Wall clock time and date at job start Wed Apr 1 2020 03:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46959 * 2 1 4 4 O 1.42897 * 109.47267 * 120.00842 * 2 1 3 5 5 C 1.53004 * 109.46763 * 240.00527 * 2 1 3 6 6 C 1.53044 * 109.46034 * 300.02784 * 5 2 1 7 7 C 1.53190 * 109.31322 * 178.60119 * 6 5 2 8 8 N 1.46934 * 108.76522 * 54.65297 * 7 6 5 9 9 C 1.34778 * 120.62951 * 126.35879 * 8 7 6 10 10 O 1.21723 * 120.00027 * 174.92389 * 9 8 7 11 11 C 1.46258 * 120.00151 * 354.92723 * 9 8 7 12 12 C 1.35020 * 120.00079 * 185.16304 * 11 9 8 13 13 C 1.46961 * 120.00138 * 180.02562 * 12 11 9 14 14 C 1.40023 * 120.09775 * 359.72319 * 13 12 11 15 15 C 1.37599 * 119.89482 * 179.69476 * 14 13 12 16 16 C 1.39181 * 120.10001 * 0.60373 * 15 14 13 17 17 O 1.35568 * 119.89490 * 179.69157 * 16 15 14 18 18 C 1.34784 * 116.99483 * 185.53743 * 17 16 15 19 19 H 1.07995 * 120.00571 * 354.95067 * 18 17 16 20 20 C 1.38720 * 119.99731 * 174.94111 * 18 17 16 21 21 N 1.31506 * 120.00431 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00143 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47175 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47034 * 120.00185 * 22 20 18 25 25 H 1.48495 * 109.47629 * 240.00493 * 22 20 18 26 26 C 1.39175 * 120.20232 * 359.67195 * 16 15 14 27 27 C 1.37596 * 120.10445 * 0.02562 * 26 16 15 28 28 C 1.46920 * 118.73701 * 306.38773 * 8 7 6 29 29 C 1.53037 * 109.46055 * 179.97438 * 5 2 1 30 30 H 1.09006 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47368 * 59.99381 * 1 2 3 32 32 H 1.09002 * 109.46807 * 299.99290 * 1 2 3 33 33 H 0.96698 * 114.00586 * 59.99672 * 4 2 1 34 34 H 1.09000 * 109.45951 * 59.99813 * 5 2 1 35 35 H 1.09009 * 109.49556 * 298.56480 * 6 5 2 36 36 H 1.08995 * 109.50046 * 58.65916 * 6 5 2 37 37 H 1.08995 * 109.60099 * 294.86546 * 7 6 5 38 38 H 1.09005 * 109.70410 * 174.49933 * 7 6 5 39 39 H 1.07999 * 119.99859 * 5.16726 * 11 9 8 40 40 H 1.08008 * 119.99677 * 359.97438 * 12 11 9 41 41 H 1.07998 * 120.05321 * 0.02562 * 14 13 12 42 42 H 1.07993 * 119.94942 * 180.27551 * 15 14 13 43 43 H 0.96992 * 120.00375 * 179.97438 * 21 20 18 44 44 H 1.07996 * 119.95033 * 179.97438 * 26 16 15 45 45 H 1.07994 * 120.05380 * 180.02562 * 27 26 16 46 46 H 1.09007 * 109.58496 * 293.81629 * 28 8 7 47 47 H 1.09001 * 109.70573 * 173.46511 * 28 8 7 48 48 H 1.09002 * 109.49871 * 301.33953 * 29 5 2 49 49 H 1.09005 * 109.49768 * 61.40250 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.0399 -0.7212 -1.2494 6 6 1.5290 -2.1638 -1.2496 7 6 2.0124 -2.8723 -2.5189 8 7 3.4744 -2.7501 -2.6008 9 6 4.2477 -3.8440 -2.7479 10 8 5.4484 -3.7236 -2.9072 11 6 3.6442 -5.1759 -2.7162 12 6 4.4289 -6.2739 -2.7588 13 6 3.8225 -7.6122 -2.7275 14 6 2.4315 -7.7511 -2.6477 15 6 1.8678 -9.0061 -2.6250 16 6 2.6787 -10.1364 -2.6685 17 8 2.1192 -11.3709 -2.6396 18 6 2.9598 -12.4221 -2.5686 19 1 4.0270 -12.2646 -2.6197 20 6 2.4542 -13.7064 -2.4298 21 7 1.1547 -13.8983 -2.3680 22 14 3.6191 -15.1633 -2.3321 23 1 5.0212 -14.6832 -2.4251 24 1 3.4225 -15.8685 -1.0401 25 1 3.3397 -16.0966 -3.4528 26 6 4.0621 -10.0032 -2.7420 27 6 4.6344 -8.7522 -2.7715 28 6 4.0771 -1.4127 -2.5186 29 6 3.5703 -0.7205 -1.2495 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5137 0.8901 33 1 1.7210 -1.5954 1.2327 34 1 1.6764 -0.2071 -2.1391 35 1 1.9126 -2.6857 -0.3728 36 1 0.4393 -2.1639 -1.2257 37 1 1.5573 -2.4070 -3.3932 38 1 1.7355 -3.9259 -2.4798 39 1 2.5709 -5.2812 -2.6588 40 1 5.5023 -6.1685 -2.8166 41 1 1.8017 -6.8745 -2.6094 42 1 0.7948 -9.1142 -2.5680 43 1 0.8011 -14.7963 -2.2713 44 1 4.6875 -10.8830 -2.7752 45 1 5.7079 -8.6498 -2.8289 46 1 3.7903 -0.8283 -3.3930 47 1 5.1628 -1.5007 -2.4781 48 1 3.9337 0.3069 -1.2256 49 1 3.9344 -1.2557 -0.3725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265634108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:45 Heat of formation + Delta-G solvation = -80.379224 kcal Electronic energy + Delta-G solvation = -29067.068512 eV Core-core repulsion = 24959.754954 eV Total energy + Delta-G solvation = -4107.313557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.45698 -39.23697 -38.78939 -36.95834 -36.42909 -33.42314 -33.10888 -32.36608 -31.52277 -30.45177 -30.30533 -28.30883 -26.11294 -25.57093 -23.89704 -23.47096 -22.29323 -21.84366 -20.78326 -19.91073 -18.71037 -18.06335 -17.58687 -17.05941 -16.77683 -15.96885 -15.84644 -15.25951 -15.03336 -14.89619 -14.75600 -14.51097 -14.34357 -14.07439 -13.85073 -13.76937 -13.45310 -13.24682 -13.00116 -12.72202 -12.63691 -12.54059 -12.29600 -12.22923 -11.91132 -11.78579 -11.72782 -11.54018 -11.30860 -11.15999 -11.08550 -11.04540 -10.72382 -10.62010 -10.54181 -10.20051 -9.68544 -9.61385 -9.51329 -8.91200 -8.71571 -8.40404 -7.13138 -6.66984 -4.21735 1.05596 2.11402 2.53696 2.95645 3.02417 3.03772 3.09465 3.53933 3.80774 3.95130 4.21835 4.29712 4.38491 4.49265 4.65922 4.74011 4.84560 4.86556 4.90644 4.98850 5.01515 5.03072 5.15487 5.17493 5.28315 5.39436 5.42614 5.47190 5.49798 5.52328 5.59116 5.61385 5.65778 5.67316 5.76467 5.83852 5.99488 6.04207 6.10573 6.32394 6.44677 6.54358 6.59871 6.77245 6.90335 7.11144 7.21721 7.25889 7.26874 7.42042 7.61847 7.78551 8.29957 8.78001 9.44791 10.49704 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.001800 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.743892 B =15554.437713 C =16479.199866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H 0.097 0.903 4 O -0.562 6.562 5 C -0.120 4.120 6 C -0.138 4.138 7 C 0.108 3.892 8 N -0.615 5.615 9 C 0.559 3.441 10 O -0.559 6.559 11 C -0.286 4.286 12 C 0.039 3.961 13 C -0.198 4.198 14 C -0.043 4.043 15 C -0.199 4.199 16 C 0.167 3.833 17 O -0.162 6.162 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.041 3.959 21 N -0.852 5.852 22 Si 0.945 3.055 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.242 4.242 27 C -0.035 4.035 28 C 0.112 3.888 29 C -0.124 4.124 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.374 0.626 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.274 0.726 44 H 0.131 0.869 45 H 0.114 0.886 46 H 0.061 0.939 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 23.862 1.860 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.047 3.953 3 H 0.114 0.886 4 O -0.368 6.368 5 C -0.138 4.138 6 C -0.176 4.176 7 C -0.015 4.015 8 N -0.348 5.348 9 C 0.353 3.647 10 O -0.440 6.440 11 C -0.307 4.307 12 C 0.019 3.981 13 C -0.200 4.200 14 C -0.061 4.061 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.063 6.063 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.484 5.484 22 Si 0.769 3.231 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.261 4.261 27 C -0.053 4.053 28 C -0.010 4.010 29 C -0.162 4.162 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.222 0.778 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.149 0.851 45 H 0.132 0.868 46 H 0.079 0.921 47 H 0.109 0.891 48 H 0.091 0.909 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.667 24.191 1.899 24.275 hybrid contribution 0.079 -1.194 -0.143 1.205 sum -0.588 22.997 1.756 23.072 Atomic orbital electron populations 1.22567 0.96500 1.02861 1.02684 1.21923 0.92718 0.96318 0.84292 0.88557 1.86579 1.77210 1.29232 1.43786 1.21858 0.96396 0.96465 0.99117 1.22076 1.01054 0.95514 0.98980 1.21756 0.80011 1.02287 0.97407 1.47904 1.06720 1.06410 1.73790 1.18413 0.86045 0.84959 0.75326 1.90762 1.15103 1.87162 1.50930 1.22520 1.00262 0.91191 1.16686 1.22304 0.99295 0.90947 0.85538 1.18458 0.93308 0.91804 1.16383 1.20847 0.93576 0.95884 0.95804 1.20142 0.99404 0.90279 1.12032 1.19611 0.91476 0.86555 0.91317 1.83903 1.35856 1.10568 1.75998 1.21528 0.90067 0.83293 1.51927 0.88467 1.25401 0.96912 0.98218 0.95974 1.70016 1.11452 1.23206 1.43766 0.85579 0.79343 0.79694 0.78481 1.18847 1.19906 1.19912 1.21104 0.94868 0.97875 1.12264 1.20992 0.98417 0.91544 0.94343 1.21519 0.99844 0.82582 0.97083 1.21886 0.94677 1.01004 0.98671 0.91810 0.91576 0.91909 0.77790 0.90217 0.91095 0.90243 0.91535 0.88827 0.85656 0.85989 0.86580 0.86133 0.91633 0.85105 0.86804 0.92056 0.89050 0.90950 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.91 9.18 37.16 0.34 -0.57 16 2 C 0.11 0.64 3.39 -26.73 -0.09 0.55 16 3 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 4 O -0.56 -4.46 12.65 -35.23 -0.45 -4.90 16 5 C -0.12 -0.72 2.04 -90.58 -0.18 -0.90 16 6 C -0.14 -0.84 4.70 -26.61 -0.13 -0.96 16 7 C 0.11 0.85 6.35 -3.71 -0.02 0.82 16 8 N -0.61 -6.70 2.97 -174.46 -0.52 -7.21 16 9 C 0.56 8.05 7.61 -13.04 -0.10 7.95 16 10 O -0.56 -9.97 15.68 5.17 0.08 -9.89 16 11 C -0.29 -3.92 8.74 -37.50 -0.33 -4.24 16 12 C 0.04 0.59 9.45 -37.19 -0.35 0.24 16 13 C -0.20 -3.34 5.87 -105.03 -0.62 -3.96 16 14 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 15 C -0.20 -3.91 9.97 -39.46 -0.39 -4.30 16 16 C 0.17 3.79 6.66 -38.88 -0.26 3.53 16 17 O -0.16 -4.36 9.74 0.74 0.01 -4.36 16 18 C -0.39 -10.36 9.48 30.91 0.29 -10.06 16 19 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.85 -23.67 13.67 55.48 0.76 -22.91 16 22 Si 0.94 19.42 29.55 -169.99 -5.02 14.40 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.24 -4.96 9.14 -39.47 -0.36 -5.32 16 27 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 28 C 0.11 1.08 6.41 -3.72 -0.02 1.05 16 29 C -0.12 -0.96 5.19 -26.61 -0.14 -1.10 16 30 H 0.06 0.28 6.40 -51.93 -0.33 -0.05 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.37 2.13 7.37 45.56 0.34 2.47 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.48 6.85 -51.92 -0.36 0.12 16 36 H 0.08 0.36 6.36 -51.93 -0.33 0.03 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.72 5.30 -51.93 -0.28 0.45 16 39 H 0.13 1.46 3.85 -52.49 -0.20 1.25 16 40 H 0.12 1.86 7.53 -52.48 -0.40 1.47 16 41 H 0.12 1.55 6.16 -52.49 -0.32 1.23 16 42 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 45 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 47 H 0.09 1.05 7.04 -51.93 -0.37 0.68 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.71 7.73 -51.93 -0.40 0.31 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -31.59 391.27 -8.60 -40.19 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.15 Total: 7.17 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -3.21 Total: -18.39 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.24 Total: -30.13 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.36 Total: -19.15 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.59 -8.60 -40.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265634108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.188 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds