Wall clock time and date at job start Wed Apr 1 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46958 * 2 1 4 4 O 1.42900 * 109.47300 * 239.99525 * 2 1 3 5 5 C 1.52999 * 109.47100 * 119.99385 * 2 1 3 6 6 H 1.08996 * 109.58716 * 301.47096 * 5 2 1 7 7 C 1.53195 * 109.58487 * 61.89835 * 5 2 1 8 8 C 1.53038 * 109.31372 * 174.42241 * 7 5 2 9 9 C 1.53045 * 109.54001 * 298.63397 * 8 7 5 10 10 C 1.53196 * 109.30901 * 61.36143 * 9 8 7 11 11 N 1.46919 * 108.77861 * 305.36771 * 10 9 8 12 12 C 1.34773 * 120.63370 * 233.58725 * 11 10 9 13 13 O 1.21725 * 120.00312 * 185.85131 * 12 11 10 14 14 C 1.46252 * 119.99993 * 5.85728 * 12 11 10 15 15 C 1.35024 * 120.00250 * 174.88922 * 14 12 11 16 16 C 1.46968 * 119.99839 * 179.97438 * 15 14 12 17 17 C 1.40021 * 120.10195 * 359.72719 * 16 15 14 18 18 C 1.37596 * 119.89725 * 179.69605 * 17 16 15 19 19 C 1.39180 * 120.09898 * 0.59750 * 18 17 16 20 20 O 1.35572 * 119.89885 * 179.69653 * 19 18 17 21 21 C 1.34781 * 117.00193 * 185.74824 * 20 19 18 22 22 H 1.08007 * 119.99594 * 5.44189 * 21 20 19 23 23 C 1.38714 * 120.00031 * 185.44401 * 21 20 19 24 24 N 1.31507 * 120.00388 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47255 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47321 * 119.99815 * 25 23 21 28 28 H 1.48504 * 109.47176 * 239.99691 * 25 23 21 29 29 C 1.39177 * 120.20346 * 359.67439 * 19 18 17 30 30 C 1.37597 * 120.10057 * 0.02562 * 29 19 18 31 31 H 1.09009 * 109.46943 * 184.85870 * 1 2 3 32 32 H 1.08998 * 109.47237 * 304.85378 * 1 2 3 33 33 H 1.08996 * 109.47266 * 64.85901 * 1 2 3 34 34 H 0.96702 * 113.99954 * 300.00291 * 4 2 1 35 35 H 1.09007 * 109.49717 * 294.37024 * 7 5 2 36 36 H 1.08995 * 109.49950 * 54.46652 * 7 5 2 37 37 H 1.09004 * 109.46337 * 178.61383 * 8 7 5 38 38 H 1.09001 * 109.45167 * 58.64348 * 8 7 5 39 39 H 1.09003 * 109.49340 * 301.41866 * 9 8 7 40 40 H 1.08991 * 109.52878 * 181.33211 * 9 8 7 41 41 H 1.09000 * 109.58332 * 185.58088 * 10 9 8 42 42 H 1.08999 * 109.58441 * 65.16153 * 10 9 8 43 43 H 1.08003 * 119.99916 * 354.88230 * 14 12 11 44 44 H 1.07997 * 120.00277 * 359.97438 * 15 14 12 45 45 H 1.08005 * 120.05003 * 359.97438 * 17 16 15 46 46 H 1.08000 * 119.95454 * 180.32013 * 18 17 16 47 47 H 0.96998 * 120.00425 * 180.02562 * 24 23 21 48 48 H 1.07997 * 119.94670 * 180.02562 * 29 19 18 49 49 H 1.07999 * 120.05018 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2493 6 1 1.6564 -0.2241 2.1403 7 6 1.5702 -2.1791 1.2284 8 6 2.1971 -2.9298 2.4055 9 6 3.7215 -2.9116 2.2707 10 6 4.2157 -1.4619 2.3034 11 7 3.5090 -0.6979 1.2663 12 6 4.1951 0.0112 0.3483 13 8 3.6006 0.7243 -0.4389 14 6 5.6542 -0.0761 0.2978 15 6 6.3345 0.5517 -0.6852 16 6 7.8007 0.4643 -0.7356 17 6 8.4946 -0.2646 0.2379 18 6 9.8669 -0.3488 0.1832 19 6 10.5661 0.2994 -0.8307 20 8 11.9186 0.2189 -0.8773 21 6 12.5443 0.9638 -1.8101 22 1 11.9785 1.6537 -2.4188 23 6 13.9147 0.8442 -1.9885 24 7 14.6036 0.0045 -1.2472 25 14 14.7817 1.8761 -3.2819 26 1 13.7894 2.7350 -3.9769 27 1 15.8054 2.7308 -2.6288 28 1 15.4395 0.9825 -4.2689 29 6 9.8810 1.0299 -1.7973 30 6 8.5083 1.1145 -1.7540 31 1 -0.3633 -1.0241 0.0870 32 1 -0.3633 0.5873 0.8433 33 1 -0.3633 0.4366 -0.9303 34 1 1.7210 -1.5953 -1.2328 35 1 0.4839 -2.2125 1.3127 36 1 1.8776 -2.6470 0.2932 37 1 1.8451 -3.9614 2.4073 38 1 1.9094 -2.4463 3.3390 39 1 4.0087 -3.3726 1.3256 40 1 4.1669 -3.4665 3.0963 41 1 5.2879 -1.4369 2.1088 42 1 4.0095 -1.0276 3.2816 43 1 6.1875 -0.6427 1.0468 44 1 5.8013 1.1180 -1.4344 45 1 7.9532 -0.7638 1.0280 46 1 10.4027 -0.9151 0.9306 47 1 15.5619 -0.0789 -1.3717 48 1 10.4276 1.5309 -2.5824 49 1 7.9775 1.6811 -2.5047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272200754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:20 Heat of formation + Delta-G solvation = -58.256728 kcal Electronic energy + Delta-G solvation = -29793.153184 eV Core-core repulsion = 25686.798930 eV Total energy + Delta-G solvation = -4106.354254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.75210 -39.16393 -37.72316 -36.81342 -36.70617 -33.29053 -32.90626 -32.37001 -32.02277 -30.40383 -29.54330 -28.29299 -25.90844 -25.37225 -24.47625 -23.09892 -22.11435 -21.53886 -21.11428 -19.84534 -18.66537 -17.96441 -17.34708 -16.99197 -16.52262 -15.93655 -15.52653 -15.10253 -14.99890 -14.79838 -14.60917 -14.44619 -14.11581 -13.85109 -13.80357 -13.76503 -13.44423 -13.07925 -12.97165 -12.81823 -12.54268 -12.46839 -12.13572 -11.91799 -11.76787 -11.71096 -11.65937 -11.37865 -11.16846 -11.13843 -11.12019 -11.00404 -10.84406 -10.57607 -10.49716 -9.92713 -9.55795 -9.46969 -8.85266 -8.83184 -8.59745 -8.35657 -7.07684 -6.63549 -4.18330 1.15102 2.15614 2.62009 2.95740 3.05207 3.05857 3.11626 3.66593 3.83688 4.24754 4.39977 4.49013 4.52599 4.54563 4.73695 4.80033 4.93830 4.96448 4.97868 5.03559 5.04097 5.16940 5.21343 5.24390 5.37717 5.43986 5.48326 5.54334 5.55824 5.59218 5.66378 5.69798 5.72633 5.75009 5.89043 5.98041 6.04607 6.14150 6.17903 6.46234 6.50204 6.61436 6.66899 6.82649 6.94971 7.15574 7.26601 7.31007 7.53223 7.66665 7.75741 7.82080 8.50104 8.81618 9.49140 10.53341 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.001925 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.409481 B =14541.811350 C =15439.500811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.106 3.894 3 H 0.132 0.868 4 O -0.534 6.534 5 C 0.117 3.883 6 H 0.074 0.926 7 C -0.137 4.137 8 C -0.117 4.117 9 C -0.137 4.137 10 C 0.107 3.893 11 N -0.612 5.612 12 C 0.560 3.440 13 O -0.526 6.526 14 C -0.282 4.282 15 C 0.035 3.965 16 C -0.196 4.196 17 C -0.044 4.044 18 C -0.200 4.200 19 C 0.166 3.834 20 O -0.164 6.164 21 C -0.392 4.392 22 H 0.097 0.903 23 C 0.041 3.959 24 N -0.853 5.853 25 Si 0.944 3.056 26 H -0.265 1.265 27 H -0.274 1.274 28 H -0.274 1.274 29 C -0.241 4.241 30 C -0.036 4.036 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.351 0.649 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.273 0.727 48 H 0.131 0.869 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.997 -4.417 7.019 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.047 3.953 3 H 0.149 0.851 4 O -0.337 6.337 5 C 0.013 3.987 6 H 0.092 0.908 7 C -0.175 4.175 8 C -0.155 4.155 9 C -0.176 4.176 10 C -0.016 4.016 11 N -0.346 5.346 12 C 0.354 3.646 13 O -0.406 6.406 14 C -0.303 4.303 15 C 0.016 3.984 16 C -0.197 4.197 17 C -0.062 4.062 18 C -0.219 4.219 19 C 0.110 3.890 20 O -0.065 6.065 21 C -0.467 4.467 22 H 0.114 0.886 23 C -0.165 4.165 24 N -0.486 5.486 25 Si 0.768 3.232 26 H -0.189 1.189 27 H -0.199 1.199 28 H -0.199 1.199 29 C -0.260 4.260 30 C -0.054 4.054 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.196 0.804 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.138 0.862 47 H 0.083 0.917 48 H 0.149 0.851 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.570 -3.650 6.652 24.761 hybrid contribution 0.163 -0.283 -0.294 0.440 sum -23.407 -3.933 6.359 24.572 Atomic orbital electron populations 1.22721 0.97746 1.01980 1.02690 1.22366 0.90478 0.99538 0.82942 0.85092 1.86930 1.76393 1.26996 1.43394 1.21924 0.80686 0.96091 1.00003 0.90839 1.22031 1.00447 0.95470 0.99579 1.21479 0.95463 1.00355 0.98163 1.21941 0.95992 0.96725 1.02898 1.21782 0.97926 0.90974 0.90946 1.47828 1.05332 1.50140 1.31347 1.18310 0.88008 0.79025 0.79268 1.90767 1.69379 1.39752 1.40659 1.22596 0.92483 1.10583 1.04628 1.22275 0.92292 0.89983 0.93899 1.18483 0.91651 1.08677 1.00851 1.20851 0.92964 0.95905 0.96515 1.20136 0.93457 1.07363 1.00924 1.19623 0.84641 0.92094 0.92662 1.83921 1.13267 1.58373 1.50929 1.21507 0.90942 1.18974 1.15314 0.88554 1.25391 0.95562 0.97327 0.98247 1.70019 1.08252 1.33287 1.37009 0.85589 0.79370 0.78962 0.79231 1.18863 1.19936 1.19939 1.21109 0.94298 1.07769 1.02872 1.20991 0.93522 0.95305 0.95620 0.92697 0.91967 0.91644 0.80392 0.90733 0.91328 0.91710 0.91865 0.91242 0.90730 0.88921 0.91770 0.85996 0.85963 0.86614 0.86182 0.91684 0.85146 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 9.35 37.16 0.35 -1.18 16 2 C 0.11 1.14 2.50 -26.73 -0.07 1.08 16 3 H 0.13 1.81 5.98 -52.05 -0.31 1.50 16 4 O -0.53 -6.88 10.86 -59.73 -0.65 -7.53 16 5 C 0.12 1.07 2.79 -67.60 -0.19 0.88 16 6 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 7 C -0.14 -0.95 4.70 -26.61 -0.13 -1.07 16 8 C -0.12 -0.73 5.88 -26.69 -0.16 -0.88 16 9 C -0.14 -0.96 6.08 -26.61 -0.16 -1.12 16 10 C 0.11 0.90 6.35 -3.71 -0.02 0.88 16 11 N -0.61 -6.67 2.97 -166.91 -0.50 -7.17 16 12 C 0.56 8.00 7.07 -13.04 -0.09 7.91 16 13 O -0.53 -8.90 10.90 -19.33 -0.21 -9.11 16 14 C -0.28 -4.00 8.75 -37.51 -0.33 -4.32 16 15 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 16 C -0.20 -3.40 5.87 -105.02 -0.62 -4.02 16 17 C -0.04 -0.76 9.40 -39.15 -0.37 -1.13 16 18 C -0.20 -4.02 9.97 -39.47 -0.39 -4.41 16 19 C 0.17 3.85 6.66 -38.88 -0.26 3.59 16 20 O -0.16 -4.47 9.74 0.74 0.01 -4.46 16 21 C -0.39 -10.48 9.44 30.91 0.29 -10.19 16 22 H 0.10 2.38 5.28 -52.48 -0.28 2.10 16 23 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 24 N -0.85 -23.98 13.67 55.48 0.76 -23.22 16 25 Si 0.94 19.68 29.55 -169.99 -5.02 14.65 16 26 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 28 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 29 C -0.24 -5.06 9.11 -39.47 -0.36 -5.42 16 30 C -0.04 -0.66 9.78 -39.15 -0.38 -1.04 16 31 H 0.05 0.35 6.37 -51.92 -0.33 0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.35 3.36 7.17 45.56 0.33 3.68 16 35 H 0.07 0.42 6.68 -51.92 -0.35 0.07 16 36 H 0.07 0.52 6.49 -51.93 -0.34 0.18 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.79 5.30 -51.93 -0.28 0.52 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.12 1.51 3.85 -52.48 -0.20 1.30 16 44 H 0.12 1.94 7.53 -52.49 -0.40 1.55 16 45 H 0.12 1.63 6.16 -52.48 -0.32 1.30 16 46 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.13 2.72 5.69 -52.49 -0.30 2.42 16 49 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -31.37 383.71 -9.29 -40.66 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.13 Total: 9.65 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -3.33 Total: -19.27 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.26 Total: -30.39 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.85 Total: -21.10 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.37 -9.29 -40.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272200754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.593 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds