Wall clock time and date at job start Wed Apr 1 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46959 * 2 1 4 4 O 1.42897 * 109.47267 * 120.00842 * 2 1 3 5 5 C 1.53004 * 109.46763 * 240.00527 * 2 1 3 6 6 C 1.53044 * 109.46034 * 300.02784 * 5 2 1 7 7 C 1.53190 * 109.31322 * 178.60119 * 6 5 2 8 8 N 1.46934 * 108.76522 * 54.65297 * 7 6 5 9 9 C 1.34778 * 120.62951 * 126.35879 * 8 7 6 10 10 O 1.21723 * 120.00027 * 174.92389 * 9 8 7 11 11 C 1.46258 * 120.00151 * 354.92723 * 9 8 7 12 12 C 1.35020 * 120.00079 * 185.16304 * 11 9 8 13 13 C 1.46961 * 120.00138 * 180.02562 * 12 11 9 14 14 C 1.40023 * 120.09775 * 359.72319 * 13 12 11 15 15 C 1.37599 * 119.89482 * 179.69476 * 14 13 12 16 16 C 1.39181 * 120.10001 * 0.60373 * 15 14 13 17 17 O 1.35568 * 119.89490 * 179.69157 * 16 15 14 18 18 C 1.34784 * 116.99483 * 185.53743 * 17 16 15 19 19 H 1.07995 * 120.00571 * 354.95067 * 18 17 16 20 20 C 1.38720 * 119.99731 * 174.94111 * 18 17 16 21 21 N 1.31506 * 120.00431 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00143 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47175 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47034 * 120.00185 * 22 20 18 25 25 H 1.48495 * 109.47629 * 240.00493 * 22 20 18 26 26 C 1.39175 * 120.20232 * 359.67195 * 16 15 14 27 27 C 1.37596 * 120.10445 * 0.02562 * 26 16 15 28 28 C 1.46920 * 118.73701 * 306.38773 * 8 7 6 29 29 C 1.53037 * 109.46055 * 179.97438 * 5 2 1 30 30 H 1.09006 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47368 * 59.99381 * 1 2 3 32 32 H 1.09002 * 109.46807 * 299.99290 * 1 2 3 33 33 H 0.96698 * 114.00586 * 59.99672 * 4 2 1 34 34 H 1.09000 * 109.45951 * 59.99813 * 5 2 1 35 35 H 1.09009 * 109.49556 * 298.56480 * 6 5 2 36 36 H 1.08995 * 109.50046 * 58.65916 * 6 5 2 37 37 H 1.08995 * 109.60099 * 294.86546 * 7 6 5 38 38 H 1.09005 * 109.70410 * 174.49933 * 7 6 5 39 39 H 1.07999 * 119.99859 * 5.16726 * 11 9 8 40 40 H 1.08008 * 119.99677 * 359.97438 * 12 11 9 41 41 H 1.07998 * 120.05321 * 0.02562 * 14 13 12 42 42 H 1.07993 * 119.94942 * 180.27551 * 15 14 13 43 43 H 0.96992 * 120.00375 * 179.97438 * 21 20 18 44 44 H 1.07996 * 119.95033 * 179.97438 * 26 16 15 45 45 H 1.07994 * 120.05380 * 180.02562 * 27 26 16 46 46 H 1.09007 * 109.58496 * 293.81629 * 28 8 7 47 47 H 1.09001 * 109.70573 * 173.46511 * 28 8 7 48 48 H 1.09002 * 109.49871 * 301.33953 * 29 5 2 49 49 H 1.09005 * 109.49768 * 61.40250 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.0399 -0.7212 -1.2494 6 6 1.5290 -2.1638 -1.2496 7 6 2.0124 -2.8723 -2.5189 8 7 3.4744 -2.7501 -2.6008 9 6 4.2477 -3.8440 -2.7479 10 8 5.4484 -3.7236 -2.9072 11 6 3.6442 -5.1759 -2.7162 12 6 4.4289 -6.2739 -2.7588 13 6 3.8225 -7.6122 -2.7275 14 6 2.4315 -7.7511 -2.6477 15 6 1.8678 -9.0061 -2.6250 16 6 2.6787 -10.1364 -2.6685 17 8 2.1192 -11.3709 -2.6396 18 6 2.9598 -12.4221 -2.5686 19 1 4.0270 -12.2646 -2.6197 20 6 2.4542 -13.7064 -2.4298 21 7 1.1547 -13.8983 -2.3680 22 14 3.6191 -15.1633 -2.3321 23 1 5.0212 -14.6832 -2.4251 24 1 3.4225 -15.8685 -1.0401 25 1 3.3397 -16.0966 -3.4528 26 6 4.0621 -10.0032 -2.7420 27 6 4.6344 -8.7522 -2.7715 28 6 4.0771 -1.4127 -2.5186 29 6 3.5703 -0.7205 -1.2495 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5137 0.8901 33 1 1.7210 -1.5954 1.2327 34 1 1.6764 -0.2071 -2.1391 35 1 1.9126 -2.6857 -0.3728 36 1 0.4393 -2.1639 -1.2257 37 1 1.5573 -2.4070 -3.3932 38 1 1.7355 -3.9259 -2.4798 39 1 2.5709 -5.2812 -2.6588 40 1 5.5023 -6.1685 -2.8166 41 1 1.8017 -6.8745 -2.6094 42 1 0.7948 -9.1142 -2.5680 43 1 0.8011 -14.7963 -2.2713 44 1 4.6875 -10.8830 -2.7752 45 1 5.7079 -8.6498 -2.8289 46 1 3.7903 -0.8283 -3.3930 47 1 5.1628 -1.5007 -2.4781 48 1 3.9337 0.3069 -1.2256 49 1 3.9344 -1.2557 -0.3725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265634108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:44 Heat of formation + Delta-G solvation = -100.347532 kcal Electronic energy + Delta-G solvation = -29067.934403 eV Core-core repulsion = 24959.754954 eV Total energy + Delta-G solvation = -4108.179448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.33738 -40.80850 -39.62451 -38.49761 -37.26250 -34.80654 -34.14721 -33.79604 -32.27287 -31.96097 -30.84859 -29.68882 -27.57251 -26.69159 -24.74633 -24.37639 -23.71614 -22.85287 -21.75357 -20.84663 -20.06923 -19.35318 -18.84094 -18.53303 -17.46078 -16.89793 -16.52228 -16.46654 -16.29985 -16.09182 -15.94536 -15.61231 -15.37547 -15.34853 -14.94607 -14.84622 -14.65799 -14.43178 -14.10694 -13.97644 -13.59436 -13.42233 -13.29962 -13.21738 -12.95445 -12.86898 -12.73301 -12.64302 -12.56214 -12.21741 -12.15264 -12.10762 -11.85039 -11.60218 -11.24605 -11.20813 -11.12904 -10.84513 -10.67865 -10.57945 -9.89245 -9.63089 -8.67582 -8.52461 -6.18279 -0.25665 0.58597 1.12541 1.36001 1.44873 1.53636 2.05984 2.14967 2.34246 2.86017 3.17534 3.42141 3.48847 3.56904 3.70487 3.80705 3.89375 3.93546 4.07423 4.12513 4.19162 4.25848 4.34821 4.36438 4.43683 4.47058 4.51250 4.59232 4.65226 4.75963 4.85838 4.86654 4.91143 4.94958 5.00731 5.03168 5.06787 5.13190 5.19501 5.20987 5.25867 5.34061 5.41624 5.47891 5.56216 5.63529 5.66773 5.80731 5.97502 6.10109 6.43276 6.84606 6.92192 7.20052 7.69181 8.69733 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.001800 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.743892 B =15554.437713 C =16479.199866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.106 3.894 3 H 0.094 0.906 4 O -0.583 6.583 5 C -0.112 4.112 6 C -0.134 4.134 7 C 0.099 3.901 8 N -0.606 5.606 9 C 0.547 3.453 10 O -0.599 6.599 11 C -0.248 4.248 12 C 0.016 3.984 13 C -0.170 4.170 14 C -0.036 4.036 15 C -0.205 4.205 16 C 0.130 3.870 17 O -0.219 6.219 18 C -0.416 4.416 19 H 0.105 0.895 20 C -0.019 4.019 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.252 1.252 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.249 4.249 27 C -0.041 4.041 28 C 0.109 3.891 29 C -0.117 4.117 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.382 0.618 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.155 0.845 40 H 0.121 0.879 41 H 0.160 0.840 42 H 0.125 0.875 43 H 0.275 0.725 44 H 0.124 0.876 45 H 0.142 0.858 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 27.319 1.657 27.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.048 3.952 3 H 0.112 0.888 4 O -0.391 6.391 5 C -0.131 4.131 6 C -0.172 4.172 7 C -0.023 4.023 8 N -0.338 5.338 9 C 0.340 3.660 10 O -0.483 6.483 11 C -0.269 4.269 12 C -0.004 4.004 13 C -0.171 4.171 14 C -0.054 4.054 15 C -0.224 4.224 16 C 0.078 3.922 17 O -0.124 6.124 18 C -0.491 4.491 19 H 0.122 0.878 20 C -0.217 4.217 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.175 1.175 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.268 4.268 27 C -0.059 4.059 28 C -0.013 4.013 29 C -0.155 4.155 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.172 0.828 40 H 0.139 0.861 41 H 0.178 0.822 42 H 0.143 0.857 43 H 0.084 0.916 44 H 0.142 0.858 45 H 0.160 0.840 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.101 0.899 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.852 27.742 1.698 27.807 hybrid contribution 0.218 -1.544 -0.088 1.562 sum -0.634 26.198 1.609 26.255 Atomic orbital electron populations 1.22521 0.95315 1.03381 1.02945 1.21974 0.93582 0.96044 0.83639 0.88764 1.86559 1.77728 1.30035 1.44775 1.21814 0.94743 0.96772 0.99765 1.22071 1.02428 0.95020 0.97699 1.22084 0.77741 1.03235 0.99199 1.48039 1.08105 1.06024 1.71592 1.18608 0.85782 0.86034 0.75549 1.90758 1.16931 1.87786 1.52835 1.22844 1.01521 0.90506 1.11986 1.22179 0.99580 0.90322 0.88303 1.18759 0.93460 0.92377 1.12508 1.21255 0.93972 0.96046 0.94081 1.20423 0.99698 0.90580 1.11699 1.20193 0.92972 0.86441 0.92591 1.83885 1.36781 1.11775 1.79930 1.21924 0.90606 0.83995 1.52617 0.87757 1.26594 0.98657 1.00966 0.95526 1.70143 1.13595 1.23816 1.47413 0.84532 0.77469 0.75673 0.78604 1.17484 1.19325 1.19300 1.21192 0.94163 0.98987 1.12473 1.21304 1.00142 0.90634 0.93824 1.21627 0.98553 0.82258 0.98866 1.21809 0.96193 1.00951 0.96584 0.91122 0.90393 0.92626 0.76901 0.88639 0.91801 0.87885 0.89500 0.88280 0.82794 0.86092 0.82227 0.85705 0.91585 0.85848 0.84013 0.90128 0.91538 0.89916 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 9.18 71.98 0.66 -0.50 16 2 C 0.11 0.97 3.39 30.60 0.10 1.08 16 3 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 4 O -0.58 -8.07 12.65 -148.98 -1.88 -9.96 16 5 C -0.11 -0.93 2.04 -10.77 -0.02 -0.95 16 6 C -0.13 -1.04 4.70 30.67 0.14 -0.90 16 7 C 0.10 1.07 6.35 86.36 0.55 1.62 16 8 N -0.61 -11.18 2.97 -824.09 -2.45 -13.63 16 9 C 0.55 14.21 7.61 86.33 0.66 14.86 16 10 O -0.60 -20.52 15.68 -4.42 -0.07 -20.59 16 11 C -0.25 -5.78 8.74 23.61 0.21 -5.58 16 12 C 0.02 0.44 9.45 23.82 0.23 0.66 16 13 C -0.17 -5.25 5.87 -20.13 -0.12 -5.37 16 14 C -0.04 -1.08 9.40 22.55 0.21 -0.87 16 15 C -0.20 -7.95 9.97 22.35 0.22 -7.73 16 16 C 0.13 6.12 6.66 22.72 0.15 6.27 16 17 O -0.22 -12.53 9.74 -20.27 -0.20 -12.73 16 18 C -0.42 -23.24 9.48 67.94 0.64 -22.60 16 19 H 0.11 5.36 5.18 -2.91 -0.02 5.34 16 20 C -0.02 -1.02 5.49 84.86 0.47 -0.55 16 21 N -0.91 -53.94 13.67 21.62 0.30 -53.65 16 22 Si 1.02 41.37 29.55 68.60 2.03 43.40 16 23 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 24 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 26 C -0.25 -10.39 9.14 22.34 0.20 -10.18 16 27 C -0.04 -1.39 9.78 22.55 0.22 -1.17 16 28 C 0.11 1.82 6.41 86.36 0.55 2.38 16 29 C -0.12 -1.52 5.19 30.67 0.16 -1.36 16 30 H 0.07 0.35 6.40 -2.38 -0.02 0.33 16 31 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.38 3.54 7.37 -74.06 -0.55 2.99 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.62 6.85 -2.38 -0.02 0.61 16 36 H 0.10 0.40 6.36 -2.39 -0.02 0.38 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.10 0.96 5.30 -2.38 -0.01 0.95 16 39 H 0.15 2.66 3.85 -2.91 -0.01 2.65 16 40 H 0.12 3.41 7.53 -2.91 -0.02 3.39 16 41 H 0.16 3.38 6.16 -2.91 -0.02 3.36 16 42 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 43 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.12 5.23 5.62 -2.91 -0.02 5.22 16 45 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 46 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.07 1.47 7.04 -2.39 -0.02 1.45 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.05 0.93 7.73 -2.38 -0.02 0.91 16 Total: -1.00 -74.79 391.27 3.41 -71.39 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.44 Total: 26.67 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 5.24 Total: -30.90 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -2.15 Total: -67.28 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -2.15 Total: -43.28 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -74.79 3.41 -71.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265634108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.961 kcal (2) G-P(sol) polarization free energy of solvation -74.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds