Wall clock time and date at job start Wed Apr 1 2020 04:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47313 * 2 1 4 4 C 1.42901 * 114.00498 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.92952 * 21.84163 * 4 3 2 6 6 C 1.53896 * 113.64333 * 250.49587 * 4 3 2 7 7 C 1.53889 * 87.19196 * 220.52468 * 6 4 3 8 8 H 1.08999 * 113.65090 * 270.37686 * 7 6 4 9 9 N 1.46500 * 113.64300 * 139.46013 * 7 6 4 10 10 C 1.34779 * 119.99465 * 105.96568 * 9 7 6 11 11 O 1.21545 * 120.00045 * 359.97438 * 10 9 7 12 12 C 1.47888 * 120.00000 * 180.02562 * 10 9 7 13 13 C 1.39923 * 120.02434 * 0.02562 * 12 10 9 14 14 C 1.38323 * 120.35871 * 179.97438 * 13 12 10 15 15 C 1.37756 * 120.41308 * 359.70776 * 14 13 12 16 16 C 1.40749 * 120.03480 * 0.56684 * 15 14 13 17 17 C 1.41437 * 120.17341 * 179.71332 * 16 15 14 18 18 H 1.08002 * 119.99746 * 154.54702 * 17 16 15 19 19 C 1.39934 * 120.00410 * 334.54811 * 17 16 15 20 20 N 1.30828 * 119.99868 * 334.27382 * 19 17 16 21 21 Si 1.86795 * 120.00225 * 154.27354 * 19 17 16 22 22 H 1.48506 * 109.47233 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47418 * 300.00113 * 21 19 17 24 24 H 1.48504 * 109.47531 * 59.99950 * 21 19 17 25 25 C 1.38995 * 120.02616 * 179.97438 * 12 10 9 26 26 C 1.53161 * 86.99136 * 24.92360 * 7 6 4 27 27 C 1.53521 * 114.87533 * 218.44976 * 26 7 6 28 28 C 1.54978 * 103.88998 * 231.59026 * 27 26 7 29 29 C 1.55043 * 102.12309 * 20.84640 * 28 27 26 30 30 O 1.43062 * 115.19969 * 91.87867 * 26 7 6 31 31 H 1.09002 * 109.46775 * 299.99902 * 1 2 3 32 32 H 1.08993 * 109.47275 * 59.99726 * 1 2 3 33 33 H 1.09005 * 109.47004 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47287 * 240.00111 * 2 1 3 35 35 H 1.08998 * 109.47650 * 120.00008 * 2 1 3 36 36 H 1.09005 * 113.59553 * 105.95156 * 6 4 3 37 37 H 1.09000 * 113.59766 * 335.10969 * 6 4 3 38 38 H 0.96990 * 120.00678 * 285.96010 * 9 7 6 39 39 H 1.08005 * 119.82057 * 359.95257 * 13 12 10 40 40 H 1.08001 * 119.79673 * 180.02562 * 14 13 12 41 41 H 1.08003 * 119.98255 * 180.30259 * 15 14 13 42 42 H 0.96998 * 119.99669 * 354.26764 * 20 19 17 43 43 H 1.08001 * 120.20332 * 0.02562 * 25 12 10 44 44 H 1.08998 * 110.54588 * 350.18950 * 27 26 7 45 45 H 1.09002 * 110.54102 * 112.99308 * 27 26 7 46 46 H 1.09002 * 110.87133 * 139.00298 * 28 27 26 47 47 H 1.09000 * 110.87220 * 262.48322 * 28 27 26 48 48 H 1.09005 * 110.59117 * 81.88927 * 29 28 27 49 49 H 1.08994 * 110.59422 * 204.82603 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9277 0.5649 -0.3744 6 6 4.0095 1.9779 1.3281 7 6 4.9857 2.8198 0.4876 8 1 5.9163 2.3038 0.2511 9 7 5.2011 4.1698 1.0143 10 6 6.3594 4.4751 1.6321 11 8 7.2249 3.6304 1.7528 12 6 6.5767 5.8377 2.1643 13 6 5.5800 6.8102 2.0271 14 6 5.7757 8.0866 2.5227 15 6 6.9512 8.4138 3.1622 16 6 7.9675 7.4505 3.3045 17 6 9.1779 7.7850 3.9552 18 1 9.7677 7.0137 4.4282 19 6 9.6114 9.1151 3.9861 20 7 9.2332 9.9483 3.0510 21 14 10.7299 9.7012 5.3626 22 1 11.0425 11.1399 5.1678 23 1 10.0470 9.5160 6.6682 24 1 11.9889 8.9140 5.3466 25 6 7.7707 6.1531 2.8021 26 6 3.9461 2.7573 -0.6353 27 6 4.5288 2.6013 -2.0470 28 6 3.8543 3.7382 -2.8558 29 6 3.4105 4.7150 -1.7364 30 8 3.0095 3.8385 -0.6592 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 4.4988 1.2054 1.9215 37 1 3.3053 2.5751 1.9075 38 1 4.5103 4.8438 0.9182 39 1 4.6529 6.5628 1.5312 40 1 5.0001 8.8301 2.4122 41 1 7.0947 9.4112 3.5508 42 1 8.7218 9.6261 2.2923 43 1 8.5427 5.4056 2.9106 44 1 5.6107 2.7332 -2.0310 45 1 4.2672 1.6285 -2.4634 46 1 4.5695 4.2150 -3.5261 47 1 2.9949 3.3627 -3.4111 48 1 4.2429 5.3469 -1.4268 49 1 2.5694 5.3229 -2.0694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273638232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:14 Heat of formation + Delta-G solvation = -111.328375 kcal Electronic energy + Delta-G solvation = -30441.832580 eV Core-core repulsion = 26333.176967 eV Total energy + Delta-G solvation = -4108.655613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.15445 -40.65988 -39.07154 -38.73001 -36.88407 -35.87064 -34.37847 -33.08952 -31.86739 -31.78967 -31.23053 -28.63636 -27.13205 -26.04248 -24.19878 -23.91568 -23.56108 -22.83114 -22.41371 -21.47634 -20.88103 -19.91280 -18.52903 -18.07472 -17.23699 -17.16750 -16.98135 -16.60783 -16.47324 -16.00213 -15.97245 -15.80271 -15.51277 -15.19444 -14.72840 -14.62180 -14.50501 -14.33605 -14.15728 -13.95806 -13.84374 -13.44988 -13.11638 -13.06199 -12.81874 -12.72063 -12.68300 -12.42458 -12.40215 -12.20650 -12.14464 -11.94072 -11.90322 -11.69967 -11.64499 -11.41091 -11.05831 -10.92973 -10.76281 -10.40286 -10.05019 -9.73388 -9.62126 -9.22408 -6.53665 0.18099 0.81938 1.50312 1.57555 1.80060 1.95821 1.99198 2.31641 2.65157 2.70806 2.77330 3.20137 3.42269 3.47224 3.64859 3.68503 3.81691 3.86702 4.04258 4.07817 4.19737 4.21513 4.25945 4.31472 4.37933 4.40496 4.52147 4.66519 4.67593 4.72632 4.77448 4.83453 4.89135 4.89360 4.93619 4.96070 4.99559 5.02858 5.05629 5.14247 5.24215 5.28869 5.37489 5.62060 5.64073 5.70260 5.79036 5.86591 6.11001 6.20285 6.34402 6.49610 6.67690 6.82046 7.14359 7.99317 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.002282 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.198553 B =12267.794908 C =12628.587289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.376 6.376 4 C 0.087 3.913 5 H 0.126 0.874 6 C -0.168 4.168 7 C 0.102 3.898 8 H 0.116 0.884 9 N -0.694 5.694 10 C 0.565 3.435 11 O -0.583 6.583 12 C -0.111 4.111 13 C -0.201 4.201 14 C -0.087 4.087 15 C -0.213 4.213 16 C 0.062 3.938 17 C -0.557 4.557 18 H 0.068 0.932 19 C 0.006 3.994 20 N -0.811 5.811 21 Si 1.117 2.883 22 H -0.267 1.267 23 H -0.263 1.263 24 H -0.261 1.261 25 C -0.185 4.185 26 C 0.087 3.913 27 C -0.141 4.141 28 C -0.146 4.146 29 C 0.031 3.969 30 O -0.351 6.351 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.411 0.589 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.098 0.902 42 H 0.284 0.716 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.055 0.945 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.239 -15.037 -11.444 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.295 6.295 4 C 0.028 3.972 5 H 0.144 0.856 6 C -0.207 4.207 7 C -0.004 4.004 8 H 0.134 0.866 9 N -0.345 5.345 10 C 0.354 3.646 11 O -0.464 6.464 12 C -0.114 4.114 13 C -0.220 4.220 14 C -0.105 4.105 15 C -0.232 4.232 16 C 0.059 3.941 17 C -0.585 4.585 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.434 5.434 21 Si 0.933 3.067 22 H -0.191 1.191 23 H -0.188 1.188 24 H -0.186 1.186 25 C -0.205 4.205 26 C 0.046 3.954 27 C -0.178 4.178 28 C -0.183 4.183 29 C -0.045 4.045 30 O -0.269 6.269 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.250 0.750 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.073 0.927 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.240 -14.081 -10.692 22.702 hybrid contribution -0.468 -1.137 -0.554 1.348 sum -14.709 -15.218 -11.246 23.967 Atomic orbital electron populations 1.21745 0.93174 1.03234 1.02461 1.22776 0.96303 0.83131 1.01005 1.88055 1.19475 1.27571 1.94401 1.23726 0.82374 0.96532 0.94533 0.85615 1.23959 0.98329 1.00056 0.98315 1.22926 0.98263 0.83616 0.95610 0.86620 1.45519 1.17380 1.13765 1.57856 1.18634 0.81625 0.87523 0.76782 1.90650 1.45142 1.50988 1.59654 1.19652 0.96267 0.93017 1.02484 1.20779 0.99047 0.93304 1.08913 1.20934 0.96450 0.96355 0.96772 1.21348 0.94890 0.99831 1.07153 1.17930 0.93816 0.91853 0.90471 1.20752 1.06745 0.97227 1.33806 0.91428 1.28428 0.98452 0.92633 1.01496 1.70586 1.26666 1.39251 1.06924 0.83009 0.74564 0.76837 0.72246 1.19139 1.18774 1.18561 1.21134 0.97371 0.97451 1.04588 1.23546 0.88447 0.88769 0.94669 1.22894 1.00995 1.01543 0.92418 1.23117 1.01660 0.95643 0.97899 1.23891 1.00916 0.93273 0.86384 1.88825 1.48938 1.35107 1.54030 0.92903 0.92292 0.89112 0.91754 0.92842 0.90033 0.89977 0.75044 0.84975 0.84881 0.88363 0.90353 0.89376 0.90228 0.88021 0.89029 0.89334 0.92659 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.13 16 2 C 0.04 0.63 6.51 71.98 0.47 1.10 16 3 O -0.38 -7.96 10.02 -135.71 -1.36 -9.32 16 4 C 0.09 1.68 3.77 31.01 0.12 1.79 16 5 H 0.13 1.68 7.87 -2.39 -0.02 1.66 16 6 C -0.17 -4.02 7.71 31.20 0.24 -3.78 16 7 C 0.10 2.68 3.69 45.35 0.17 2.84 16 8 H 0.12 3.19 7.44 -2.39 -0.02 3.17 16 9 N -0.69 -22.11 5.29 -443.68 -2.35 -24.45 16 10 C 0.56 23.51 7.77 86.80 0.67 24.18 16 11 O -0.58 -27.66 15.95 -3.86 -0.06 -27.72 16 12 C -0.11 -5.08 5.87 -20.13 -0.12 -5.20 16 13 C -0.20 -8.07 9.55 22.70 0.22 -7.86 16 14 C -0.09 -3.69 10.01 22.18 0.22 -3.47 16 15 C -0.21 -10.72 7.95 22.77 0.18 -10.54 16 16 C 0.06 3.40 5.29 -21.32 -0.11 3.29 16 17 C -0.56 -31.02 8.98 23.47 0.21 -30.81 16 18 H 0.07 3.75 7.96 -2.91 -0.02 3.73 16 19 C 0.01 0.33 4.93 85.25 0.42 0.75 16 20 N -0.81 -43.56 12.32 21.82 0.27 -43.30 16 21 Si 1.12 43.60 30.00 68.60 2.06 45.66 16 22 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 25 C -0.18 -9.83 9.34 23.01 0.21 -9.61 16 26 C 0.09 1.85 1.27 -10.46 -0.01 1.84 16 27 C -0.14 -2.29 6.48 31.45 0.20 -2.08 16 28 C -0.15 -2.15 7.16 31.97 0.23 -1.93 16 29 C 0.03 0.59 7.68 72.68 0.56 1.15 16 30 O -0.35 -8.39 9.89 -135.71 -1.34 -9.73 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.41 12.09 5.80 -92.72 -0.54 11.56 16 39 H 0.13 4.25 6.38 -2.91 -0.02 4.23 16 40 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.10 5.12 6.49 -2.91 -0.02 5.10 16 42 H 0.28 15.79 6.71 -92.71 -0.62 15.17 16 43 H 0.09 4.91 7.64 -2.91 -0.02 4.88 16 44 H 0.08 1.37 7.89 -2.39 -0.02 1.35 16 45 H 0.10 1.23 7.94 -2.39 -0.02 1.21 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -68.56 398.78 2.40 -66.16 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: 0.57 Total: 42.17 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 4.62 Total: -39.46 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -2.08 Total: -67.75 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -2.76 Total: -46.77 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.06 Total: 45.66 kcal Total: -68.56 2.40 -66.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273638232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.172 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds