Wall clock time and date at job start Wed Apr 1 2020 04:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46961 * 2 1 4 4 C 1.42903 * 113.99647 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.87017 * 21.77546 * 4 3 2 6 6 C 1.53889 * 113.64118 * 250.48997 * 4 3 2 7 7 C 1.53881 * 87.17952 * 220.40690 * 6 4 3 8 8 H 1.09003 * 113.64463 * 139.51290 * 7 6 4 9 9 N 1.46503 * 113.63676 * 270.49801 * 7 6 4 10 10 C 1.34780 * 120.00016 * 255.49650 * 9 7 6 11 11 O 1.21548 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.47890 * 119.99890 * 180.02562 * 10 9 7 13 13 C 1.39914 * 120.02447 * 359.97438 * 12 10 9 14 14 C 1.38337 * 120.35423 * 180.02562 * 13 12 10 15 15 C 1.37744 * 120.41435 * 359.97438 * 14 13 12 16 16 C 1.40755 * 120.04154 * 359.97438 * 15 14 13 17 17 C 1.41430 * 120.18119 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00031 * 24.36243 * 17 16 15 19 19 C 1.39941 * 120.00524 * 204.36103 * 17 16 15 20 20 N 1.30825 * 119.99600 * 17.74245 * 19 17 16 21 21 Si 1.86803 * 120.00327 * 197.74788 * 19 17 16 22 22 H 1.48500 * 109.47152 * 94.68548 * 21 19 17 23 23 H 1.48495 * 109.47027 * 214.68966 * 21 19 17 24 24 H 1.48505 * 109.46654 * 334.68790 * 21 19 17 25 25 C 1.38997 * 120.01985 * 179.72479 * 12 10 9 26 26 C 1.53194 * 113.71927 * 153.12812 * 4 3 2 27 27 C 1.53854 * 114.62132 * 23.55613 * 26 4 3 28 28 C 1.55439 * 102.04844 * 208.54746 * 27 26 4 29 29 C 1.54994 * 101.01333 * 33.67529 * 28 27 26 30 30 O 1.42620 * 115.41263 * 256.72318 * 26 4 3 31 31 H 1.09003 * 109.47258 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47671 * 300.00262 * 1 2 3 33 33 H 1.09000 * 109.46911 * 60.00499 * 1 2 3 34 34 H 1.08990 * 109.47481 * 239.99256 * 2 1 3 35 35 H 1.09000 * 109.46911 * 119.99501 * 2 1 3 36 36 H 1.08996 * 113.59733 * 105.82849 * 6 4 3 37 37 H 1.09006 * 113.59623 * 334.97944 * 6 4 3 38 38 H 0.96997 * 120.00446 * 75.49853 * 9 7 6 39 39 H 1.07997 * 119.82304 * 0.02562 * 13 12 10 40 40 H 1.08000 * 119.79207 * 179.97438 * 14 13 12 41 41 H 1.07997 * 119.98615 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99909 * 180.02562 * 20 19 17 43 43 H 1.07994 * 120.20481 * 0.02562 * 25 12 10 44 44 H 1.09004 * 110.91858 * 326.73672 * 27 26 4 45 45 H 1.09005 * 110.91692 * 90.36520 * 27 26 4 46 46 H 1.08996 * 111.11683 * 275.73648 * 28 27 26 47 47 H 1.09006 * 111.11288 * 151.60560 * 28 27 26 48 48 H 1.09001 * 110.30045 * 204.94979 * 29 28 27 49 49 H 1.08995 * 110.39119 * 82.83336 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9269 0.5638 -0.3716 6 6 4.0084 1.9784 1.3295 7 6 4.9873 2.8172 0.4894 8 1 5.1496 3.8216 0.8806 9 7 6.2359 2.1197 0.1719 10 6 7.3705 2.4377 0.8261 11 8 7.3581 3.3034 1.6791 12 6 8.6311 1.7339 0.5052 13 6 8.6461 0.7376 -0.4771 14 6 9.8213 0.0746 -0.7823 15 6 10.9898 0.3876 -0.1237 16 6 10.9944 1.3878 0.8667 17 6 12.1926 1.7119 1.5444 18 1 13.1468 1.5142 1.0787 19 6 12.1420 2.2888 2.8184 20 7 11.0445 2.2153 3.5265 21 14 13.6415 3.1639 3.5078 22 1 13.5390 4.6183 3.2258 23 1 13.7096 2.9477 4.9753 24 1 14.8680 2.6212 2.8700 25 6 9.8027 2.0654 1.1755 26 6 3.9467 2.7558 -0.6333 27 6 2.9360 3.9159 -0.6337 28 6 3.3703 4.7242 -1.8883 29 6 3.8542 3.5852 -2.8215 30 8 4.4764 2.6240 -1.9510 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8898 35 1 1.8933 -0.5138 0.8900 36 1 4.4951 1.2057 1.9246 37 1 3.3044 2.5777 1.9070 38 1 6.2460 1.4291 -0.5091 39 1 7.7355 0.4848 -0.9997 40 1 9.8225 -0.6932 -1.5418 41 1 11.9032 -0.1347 -0.3672 42 1 11.0092 2.6154 4.4094 43 1 9.7964 2.8363 1.9318 44 1 1.9172 3.5443 -0.7436 45 1 3.0340 4.5176 0.2699 46 1 4.1838 5.4099 -1.6514 47 1 2.5250 5.2566 -2.3244 48 1 4.5779 3.9677 -3.5413 49 1 3.0083 3.1339 -3.3400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273638228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:10 Heat of formation + Delta-G solvation = -106.655097 kcal Electronic energy + Delta-G solvation = -30597.588434 eV Core-core repulsion = 26489.135469 eV Total energy + Delta-G solvation = -4108.452965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.17191 -40.55047 -38.85075 -38.72240 -37.06423 -35.63774 -34.22586 -32.96422 -32.04739 -31.48936 -31.24970 -28.45337 -27.27650 -25.96197 -24.53050 -23.74813 -23.59405 -22.82784 -22.71079 -21.16180 -20.32855 -19.50652 -18.31084 -18.06314 -17.40520 -17.18683 -17.04908 -16.62610 -16.46490 -16.33634 -16.06111 -15.74136 -15.38150 -15.09084 -14.62257 -14.45883 -14.29121 -14.19617 -14.12261 -13.84130 -13.48560 -13.27068 -13.14519 -13.02361 -12.95030 -12.81787 -12.72501 -12.54869 -12.30319 -12.22163 -12.18887 -12.02487 -11.90222 -11.74825 -11.54873 -11.50012 -11.09132 -10.87360 -10.72288 -10.41687 -10.04143 -9.48557 -9.39867 -8.67178 -6.38716 0.35804 0.99625 1.36084 1.47360 1.51034 2.03937 2.06218 2.18860 2.47652 2.77012 3.01977 3.26767 3.32490 3.61085 3.64986 3.71734 3.81630 3.97812 4.03686 4.12102 4.20509 4.32967 4.38099 4.38538 4.43126 4.51571 4.57638 4.72548 4.76931 4.81326 4.83513 4.85305 4.90381 4.91182 5.00158 5.02563 5.05849 5.08160 5.17779 5.23760 5.29314 5.30467 5.43311 5.51186 5.85310 5.91589 5.99479 6.04447 6.23690 6.27201 6.48917 6.65569 6.87130 6.93624 7.27130 8.29738 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.002526 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.710898 B =11084.149420 C =11147.229983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 O -0.376 6.376 4 C 0.076 3.924 5 H 0.094 0.906 6 C -0.163 4.163 7 C 0.115 3.885 8 H 0.090 0.910 9 N -0.689 5.689 10 C 0.564 3.436 11 O -0.586 6.586 12 C -0.137 4.137 13 C -0.198 4.198 14 C -0.095 4.095 15 C -0.216 4.216 16 C 0.067 3.933 17 C -0.496 4.496 18 H 0.085 0.915 19 C 0.029 3.971 20 N -0.824 5.824 21 Si 0.984 3.016 22 H -0.267 1.267 23 H -0.268 1.268 24 H -0.250 1.250 25 C -0.130 4.130 26 C 0.092 3.908 27 C -0.119 4.119 28 C -0.152 4.152 29 C 0.043 3.957 30 O -0.380 6.380 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.412 0.588 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.110 0.890 42 H 0.287 0.713 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.109 0.891 48 H 0.090 0.910 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.640 -1.006 -9.723 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.295 6.295 4 C 0.017 3.983 5 H 0.112 0.888 6 C -0.202 4.202 7 C 0.009 3.991 8 H 0.108 0.892 9 N -0.341 5.341 10 C 0.355 3.645 11 O -0.467 6.467 12 C -0.141 4.141 13 C -0.218 4.218 14 C -0.113 4.113 15 C -0.236 4.236 16 C 0.065 3.935 17 C -0.525 4.525 18 H 0.103 0.897 19 C -0.186 4.186 20 N -0.450 5.450 21 Si 0.804 3.196 22 H -0.192 1.192 23 H -0.193 1.193 24 H -0.173 1.173 25 C -0.150 4.150 26 C 0.050 3.950 27 C -0.157 4.157 28 C -0.189 4.189 29 C -0.033 4.033 30 O -0.299 6.299 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.250 0.750 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.128 0.872 48 H 0.109 0.891 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.746 -0.350 -8.977 22.607 hybrid contribution 0.929 -0.004 0.523 1.066 sum -19.817 -0.354 -8.453 21.548 Atomic orbital electron populations 1.21739 0.92374 1.03334 1.02882 1.22730 0.96628 0.83050 1.00586 1.87867 1.19426 1.27696 1.94480 1.23910 0.81905 0.97867 0.94621 0.88825 1.23814 0.98268 1.00683 0.97416 1.22181 0.83264 0.97116 0.96576 0.89181 1.45243 1.06734 1.41038 1.41038 1.18748 0.84391 0.81439 0.79957 1.90660 1.86802 1.34535 1.34742 1.19737 0.92497 1.00708 1.01125 1.20803 0.98790 1.00810 1.01350 1.20906 0.92098 0.99205 0.99060 1.21405 0.98476 1.00688 1.02998 1.17959 0.93174 0.90328 0.92077 1.19871 0.94001 1.37638 1.00982 0.89720 1.26876 1.00575 0.94334 0.96851 1.69894 1.30114 1.34219 1.10768 0.85169 0.77967 0.78699 0.77763 1.19205 1.19299 1.17312 1.21448 0.92444 1.00674 1.00473 1.23827 0.92227 0.96321 0.82586 1.22725 0.99174 0.93954 0.99860 1.23310 1.02584 0.97897 0.95115 1.23642 0.98151 0.88449 0.93018 1.88326 1.64351 1.58474 1.18756 0.89485 0.92102 0.91903 0.92805 0.93122 0.90851 0.87019 0.75024 0.85260 0.84409 0.87208 0.90289 0.88199 0.87831 0.89422 0.91161 0.87220 0.89141 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.73 6.51 71.98 0.47 1.20 16 3 O -0.38 -7.49 8.95 -148.98 -1.33 -8.83 16 4 C 0.08 1.67 4.00 30.96 0.12 1.79 16 5 H 0.09 2.05 7.90 -2.39 -0.02 2.04 16 6 C -0.16 -4.08 7.51 31.19 0.23 -3.84 16 7 C 0.11 3.41 3.78 45.35 0.17 3.58 16 8 H 0.09 3.00 7.40 -2.39 -0.02 2.99 16 9 N -0.69 -23.96 5.01 -443.62 -2.22 -26.19 16 10 C 0.56 25.92 7.77 86.80 0.67 26.59 16 11 O -0.59 -31.25 15.97 -3.87 -0.06 -31.32 16 12 C -0.14 -6.74 5.87 -20.13 -0.12 -6.85 16 13 C -0.20 -8.14 9.55 22.70 0.22 -7.93 16 14 C -0.09 -3.87 10.01 22.18 0.22 -3.65 16 15 C -0.22 -10.27 9.78 22.77 0.22 -10.04 16 16 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 17 C -0.50 -27.30 9.05 23.47 0.21 -27.09 16 18 H 0.08 4.40 7.91 -2.91 -0.02 4.37 16 19 C 0.03 1.51 5.14 85.26 0.44 1.95 16 20 N -0.82 -46.53 10.95 21.83 0.24 -46.29 16 21 Si 0.98 40.07 29.60 68.60 2.03 42.10 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 25 C -0.13 -7.37 8.24 23.01 0.19 -7.18 16 26 C 0.09 2.14 1.51 -10.38 -0.02 2.12 16 27 C -0.12 -2.20 5.97 31.72 0.19 -2.01 16 28 C -0.15 -2.43 7.16 32.12 0.23 -2.20 16 29 C 0.04 0.78 7.79 72.66 0.57 1.35 16 30 O -0.38 -9.45 10.55 -148.98 -1.57 -11.02 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.11 2.49 8.14 -2.38 -0.02 2.48 16 38 H 0.41 12.70 6.43 -92.71 -0.60 12.10 16 39 H 0.13 4.25 6.38 -2.91 -0.02 4.24 16 40 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 41 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 42 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 43 H 0.10 6.29 5.74 -2.91 -0.02 6.27 16 44 H 0.10 1.76 7.04 -2.38 -0.02 1.75 16 45 H 0.09 1.58 7.85 -2.38 -0.02 1.56 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -70.11 398.44 2.09 -68.02 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: 0.36 Total: 43.14 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 4.65 Total: -29.62 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.98 Total: -72.48 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -2.97 Total: -51.16 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -70.11 2.09 -68.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273638228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.634 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds