20 1 0.5917 9.9032 -6.7597 21 6 -0.7893 8.9846 -8.1154 22 7 -1.1571 7.8679 -8.7045 23 14 -1.7201 10.5688 -8.4522 24 1 -1.1051 11.2680 -9.6089 25 1 -3.1380 10.2537 -8.7611 26 1 -1.6572 11.4441 -7.2543 27 6 2.7568 6.7885 -5.8516 28 6 3.7282 6.8238 -4.8778 29 6 3.4099 3.6244 -1.3250 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8333 0.9766 -0.8908 36 1 3.8340 0.9763 0.8892 37 1 5.7783 3.1026 0.9757 38 1 5.8261 2.3197 -0.6380 39 1 6.4118 4.4547 -1.3770 40 1 5.7058 5.2443 0.0607 41 1 5.9786 6.8879 -1.6076 42 1 5.5333 8.8881 -2.9315 43 1 3.1511 9.9530 -3.6732 44 1 1.4217 9.8744 -5.4153 45 1 -1.9114 7.8669 -9.3142 46 1 2.6401 5.9072 -6.4650 47 1 4.3735 5.9711 -4.7262 48 1 2.3787 3.9722 -1.2650 49 1 3.5312 2.9373 -2.1624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255843281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:54 Heat of formation + Delta-G solvation = -79.575052 kcal Electronic energy + Delta-G solvation = -29347.841533 eV Core-core repulsion = 25240.562847 eV Total energy + Delta-G solvation = -4107.278686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.27213 -40.62362 -39.45726 -38.48657 -37.73501 -34.63482 -34.04570 -33.59018 -31.88434 -31.84764 -30.18521 -29.64725 -27.56397 -26.93355 -24.51915 -23.82465 -23.61499 -23.32365 -21.99260 -21.33261 -19.99200 -19.49099 -18.78630 -18.26077 -17.84484 -17.25919 -16.83996 -16.55616 -16.41617 -16.25450 -15.69447 -15.55208 -15.40213 -15.26801 -14.78672 -14.61764 -14.47962 -14.38527 -14.06736 -13.95336 -13.61522 -13.58983 -13.50415 -13.39053 -13.14567 -12.90543 -12.65505 -12.44289 -12.33536 -12.27742 -12.18232 -12.13611 -12.06075 -11.78999 -11.60781 -11.30845 -10.94882 -10.70125 -10.54264 -10.39376 -9.79489 -9.46538 -8.59584 -8.50092 -6.17210 -0.02910 0.68114 1.07750 1.32554 1.44584 1.51435 2.11071 2.16372 2.43292 2.68129 2.85013 3.19534 3.48224 3.51816 3.61890 3.86252 3.98230 4.02720 4.12148 4.14782 4.14884 4.24474 4.29697 4.37746 4.42142 4.48501 4.52602 4.54063 4.57004 4.65431 4.74501 4.76136 4.80662 4.89045 4.95142 5.00592 5.02091 5.07363 5.08939 5.19651 5.22718 5.23593 5.29499 5.36300 5.51003 5.65448 5.70325 5.82374 6.00353 6.22536 6.29257 6.63032 6.93944 7.34199 7.76133 8.73770 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.002353 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.138452 B =11894.328774 C =14052.136914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.053 3.947 3 O -0.420 6.420 4 C 0.072 3.928 5 C -0.092 4.092 6 H 0.087 0.913 7 C -0.111 4.111 8 C 0.093 3.907 9 N -0.624 5.624 10 C 0.537 3.463 11 O -0.574 6.574 12 C -0.227 4.227 13 C 0.007 3.993 14 C -0.156 4.156 15 C -0.049 4.049 16 C -0.255 4.255 17 C 0.125 3.875 18 O -0.231 6.231 19 C -0.415 4.415 20 H 0.102 0.898 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.023 2.977 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.252 1.252 27 C -0.219 4.219 28 C 0.004 3.996 29 C 0.113 3.887 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.150 0.850 44 H 0.121 0.879 45 H 0.274 0.726 46 H 0.101 0.899 47 H 0.117 0.883 48 H 0.040 0.960 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.218 -11.210 23.839 32.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 O -0.340 6.340 4 C -0.004 4.004 5 C -0.111 4.111 6 H 0.105 0.895 7 C -0.149 4.149 8 C -0.028 4.028 9 N -0.358 5.358 10 C 0.330 3.670 11 O -0.455 6.455 12 C -0.247 4.247 13 C -0.012 4.012 14 C -0.157 4.157 15 C -0.067 4.067 16 C -0.274 4.274 17 C 0.075 3.925 18 O -0.138 6.138 19 C -0.491 4.491 20 H 0.120 0.880 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.842 3.158 24 H -0.184 1.184 25 H -0.195 1.195 26 H -0.176 1.176 27 C -0.239 4.239 28 C -0.014 4.014 29 C -0.010 4.010 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.190 0.810 42 H 0.191 0.809 43 H 0.167 0.833 44 H 0.139 0.861 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.135 0.865 48 H 0.058 0.942 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.310 -11.193 23.206 31.040 hybrid contribution -1.140 -0.013 -0.767 1.374 sum 16.170 -11.206 22.440 29.842 Atomic orbital electron populations 1.21795 0.93972 1.03237 1.02212 1.22601 0.95659 0.82913 1.01090 1.87911 1.22401 1.28047 1.95639 1.22534 0.80734 0.95291 1.01857 1.22312 0.97640 0.94858 0.96309 0.89509 1.22684 0.92541 0.96148 1.03514 1.22364 0.86370 0.98385 0.95689 1.48622 1.19729 1.16841 1.50596 1.18901 0.87998 0.82063 0.78033 1.91002 1.29318 1.79676 1.45490 1.23030 1.00732 0.95196 1.05770 1.22625 0.92280 0.97501 0.88766 1.18888 1.01665 0.94563 1.00537 1.21195 0.92789 0.97942 0.94740 1.21114 1.05030 0.99250 1.01999 1.20011 0.88977 0.95097 0.88453 1.83892 1.44188 1.36804 1.48879 1.21882 1.12724 0.86304 1.28189 0.88023 1.26713 0.96872 1.03312 0.95345 1.70181 1.27657 1.29262 1.28873 0.84536 0.76876 0.74785 0.79646 1.18378 1.19488 1.17605 1.20187 1.00494 0.98026 1.05150 1.20658 0.94180 0.95478 0.91081 1.22106 0.93419 0.87501 0.97981 0.93549 0.89032 0.92300 0.92871 0.91503 0.92419 0.90224 0.86617 0.89003 0.89411 0.89346 0.80969 0.80888 0.83275 0.86134 0.91734 0.88111 0.86542 0.94165 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.42 -8.58 10.20 -148.98 -1.52 -10.10 16 4 C 0.07 0.99 5.38 71.98 0.39 1.37 16 5 C -0.09 -1.37 3.33 -9.40 -0.03 -1.41 16 6 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 7 C -0.11 -0.84 6.42 31.79 0.20 -0.63 16 8 C 0.09 1.07 6.08 86.73 0.53 1.59 16 9 N -0.62 -14.58 3.33 -816.97 -2.72 -17.30 16 10 C 0.54 16.36 6.85 86.33 0.59 16.96 16 11 O -0.57 -24.59 12.74 -4.40 -0.06 -24.65 16 12 C -0.23 -4.97 9.39 23.61 0.22 -4.75 16 13 C 0.01 0.18 9.79 23.82 0.23 0.41 16 14 C -0.16 -5.70 4.43 -20.13 -0.09 -5.78 16 15 C -0.05 -1.90 9.78 22.55 0.22 -1.68 16 16 C -0.25 -12.45 9.10 22.34 0.20 -12.25 16 17 C 0.13 7.07 6.65 22.72 0.15 7.23 16 18 O -0.23 -15.21 9.74 -20.26 -0.20 -15.41 16 19 C -0.42 -25.82 9.41 67.94 0.64 -25.18 16 20 H 0.10 5.80 5.33 -2.91 -0.02 5.79 16 21 C -0.03 -1.51 5.49 84.86 0.47 -1.04 16 22 N -0.92 -59.57 13.67 21.62 0.30 -59.27 16 23 Si 1.02 44.97 29.55 68.60 2.03 47.00 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 27 C -0.22 -11.18 9.97 22.34 0.22 -10.95 16 28 C 0.00 0.18 6.75 22.55 0.15 0.33 16 29 C 0.11 2.80 6.24 86.85 0.54 3.34 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 38 H 0.09 0.51 8.04 -2.39 -0.02 0.49 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 0.71 8.11 -2.39 -0.02 0.69 16 41 H 0.17 2.05 7.37 -2.91 -0.02 2.03 16 42 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 43 H 0.15 4.49 8.06 -2.91 -0.02 4.46 16 44 H 0.12 5.87 5.74 -2.91 -0.02 5.85 16 45 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 46 H 0.10 5.18 8.06 -2.90 -0.02 5.15 16 47 H 0.12 4.42 7.23 -2.91 -0.02 4.40 16 48 H 0.04 1.31 8.04 -2.39 -0.02 1.30 16 49 H 0.06 1.45 8.00 -2.39 -0.02 1.43 16 Total: -1.00 -90.10 404.26 4.63 -85.47 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.93 Total: 27.06 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 5.86 Total: -32.81 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -2.42 Total: -76.57 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -1.77 Total: -50.16 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -90.10 4.63 -85.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255843281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.900 kcal (2) G-P(sol) polarization free energy of solvation -90.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds