Wall clock time and date at job start Wed Apr 1 2020 03:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46958 * 2 1 4 4 O 1.42900 * 109.47300 * 239.99525 * 2 1 3 5 5 C 1.52999 * 109.47100 * 119.99385 * 2 1 3 6 6 H 1.08996 * 109.58716 * 301.47096 * 5 2 1 7 7 C 1.53195 * 109.58487 * 61.89835 * 5 2 1 8 8 C 1.53038 * 109.31372 * 174.42241 * 7 5 2 9 9 C 1.53045 * 109.54001 * 298.63397 * 8 7 5 10 10 C 1.53196 * 109.30901 * 61.36143 * 9 8 7 11 11 N 1.46919 * 108.77861 * 305.36771 * 10 9 8 12 12 C 1.34773 * 120.63370 * 233.58725 * 11 10 9 13 13 O 1.21725 * 120.00312 * 185.85131 * 12 11 10 14 14 C 1.46252 * 119.99993 * 5.85728 * 12 11 10 15 15 C 1.35024 * 120.00250 * 174.88922 * 14 12 11 16 16 C 1.46968 * 119.99839 * 179.97438 * 15 14 12 17 17 C 1.40021 * 120.10195 * 359.72719 * 16 15 14 18 18 C 1.37596 * 119.89725 * 179.69605 * 17 16 15 19 19 C 1.39180 * 120.09898 * 0.59750 * 18 17 16 20 20 O 1.35572 * 119.89885 * 179.69653 * 19 18 17 21 21 C 1.34781 * 117.00193 * 185.74824 * 20 19 18 22 22 H 1.08007 * 119.99594 * 5.44189 * 21 20 19 23 23 C 1.38714 * 120.00031 * 185.44401 * 21 20 19 24 24 N 1.31507 * 120.00388 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99918 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47255 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47321 * 119.99815 * 25 23 21 28 28 H 1.48504 * 109.47176 * 239.99691 * 25 23 21 29 29 C 1.39177 * 120.20346 * 359.67439 * 19 18 17 30 30 C 1.37597 * 120.10057 * 0.02562 * 29 19 18 31 31 H 1.09009 * 109.46943 * 184.85870 * 1 2 3 32 32 H 1.08998 * 109.47237 * 304.85378 * 1 2 3 33 33 H 1.08996 * 109.47266 * 64.85901 * 1 2 3 34 34 H 0.96702 * 113.99954 * 300.00291 * 4 2 1 35 35 H 1.09007 * 109.49717 * 294.37024 * 7 5 2 36 36 H 1.08995 * 109.49950 * 54.46652 * 7 5 2 37 37 H 1.09004 * 109.46337 * 178.61383 * 8 7 5 38 38 H 1.09001 * 109.45167 * 58.64348 * 8 7 5 39 39 H 1.09003 * 109.49340 * 301.41866 * 9 8 7 40 40 H 1.08991 * 109.52878 * 181.33211 * 9 8 7 41 41 H 1.09000 * 109.58332 * 185.58088 * 10 9 8 42 42 H 1.08999 * 109.58441 * 65.16153 * 10 9 8 43 43 H 1.08003 * 119.99916 * 354.88230 * 14 12 11 44 44 H 1.07997 * 120.00277 * 359.97438 * 15 14 12 45 45 H 1.08005 * 120.05003 * 359.97438 * 17 16 15 46 46 H 1.08000 * 119.95454 * 180.32013 * 18 17 16 47 47 H 0.96998 * 120.00425 * 180.02562 * 24 23 21 48 48 H 1.07997 * 119.94670 * 180.02562 * 29 19 18 49 49 H 1.07999 * 120.05018 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2493 6 1 1.6564 -0.2241 2.1403 7 6 1.5702 -2.1791 1.2284 8 6 2.1971 -2.9298 2.4055 9 6 3.7215 -2.9116 2.2707 10 6 4.2157 -1.4619 2.3034 11 7 3.5090 -0.6979 1.2663 12 6 4.1951 0.0112 0.3483 13 8 3.6006 0.7243 -0.4389 14 6 5.6542 -0.0761 0.2978 15 6 6.3345 0.5517 -0.6852 16 6 7.8007 0.4643 -0.7356 17 6 8.4946 -0.2646 0.2379 18 6 9.8669 -0.3488 0.1832 19 6 10.5661 0.2994 -0.8307 20 8 11.9186 0.2189 -0.8773 21 6 12.5443 0.9638 -1.8101 22 1 11.9785 1.6537 -2.4188 23 6 13.9147 0.8442 -1.9885 24 7 14.6036 0.0045 -1.2472 25 14 14.7817 1.8761 -3.2819 26 1 13.7894 2.7350 -3.9769 27 1 15.8054 2.7308 -2.6288 28 1 15.4395 0.9825 -4.2689 29 6 9.8810 1.0299 -1.7973 30 6 8.5083 1.1145 -1.7540 31 1 -0.3633 -1.0241 0.0870 32 1 -0.3633 0.5873 0.8433 33 1 -0.3633 0.4366 -0.9303 34 1 1.7210 -1.5953 -1.2328 35 1 0.4839 -2.2125 1.3127 36 1 1.8776 -2.6470 0.2932 37 1 1.8451 -3.9614 2.4073 38 1 1.9094 -2.4463 3.3390 39 1 4.0087 -3.3726 1.3256 40 1 4.1669 -3.4665 3.0963 41 1 5.2879 -1.4369 2.1088 42 1 4.0095 -1.0276 3.2816 43 1 6.1875 -0.6427 1.0468 44 1 5.8013 1.1180 -1.4344 45 1 7.9532 -0.7638 1.0280 46 1 10.4027 -0.9151 0.9306 47 1 15.5619 -0.0789 -1.3717 48 1 10.4276 1.5309 -2.5824 49 1 7.9775 1.6811 -2.5047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272200754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:19 Heat of formation + Delta-G solvation = -76.749496 kcal Electronic energy + Delta-G solvation = -29793.955091 eV Core-core repulsion = 25686.798930 eV Total energy + Delta-G solvation = -4107.156160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.65956 -40.82176 -38.86362 -38.26273 -37.54984 -34.74434 -34.09163 -33.65061 -32.93255 -31.96931 -30.21782 -29.71813 -27.56613 -26.46210 -25.16756 -24.35417 -23.63077 -22.37398 -22.15794 -20.92985 -20.08041 -19.31166 -18.79603 -18.33551 -17.44395 -16.80855 -16.57397 -16.36968 -16.28533 -15.94628 -15.86677 -15.60929 -15.35712 -15.26279 -14.90112 -14.69184 -14.50458 -14.45691 -14.06162 -13.93188 -13.58612 -13.52173 -13.30413 -13.23606 -13.05456 -12.81754 -12.71948 -12.55699 -12.33844 -12.22193 -12.10870 -11.95447 -11.92077 -11.68722 -11.43599 -11.24292 -11.08815 -10.72410 -10.54384 -9.89729 -9.88044 -9.47903 -8.66059 -8.52749 -6.18424 -0.20627 0.57765 1.17606 1.35585 1.45295 1.53422 2.08364 2.14924 2.47674 2.86651 3.18633 3.40711 3.47864 3.70608 3.83345 3.86480 3.90584 3.97839 4.07868 4.14357 4.18348 4.26744 4.30898 4.36113 4.37310 4.47693 4.52116 4.62884 4.67333 4.76113 4.84751 4.90608 4.94429 4.99224 5.03095 5.06241 5.17466 5.18505 5.20636 5.25233 5.27953 5.35200 5.38831 5.47552 5.58028 5.63707 5.77403 5.82846 5.97058 6.10059 6.54969 6.91967 7.00242 7.42279 7.69217 8.69743 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.001925 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.409481 B =14541.811350 C =15439.500811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.095 0.905 4 O -0.561 6.561 5 C 0.114 3.886 6 H 0.087 0.913 7 C -0.131 4.131 8 C -0.115 4.115 9 C -0.134 4.134 10 C 0.098 3.902 11 N -0.605 5.605 12 C 0.548 3.452 13 O -0.556 6.556 14 C -0.247 4.247 15 C 0.011 3.989 16 C -0.168 4.168 17 C -0.039 4.039 18 C -0.205 4.205 19 C 0.129 3.871 20 O -0.219 6.219 21 C -0.415 4.415 22 H 0.104 0.896 23 C -0.019 4.019 24 N -0.913 5.913 25 Si 1.018 2.982 26 H -0.252 1.252 27 H -0.268 1.268 28 H -0.268 1.268 29 C -0.247 4.247 30 C -0.043 4.043 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.363 0.637 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.147 0.853 44 H 0.120 0.880 45 H 0.157 0.843 46 H 0.124 0.876 47 H 0.275 0.725 48 H 0.124 0.876 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.836 -5.147 8.342 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.046 3.954 3 H 0.113 0.887 4 O -0.366 6.366 5 C 0.011 3.989 6 H 0.105 0.895 7 C -0.169 4.169 8 C -0.153 4.153 9 C -0.172 4.172 10 C -0.024 4.024 11 N -0.338 5.338 12 C 0.341 3.659 13 O -0.437 6.437 14 C -0.267 4.267 15 C -0.009 4.009 16 C -0.169 4.169 17 C -0.056 4.056 18 C -0.224 4.224 19 C 0.077 3.923 20 O -0.124 6.124 21 C -0.491 4.491 22 H 0.121 0.879 23 C -0.218 4.218 24 N -0.550 5.550 25 Si 0.838 3.162 26 H -0.175 1.175 27 H -0.192 1.192 28 H -0.193 1.193 29 C -0.267 4.267 30 C -0.061 4.061 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.210 0.790 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.175 0.825 46 H 0.142 0.858 47 H 0.084 0.916 48 H 0.142 0.858 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.502 -4.400 8.010 28.981 hybrid contribution 0.703 -0.134 -0.509 0.878 sum -26.798 -4.534 7.501 28.195 Atomic orbital electron populations 1.22604 0.95409 1.03438 1.02723 1.22219 0.92235 0.97762 0.83205 0.88718 1.86883 1.77115 1.28118 1.44521 1.22069 0.79494 0.97769 0.99541 0.89484 1.22007 1.01677 0.93492 0.99723 1.21494 0.94644 1.01062 0.98085 1.21927 0.96822 0.95529 1.02971 1.22047 0.97750 0.91799 0.90817 1.47914 1.06360 1.48929 1.30610 1.18421 0.88104 0.79495 0.79899 1.90801 1.69891 1.41023 1.42029 1.22967 0.92974 1.07521 1.03270 1.22120 0.91070 0.92275 0.95463 1.18791 0.92655 1.06010 0.99408 1.21232 0.91790 0.95349 0.97254 1.20409 0.94715 1.06972 1.00284 1.20178 0.84060 0.93674 0.94374 1.83895 1.15102 1.60725 1.52705 1.21904 0.91706 1.19807 1.15655 0.87875 1.26603 0.96041 0.98643 1.00491 1.70148 1.08581 1.36326 1.39958 0.84528 0.78126 0.77298 0.76285 1.17513 1.19249 1.19283 1.21195 0.95496 1.07560 1.02417 1.21292 0.92442 0.95631 0.96691 0.90655 0.90662 0.92731 0.79017 0.88781 0.92073 0.90518 0.90849 0.92521 0.88976 0.88969 0.90010 0.83612 0.86205 0.82545 0.85751 0.91580 0.85835 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.35 71.98 0.67 -1.79 16 2 C 0.10 2.09 2.50 30.59 0.08 2.17 16 3 H 0.10 2.60 5.98 -4.22 -0.03 2.58 16 4 O -0.56 -13.81 10.86 -125.56 -1.36 -15.17 16 5 C 0.11 1.75 2.79 44.97 0.13 1.87 16 6 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 7 C -0.13 -1.31 4.70 30.67 0.14 -1.16 16 8 C -0.12 -0.92 5.88 30.62 0.18 -0.74 16 9 C -0.13 -1.33 6.08 30.67 0.19 -1.15 16 10 C 0.10 1.25 6.35 86.36 0.55 1.80 16 11 N -0.61 -11.33 2.97 -800.19 -2.37 -13.71 16 12 C 0.55 14.39 7.07 86.33 0.61 15.00 16 13 O -0.56 -18.25 10.90 18.99 0.21 -18.04 16 14 C -0.25 -6.20 8.75 23.61 0.21 -5.99 16 15 C 0.01 0.31 9.45 23.82 0.23 0.53 16 16 C -0.17 -5.48 5.87 -20.13 -0.12 -5.59 16 17 C -0.04 -1.24 9.40 22.55 0.21 -1.03 16 18 C -0.20 -8.26 9.97 22.34 0.22 -8.03 16 19 C 0.13 6.24 6.66 22.72 0.15 6.39 16 20 O -0.22 -12.78 9.74 -20.28 -0.20 -12.98 16 21 C -0.41 -23.55 9.44 67.93 0.64 -22.91 16 22 H 0.10 5.39 5.28 -2.91 -0.02 5.38 16 23 C -0.02 -1.06 5.49 84.86 0.47 -0.59 16 24 N -0.91 -54.57 13.67 21.62 0.30 -54.28 16 25 Si 1.02 41.91 29.55 68.60 2.03 43.94 16 26 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 27 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 28 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 29 C -0.25 -10.65 9.11 22.34 0.20 -10.44 16 30 C -0.04 -1.51 9.78 22.55 0.22 -1.29 16 31 H 0.07 0.70 6.37 -2.38 -0.02 0.69 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.36 6.37 7.17 -74.06 -0.53 5.84 16 35 H 0.09 0.61 6.68 -2.38 -0.02 0.60 16 36 H 0.06 0.73 6.49 -2.39 -0.02 0.71 16 37 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 1.17 5.30 -2.39 -0.01 1.15 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.15 2.91 3.85 -2.91 -0.01 2.90 16 44 H 0.12 3.62 7.53 -2.91 -0.02 3.59 16 45 H 0.16 3.70 6.16 -2.91 -0.02 3.68 16 46 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 47 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 48 H 0.12 5.39 5.69 -2.91 -0.02 5.37 16 49 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -74.41 383.71 4.02 -70.39 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.45 Total: 32.80 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 4.98 Total: -32.95 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -2.08 Total: -67.98 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -1.35 Total: -46.19 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -74.41 4.02 -70.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272200754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.359 kcal (2) G-P(sol) polarization free energy of solvation -74.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds