Wall clock time and date at job start Wed Apr 1 2020 04:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46961 * 2 1 4 4 C 1.42903 * 113.99647 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.87017 * 21.77546 * 4 3 2 6 6 C 1.53889 * 113.64118 * 250.48997 * 4 3 2 7 7 C 1.53881 * 87.17952 * 220.40690 * 6 4 3 8 8 H 1.09003 * 113.64463 * 139.51290 * 7 6 4 9 9 N 1.46503 * 113.63676 * 270.49801 * 7 6 4 10 10 C 1.34780 * 120.00016 * 255.49650 * 9 7 6 11 11 O 1.21548 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.47890 * 119.99890 * 180.02562 * 10 9 7 13 13 C 1.39914 * 120.02447 * 359.97438 * 12 10 9 14 14 C 1.38337 * 120.35423 * 180.02562 * 13 12 10 15 15 C 1.37744 * 120.41435 * 359.97438 * 14 13 12 16 16 C 1.40755 * 120.04154 * 359.97438 * 15 14 13 17 17 C 1.41430 * 120.18119 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00031 * 24.36243 * 17 16 15 19 19 C 1.39941 * 120.00524 * 204.36103 * 17 16 15 20 20 N 1.30825 * 119.99600 * 17.74245 * 19 17 16 21 21 Si 1.86803 * 120.00327 * 197.74788 * 19 17 16 22 22 H 1.48500 * 109.47152 * 94.68548 * 21 19 17 23 23 H 1.48495 * 109.47027 * 214.68966 * 21 19 17 24 24 H 1.48505 * 109.46654 * 334.68790 * 21 19 17 25 25 C 1.38997 * 120.01985 * 179.72479 * 12 10 9 26 26 C 1.53194 * 113.71927 * 153.12812 * 4 3 2 27 27 C 1.53854 * 114.62132 * 23.55613 * 26 4 3 28 28 C 1.55439 * 102.04844 * 208.54746 * 27 26 4 29 29 C 1.54994 * 101.01333 * 33.67529 * 28 27 26 30 30 O 1.42620 * 115.41263 * 256.72318 * 26 4 3 31 31 H 1.09003 * 109.47258 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47671 * 300.00262 * 1 2 3 33 33 H 1.09000 * 109.46911 * 60.00499 * 1 2 3 34 34 H 1.08990 * 109.47481 * 239.99256 * 2 1 3 35 35 H 1.09000 * 109.46911 * 119.99501 * 2 1 3 36 36 H 1.08996 * 113.59733 * 105.82849 * 6 4 3 37 37 H 1.09006 * 113.59623 * 334.97944 * 6 4 3 38 38 H 0.96997 * 120.00446 * 75.49853 * 9 7 6 39 39 H 1.07997 * 119.82304 * 0.02562 * 13 12 10 40 40 H 1.08000 * 119.79207 * 179.97438 * 14 13 12 41 41 H 1.07997 * 119.98615 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99909 * 180.02562 * 20 19 17 43 43 H 1.07994 * 120.20481 * 0.02562 * 25 12 10 44 44 H 1.09004 * 110.91858 * 326.73672 * 27 26 4 45 45 H 1.09005 * 110.91692 * 90.36520 * 27 26 4 46 46 H 1.08996 * 111.11683 * 275.73648 * 28 27 26 47 47 H 1.09006 * 111.11288 * 151.60560 * 28 27 26 48 48 H 1.09001 * 110.30045 * 204.94979 * 29 28 27 49 49 H 1.08995 * 110.39119 * 82.83336 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9269 0.5638 -0.3716 6 6 4.0084 1.9784 1.3295 7 6 4.9873 2.8172 0.4894 8 1 5.1496 3.8216 0.8806 9 7 6.2359 2.1197 0.1719 10 6 7.3705 2.4377 0.8261 11 8 7.3581 3.3034 1.6791 12 6 8.6311 1.7339 0.5052 13 6 8.6461 0.7376 -0.4771 14 6 9.8213 0.0746 -0.7823 15 6 10.9898 0.3876 -0.1237 16 6 10.9944 1.3878 0.8667 17 6 12.1926 1.7119 1.5444 18 1 13.1468 1.5142 1.0787 19 6 12.1420 2.2888 2.8184 20 7 11.0445 2.2153 3.5265 21 14 13.6415 3.1639 3.5078 22 1 13.5390 4.6183 3.2258 23 1 13.7096 2.9477 4.9753 24 1 14.8680 2.6212 2.8700 25 6 9.8027 2.0654 1.1755 26 6 3.9467 2.7558 -0.6333 27 6 2.9360 3.9159 -0.6337 28 6 3.3703 4.7242 -1.8883 29 6 3.8542 3.5852 -2.8215 30 8 4.4764 2.6240 -1.9510 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8898 35 1 1.8933 -0.5138 0.8900 36 1 4.4951 1.2057 1.9246 37 1 3.3044 2.5777 1.9070 38 1 6.2460 1.4291 -0.5091 39 1 7.7355 0.4848 -0.9997 40 1 9.8225 -0.6932 -1.5418 41 1 11.9032 -0.1347 -0.3672 42 1 11.0092 2.6154 4.4094 43 1 9.7964 2.8363 1.9318 44 1 1.9172 3.5443 -0.7436 45 1 3.0340 4.5176 0.2699 46 1 4.1838 5.4099 -1.6514 47 1 2.5250 5.2566 -2.3244 48 1 4.5779 3.9677 -3.5413 49 1 3.0083 3.1339 -3.3400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273638228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:11 Heat of formation + Delta-G solvation = -88.507818 kcal Electronic energy + Delta-G solvation = -30596.801509 eV Core-core repulsion = 26489.135469 eV Total energy + Delta-G solvation = -4107.666040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.09505 -38.89093 -37.91629 -37.02136 -35.89246 -33.76138 -32.82456 -32.04227 -31.07024 -29.88957 -29.39805 -27.56520 -25.40951 -24.65790 -23.35778 -23.05145 -22.29960 -21.79426 -20.92623 -19.46752 -19.19681 -17.79389 -17.14146 -16.91089 -16.34976 -15.82682 -15.77956 -15.40489 -15.27863 -14.92186 -14.54898 -14.15299 -13.90775 -13.61961 -13.40664 -13.35440 -13.13120 -12.94702 -12.67678 -12.47787 -12.31853 -12.29158 -12.17910 -11.89681 -11.65276 -11.51294 -11.41510 -11.22922 -11.15535 -11.06784 -10.87772 -10.72897 -10.59974 -10.48133 -10.00057 -9.87887 -9.66571 -9.43744 -9.20540 -9.00762 -8.59306 -7.61062 -7.49917 -6.78471 -4.39599 2.22546 2.82975 3.08779 3.12314 3.17070 3.20498 3.58494 3.84151 3.93174 3.94481 4.24993 4.30788 4.48116 4.62249 4.66797 4.79113 4.82135 4.86563 4.91689 5.04980 5.14753 5.19357 5.33428 5.50480 5.53092 5.58615 5.60786 5.63289 5.64457 5.67801 5.74480 5.83386 5.89383 5.92666 6.04632 6.05325 6.14693 6.31562 6.73970 6.75777 6.94103 7.00704 7.03911 7.13316 7.23406 7.40245 7.72811 7.78702 7.95108 8.12919 8.21709 8.52602 8.82076 8.85451 8.97517 10.16294 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.002526 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.710898 B =11084.149420 C =11147.229983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.065 3.935 5 H 0.093 0.907 6 C -0.169 4.169 7 C 0.134 3.866 8 H 0.108 0.892 9 N -0.711 5.711 10 C 0.567 3.433 11 O -0.546 6.546 12 C -0.127 4.127 13 C -0.215 4.215 14 C -0.098 4.098 15 C -0.211 4.211 16 C 0.098 3.902 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.784 5.784 21 Si 0.910 3.090 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.092 4.092 26 C 0.084 3.916 27 C -0.122 4.122 28 C -0.157 4.157 29 C 0.051 3.949 30 O -0.358 6.358 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.403 0.597 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.284 0.716 43 H 0.134 0.866 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.897 -0.023 -7.752 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.006 3.994 5 H 0.111 0.889 6 C -0.208 4.208 7 C 0.026 3.974 8 H 0.126 0.874 9 N -0.364 5.364 10 C 0.358 3.642 11 O -0.424 6.424 12 C -0.130 4.130 13 C -0.235 4.235 14 C -0.116 4.116 15 C -0.231 4.231 16 C 0.095 3.905 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.146 4.146 20 N -0.408 5.408 21 Si 0.735 3.265 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.112 4.112 26 C 0.043 3.957 27 C -0.159 4.159 28 C -0.194 4.194 29 C -0.025 4.025 30 O -0.276 6.276 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.240 0.760 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.152 0.848 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.958 0.666 -6.958 20.206 hybrid contribution 0.558 -0.219 0.060 0.602 sum -18.400 0.447 -6.899 19.656 Atomic orbital electron populations 1.21739 0.93861 1.02180 1.02957 1.22513 0.95402 0.84040 1.00230 1.87876 1.20364 1.26266 1.94561 1.24138 0.81162 0.98148 0.95912 0.88890 1.23853 0.98802 1.01247 0.96909 1.21912 0.83757 0.97826 0.93861 0.87405 1.45480 1.07066 1.41545 1.42261 1.18873 0.83551 0.81829 0.79920 1.90687 1.86154 1.32750 1.32807 1.19442 0.92552 1.00060 1.00961 1.20359 0.97077 1.02971 1.03111 1.20433 0.93280 0.98910 0.99021 1.21098 0.96735 1.01491 1.03792 1.17604 0.92968 0.89172 0.90717 1.19594 0.93785 1.35531 0.99991 0.90077 1.25966 0.97543 0.94221 0.96870 1.69794 1.27809 1.32889 1.10290 0.86264 0.81685 0.80364 0.78237 1.19220 1.20213 1.18541 1.21643 0.90642 0.99781 0.99150 1.23909 0.93238 0.95131 0.83458 1.22691 0.99511 0.94613 0.99115 1.23307 1.01958 0.98343 0.95836 1.23414 0.97481 0.88507 0.93126 1.88366 1.63491 1.57450 1.18334 0.91211 0.91879 0.92004 0.93363 0.93242 0.89751 0.88303 0.76028 0.89200 0.88917 0.88636 0.90484 0.84821 0.88741 0.89645 0.90174 0.89870 0.89669 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.49 6.51 37.16 0.24 0.74 16 3 O -0.37 -4.13 8.95 -35.23 -0.32 -4.45 16 4 C 0.06 0.77 4.00 -26.17 -0.10 0.67 16 5 H 0.09 1.12 7.90 -51.93 -0.41 0.71 16 6 C -0.17 -2.17 7.51 -25.81 -0.19 -2.37 16 7 C 0.13 1.99 3.78 -67.37 -0.25 1.74 16 8 H 0.11 1.74 7.40 -51.93 -0.38 1.36 16 9 N -0.71 -12.46 5.01 -54.19 -0.27 -12.73 16 10 C 0.57 12.67 7.77 -12.31 -0.10 12.58 16 11 O -0.55 -13.80 15.97 5.32 0.09 -13.71 16 12 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 13 C -0.22 -4.63 9.55 -38.92 -0.37 -5.01 16 14 C -0.10 -2.13 10.01 -39.73 -0.40 -2.53 16 15 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 16 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 17 C -0.46 -12.17 9.05 -37.73 -0.34 -12.52 16 18 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 19 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 20 N -0.78 -20.89 10.95 55.55 0.61 -20.28 16 21 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 25 C -0.09 -2.48 8.24 -38.44 -0.32 -2.80 16 26 C 0.08 1.04 1.51 -89.97 -0.14 0.91 16 27 C -0.12 -1.24 5.97 -24.99 -0.15 -1.39 16 28 C -0.16 -1.43 7.16 -24.38 -0.17 -1.61 16 29 C 0.05 0.52 7.79 38.21 0.30 0.82 16 30 O -0.36 -4.79 10.55 -35.23 -0.37 -5.17 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.40 6.55 6.43 -40.82 -0.26 6.29 16 39 H 0.09 1.65 6.38 -52.49 -0.33 1.31 16 40 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 42 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 43 H 0.13 3.89 5.74 -52.49 -0.30 3.59 16 44 H 0.09 0.93 7.04 -51.93 -0.37 0.57 16 45 H 0.08 0.82 7.85 -51.93 -0.41 0.42 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -30.40 398.44 -10.10 -40.50 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.51 Total: 12.71 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -3.29 Total: -16.78 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.34 Total: -33.01 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.60 Total: -23.32 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.40 -10.10 -40.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273638228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.007 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds