Wall clock time and date at job start Wed Apr 1 2020 04:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21287 * 119.99925 * 2 1 4 4 N 1.34774 * 120.00287 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00217 * 185.02063 * 4 2 1 6 6 H 1.09004 * 109.46827 * 325.38059 * 5 4 2 7 7 C 1.50703 * 109.46876 * 205.38641 * 5 4 2 8 8 O 1.20828 * 119.99783 * 329.81375 * 7 5 4 9 9 O 1.34221 * 119.99859 * 149.81983 * 7 5 4 10 10 C 1.45208 * 116.99984 * 179.97438 * 9 7 5 11 11 C 1.50696 * 109.47206 * 180.02562 * 10 9 7 12 12 C 1.38637 * 119.74466 * 269.72351 * 11 10 9 13 13 C 1.37621 * 120.24470 * 179.71786 * 12 11 10 14 14 C 1.40719 * 119.74565 * 0.57938 * 13 12 11 15 15 C 1.41397 * 120.24367 * 179.67882 * 14 13 12 16 16 H 1.07997 * 119.99555 * 163.77316 * 15 14 13 17 17 C 1.39949 * 119.99852 * 343.77414 * 15 14 13 18 18 N 1.30816 * 120.00197 * 329.71344 * 17 15 14 19 19 Si 1.86796 * 119.99655 * 149.72052 * 17 15 14 20 20 H 1.48502 * 109.47435 * 94.99063 * 19 17 15 21 21 H 1.48498 * 109.47036 * 214.99199 * 19 17 15 22 22 H 1.48506 * 109.47332 * 334.98938 * 19 17 15 23 23 C 1.40715 * 119.51276 * 359.69674 * 14 13 12 24 24 C 1.37617 * 119.74104 * 0.02562 * 23 14 13 25 25 C 1.52989 * 109.47355 * 85.38139 * 5 4 2 26 26 C 1.54267 * 110.03542 * 177.98662 * 25 5 4 27 27 C 1.54888 * 104.19870 * 217.10586 * 26 25 5 28 28 C 1.54895 * 102.74860 * 37.94164 * 27 26 25 29 29 C 1.53881 * 110.03399 * 60.82137 * 25 5 4 30 30 H 1.08996 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47325 * 300.00020 * 1 2 3 32 32 H 1.09003 * 109.46772 * 59.99538 * 1 2 3 33 33 H 0.97002 * 119.99647 * 4.74587 * 4 2 1 34 34 H 1.09007 * 109.46730 * 299.99639 * 10 9 7 35 35 H 1.08995 * 109.46962 * 59.99701 * 10 9 7 36 36 H 1.07997 * 119.87989 * 359.97438 * 12 11 10 37 37 H 1.08000 * 120.12715 * 180.27440 * 13 12 11 38 38 H 0.96998 * 120.00300 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.13127 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.87542 * 180.02562 * 24 23 14 41 41 H 1.09008 * 110.02009 * 299.43327 * 25 5 4 42 42 H 1.08994 * 110.48261 * 335.78527 * 26 25 5 43 43 H 1.08995 * 110.48575 * 98.42599 * 26 25 5 44 44 H 1.08998 * 110.75946 * 279.62828 * 27 26 25 45 45 H 1.09001 * 110.91508 * 156.32798 * 27 26 25 46 46 H 1.08995 * 110.48904 * 203.38175 * 28 27 26 47 47 H 1.08998 * 110.59610 * 80.78935 * 28 27 26 48 48 H 1.09001 * 110.03140 * 238.57550 * 29 25 5 49 49 H 1.08997 * 110.02750 * 359.97438 * 29 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6417 -1.1695 0.1116 6 1 4.0468 -0.2998 -0.4059 7 6 4.1909 -2.4264 -0.5128 8 8 3.5353 -3.4413 -0.5045 9 8 5.4083 -2.4184 -1.0780 10 6 5.8733 -3.6650 -1.6595 11 6 7.2489 -3.4654 -2.2416 12 6 7.3858 -3.0712 -3.5637 13 6 8.6369 -2.8803 -4.1041 14 6 9.7800 -3.0987 -3.3130 15 6 11.0706 -2.9123 -3.8595 16 1 11.9257 -2.8212 -3.2061 17 6 11.2400 -2.8458 -5.2472 18 7 10.4305 -3.5030 -6.0371 19 14 12.6221 -1.8187 -5.9711 20 1 13.8017 -2.6844 -6.2247 21 1 12.1703 -1.2111 -7.2486 22 1 12.9930 -0.7440 -5.0158 23 6 9.6291 -3.5043 -1.9740 24 6 8.3681 -3.6835 -1.4529 25 6 4.0411 -1.1166 1.5874 26 6 5.5770 -1.1694 1.7215 27 6 5.8185 -2.0276 2.9881 28 6 4.7146 -3.1090 2.8838 29 6 3.4928 -2.3499 2.3265 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6984 -2.0058 -0.0686 34 1 5.9140 -4.4332 -0.8872 35 1 5.1870 -3.9770 -2.4466 36 1 6.5072 -2.9092 -4.1705 37 1 8.7412 -2.5688 -5.1330 38 1 10.5477 -3.4567 -6.9989 39 1 10.4995 -3.6751 -1.3580 40 1 8.2497 -3.9943 -0.4254 41 1 3.6567 -0.2052 2.0456 42 1 6.0200 -1.6464 0.8474 43 1 5.9828 -0.1669 1.8569 44 1 5.6895 -1.4297 3.8903 45 1 6.8086 -2.4830 2.9666 46 1 4.4909 -3.5220 3.8674 47 1 5.0169 -3.9008 2.1984 48 1 2.8428 -2.0370 3.1437 49 1 2.9417 -2.9858 1.6337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271834950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:19 Heat of formation + Delta-G solvation = -140.841513 kcal Electronic energy + Delta-G solvation = -30368.055635 eV Core-core repulsion = 26258.120237 eV Total energy + Delta-G solvation = -4109.935399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.22625 -40.57600 -39.52567 -38.89266 -37.60895 -35.77509 -35.61596 -32.76715 -32.08014 -31.22689 -29.96132 -29.50552 -29.06521 -26.94324 -25.40120 -22.98280 -22.71124 -22.15784 -21.83145 -21.46125 -20.30402 -19.31871 -19.04502 -18.34163 -17.91749 -17.44672 -17.19656 -16.57542 -16.52418 -16.40677 -15.87054 -15.68095 -15.44732 -15.29970 -14.72244 -14.48089 -14.36578 -14.25082 -13.88664 -13.87608 -13.71185 -13.35312 -13.26462 -13.09017 -13.06143 -12.84174 -12.44784 -12.43482 -12.30826 -12.16356 -12.06041 -11.99976 -11.85500 -11.69110 -11.56517 -11.44138 -11.31720 -11.28296 -11.06280 -10.91708 -10.33926 -9.50150 -9.39596 -8.84011 -6.37373 0.69878 0.97827 1.11541 1.32647 1.38530 1.51068 1.54211 1.67068 2.15343 2.28388 2.61682 3.45859 3.50052 3.57359 3.70937 3.78059 3.87741 4.06856 4.09145 4.14439 4.22867 4.46123 4.47313 4.49262 4.51149 4.53677 4.57175 4.58187 4.67340 4.74074 4.78472 4.95955 4.99070 5.01264 5.04778 5.07990 5.17502 5.19806 5.27633 5.28577 5.31835 5.38252 5.42322 5.47202 5.61884 5.89046 6.03065 6.14862 6.28964 6.39717 6.59360 6.60927 6.84631 6.96554 7.10926 8.13924 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.002439 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.707296 B =11477.581601 C =12206.061308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.512 3.488 3 O -0.589 6.589 4 N -0.709 5.709 5 C 0.158 3.842 6 H 0.104 0.896 7 C 0.466 3.534 8 O -0.520 6.520 9 O -0.353 6.353 10 C 0.144 3.856 11 C -0.243 4.243 12 C -0.074 4.074 13 C -0.213 4.213 14 C 0.089 3.911 15 C -0.492 4.492 16 H 0.082 0.918 17 C 0.045 3.955 18 N -0.796 5.796 19 Si 0.977 3.023 20 H -0.257 1.257 21 H -0.264 1.264 22 H -0.258 1.258 23 C -0.255 4.255 24 C -0.055 4.055 25 C -0.086 4.086 26 C -0.138 4.138 27 C -0.118 4.118 28 C -0.125 4.125 29 C -0.123 4.123 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.418 0.582 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.295 0.705 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.084 0.916 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.620 3.128 13.149 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.302 3.698 3 O -0.469 6.469 4 N -0.365 5.365 5 C 0.051 3.949 6 H 0.122 0.878 7 C 0.309 3.691 8 O -0.409 6.409 9 O -0.269 6.269 10 C 0.072 3.928 11 C -0.244 4.244 12 C -0.093 4.093 13 C -0.232 4.232 14 C 0.087 3.913 15 C -0.519 4.519 16 H 0.100 0.900 17 C -0.175 4.175 18 N -0.419 5.419 19 Si 0.796 3.204 20 H -0.182 1.182 21 H -0.188 1.188 22 H -0.182 1.182 23 C -0.275 4.275 24 C -0.073 4.073 25 C -0.106 4.106 26 C -0.176 4.176 27 C -0.156 4.156 28 C -0.162 4.162 29 C -0.160 4.160 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.257 0.743 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.135 0.865 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.433 3.431 12.873 21.154 hybrid contribution 0.662 -0.313 -0.918 1.174 sum -15.771 3.117 11.955 20.034 Atomic orbital electron populations 1.21889 0.87087 1.06519 1.06464 1.21731 0.92456 0.82048 0.73565 1.90736 1.71910 1.32784 1.51497 1.46002 1.04860 1.10645 1.74980 1.20487 0.82849 0.93944 0.97648 0.87836 1.23713 0.79977 0.90598 0.74814 1.90591 1.59477 1.34868 1.55982 1.86718 1.32866 1.40811 1.66550 1.21560 0.92366 0.82475 0.96380 1.18873 0.92572 1.18294 0.94685 1.20725 0.96276 0.97557 0.94721 1.21185 0.92189 1.09557 1.00266 1.17988 0.93737 0.87445 0.92157 1.19925 0.94480 1.44889 0.92654 0.90034 1.26867 0.99725 0.93582 0.97285 1.69914 1.36170 1.29011 1.06790 0.85284 0.77792 0.79154 0.78147 1.18152 1.18787 1.18212 1.21057 0.96450 1.13038 0.96907 1.20648 0.91964 0.96860 0.97839 1.22076 0.96752 1.00871 0.90893 1.22633 0.93995 1.01445 0.99497 1.22460 0.98804 0.96838 0.97491 1.22351 0.95119 0.97505 1.01246 1.22288 0.98251 0.95327 1.00162 0.87833 0.87085 0.87752 0.74304 0.90750 0.91504 0.87942 0.88162 0.89411 0.88082 0.86549 0.88660 0.91809 0.90589 0.89893 0.91600 0.89936 0.93515 0.89753 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.39 71.24 0.74 -0.76 16 2 C 0.51 10.11 7.91 87.66 0.69 10.80 16 3 O -0.59 -17.21 16.73 -3.05 -0.05 -17.26 16 4 N -0.71 -13.76 4.50 -446.10 -2.01 -15.77 16 5 C 0.16 3.88 2.32 44.24 0.10 3.98 16 6 H 0.10 2.94 7.50 -2.38 -0.02 2.92 16 7 C 0.47 13.53 5.80 71.24 0.41 13.94 16 8 O -0.52 -15.60 14.43 21.96 0.32 -15.28 16 9 O -0.35 -12.11 8.58 -51.33 -0.44 -12.55 16 10 C 0.14 5.15 5.58 71.23 0.40 5.55 16 11 C -0.24 -10.45 5.54 -19.68 -0.11 -10.56 16 12 C -0.07 -3.49 9.67 22.22 0.21 -3.27 16 13 C -0.21 -11.21 8.81 22.73 0.20 -11.01 16 14 C 0.09 4.81 5.63 -21.29 -0.12 4.69 16 15 C -0.49 -26.10 9.00 23.46 0.21 -25.89 16 16 H 0.08 4.16 8.00 -2.91 -0.02 4.14 16 17 C 0.05 2.22 4.92 85.26 0.42 2.64 16 18 N -0.80 -40.30 11.24 21.83 0.25 -40.05 16 19 Si 0.98 36.74 29.65 68.60 2.03 38.77 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 21 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 23 C -0.26 -12.46 9.80 22.73 0.22 -12.24 16 24 C -0.05 -2.39 9.67 22.22 0.21 -2.18 16 25 C -0.09 -1.84 2.96 -10.07 -0.03 -1.87 16 26 C -0.14 -3.19 6.18 31.67 0.20 -2.99 16 27 C -0.12 -2.31 6.91 31.89 0.22 -2.09 16 28 C -0.12 -2.39 6.83 31.67 0.22 -2.18 16 29 C -0.12 -2.27 5.76 31.32 0.18 -2.09 16 30 H 0.10 0.44 7.92 -2.39 -0.02 0.42 16 31 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.42 6.67 7.54 -92.71 -0.70 5.97 16 34 H 0.07 2.47 8.07 -2.38 -0.02 2.45 16 35 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 36 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 37 H 0.10 5.47 6.05 -2.91 -0.02 5.46 16 38 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 39 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.06 1.81 5.47 -2.39 -0.01 1.79 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 46 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.07 1.39 5.65 -2.39 -0.01 1.38 16 Total: -1.00 -64.59 400.12 4.75 -59.84 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.26 Total: 37.83 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 4.38 Total: -35.53 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -1.76 Total: -55.82 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.17 Total: -45.09 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -64.59 4.75 -59.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271834950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.999 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds