Wall clock time and date at job start Wed Apr 1 2020 04:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47277 * 2 1 4 4 C 1.42907 * 114.00061 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.86860 * 18.72410 * 4 3 2 6 6 C 1.53881 * 113.72546 * 247.36645 * 4 3 2 7 7 C 1.53890 * 87.18192 * 270.48662 * 6 4 3 8 8 H 1.09006 * 113.71881 * 89.51123 * 7 6 4 9 9 N 1.46496 * 113.64095 * 220.49289 * 7 6 4 10 10 C 1.34777 * 120.00019 * 252.31964 * 9 7 6 11 11 O 1.21586 * 119.99818 * 359.97438 * 10 9 7 12 12 C 1.47643 * 120.00034 * 179.72859 * 10 9 7 13 13 C 1.40016 * 119.89418 * 359.97438 * 12 10 9 14 14 C 1.36320 * 120.10568 * 179.72131 * 13 12 10 15 15 C 1.40892 * 119.88823 * 0.55510 * 14 13 12 16 16 C 1.41109 * 120.10065 * 179.70107 * 15 14 13 17 17 H 1.07993 * 119.99719 * 204.65172 * 16 15 14 18 18 C 1.40225 * 120.00118 * 24.65111 * 16 15 14 19 19 N 1.30654 * 119.99982 * 17.88112 * 18 16 15 20 20 Si 1.86795 * 120.00136 * 197.88398 * 18 16 15 21 21 H 1.48506 * 109.47210 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47553 * 120.00052 * 20 18 16 23 23 H 1.48506 * 109.47226 * 240.00050 * 20 18 16 24 24 C 1.40890 * 119.79388 * 359.72067 * 15 14 13 25 25 C 1.36312 * 119.89431 * 359.97438 * 24 15 14 26 26 C 1.53191 * 113.64042 * 149.99890 * 4 3 2 27 27 C 1.53860 * 114.62957 * 333.41147 * 26 4 3 28 28 C 1.55430 * 102.04847 * 208.54952 * 27 26 4 29 29 C 1.54992 * 101.01534 * 33.67504 * 28 27 26 30 30 O 1.42622 * 115.40753 * 206.57892 * 26 4 3 31 31 H 1.08998 * 109.47369 * 59.99735 * 1 2 3 32 32 H 1.09002 * 109.47430 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47030 * 299.99805 * 1 2 3 34 34 H 1.09005 * 109.47495 * 239.99693 * 2 1 3 35 35 H 1.08998 * 109.47369 * 120.00265 * 2 1 3 36 36 H 1.08990 * 113.60034 * 155.91202 * 6 4 3 37 37 H 1.09007 * 113.59373 * 25.05878 * 6 4 3 38 38 H 0.96998 * 119.99686 * 72.32376 * 9 7 6 39 39 H 1.07996 * 119.94362 * 359.97438 * 13 12 10 40 40 H 1.07994 * 120.05381 * 180.27950 * 14 13 12 41 41 H 0.97000 * 119.99535 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.05021 * 180.02562 * 24 15 14 43 43 H 1.07995 * 119.94882 * 179.97438 * 25 24 15 44 44 H 1.08997 * 110.91308 * 326.74203 * 27 26 4 45 45 H 1.08999 * 110.91296 * 90.36101 * 27 26 4 46 46 H 1.09007 * 111.11069 * 275.74272 * 28 27 26 47 47 H 1.09001 * 111.14869 * 151.63028 * 28 27 26 48 48 H 1.09001 * 110.30917 * 204.94457 * 29 28 27 49 49 H 1.09001 * 110.38678 * 82.83615 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9284 0.5453 -0.3215 6 6 4.0048 2.0496 1.3010 7 6 3.8527 3.4358 0.6502 8 1 2.8838 3.9013 0.8311 9 7 4.9763 4.3369 0.9179 10 6 4.8203 5.3764 1.7614 11 8 3.7469 5.5665 2.2999 12 6 5.9544 6.2810 2.0359 13 6 7.1911 6.0566 1.4190 14 6 8.2395 6.8925 1.6649 15 6 8.0803 7.9767 2.5505 16 6 9.1644 8.8410 2.8131 17 1 9.1986 9.3988 3.7372 18 6 10.1971 8.9757 1.8742 19 7 10.0093 8.5979 0.6377 20 14 11.8416 9.6952 2.3913 21 1 11.7981 10.0426 3.8345 22 1 12.9152 8.6972 2.1541 23 1 12.1186 10.9187 1.5964 24 6 6.8355 8.1949 3.1733 25 6 5.7912 7.3574 2.9163 26 6 3.9476 2.7200 -0.7011 27 6 3.0125 3.2777 -1.7882 28 6 4.0145 3.9686 -2.7549 29 6 5.2429 3.0321 -2.6271 30 8 5.2606 2.6204 -1.2490 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 5.0405 1.7668 1.4884 37 1 3.3612 1.9018 2.1683 38 1 5.8325 4.1854 0.4879 39 1 7.3135 5.2224 0.7441 40 1 9.1918 6.7213 1.1851 41 1 10.7238 8.6908 -0.0117 42 1 6.7088 9.0250 3.8525 43 1 4.8368 7.5236 3.3936 44 1 2.4778 2.4726 -2.2920 45 1 2.3153 4.0023 -1.3674 46 1 4.2532 4.9774 -2.4178 47 1 3.6328 3.9784 -3.7758 48 1 6.1574 3.5720 -2.8722 49 1 5.1295 2.1659 -3.2791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274099390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:27 Heat of formation + Delta-G solvation = -106.076649 kcal Electronic energy + Delta-G solvation = -30449.738305 eV Core-core repulsion = 26341.310424 eV Total energy + Delta-G solvation = -4108.427881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.07867 -40.44556 -38.91106 -38.81649 -36.73847 -35.67149 -34.20620 -33.14037 -32.02243 -31.48130 -31.28500 -28.65794 -27.91225 -25.60370 -24.14452 -23.63418 -23.39958 -22.77475 -22.64451 -21.15426 -20.64480 -19.37440 -18.77996 -17.88728 -17.59261 -17.22089 -17.05932 -16.53959 -16.39865 -15.95972 -15.75416 -15.64220 -15.24009 -15.08529 -14.65555 -14.49297 -14.40053 -14.23805 -13.97672 -13.79851 -13.67751 -13.54053 -13.21827 -13.15633 -12.85627 -12.78016 -12.72167 -12.64483 -12.39926 -12.32678 -12.17309 -11.98352 -11.76052 -11.65632 -11.49425 -11.37888 -11.12521 -10.85163 -10.58249 -10.39004 -9.90879 -9.57831 -9.40258 -8.79712 -6.48364 0.43317 1.14473 1.38485 1.42158 1.55543 2.05589 2.12965 2.17885 2.44928 2.77025 2.98210 3.36775 3.43351 3.65110 3.67557 3.77280 3.91083 4.04568 4.14747 4.16172 4.21198 4.30168 4.32348 4.38905 4.42759 4.44773 4.52161 4.74853 4.79036 4.80841 4.87404 4.90664 4.91565 4.94367 5.02447 5.03260 5.05393 5.06934 5.15694 5.20654 5.29640 5.29799 5.55291 5.59794 5.81989 5.91861 5.96405 5.99501 6.21912 6.29357 6.53649 6.73873 6.76869 6.88622 7.44942 8.15805 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002415 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.989717 B =11591.647273 C =12429.805523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.375 6.375 4 C 0.081 3.919 5 H 0.103 0.897 6 C -0.165 4.165 7 C 0.123 3.877 8 H 0.099 0.901 9 N -0.707 5.707 10 C 0.570 3.430 11 O -0.607 6.607 12 C -0.293 4.293 13 C -0.052 4.052 14 C -0.197 4.197 15 C 0.101 3.899 16 C -0.471 4.471 17 H 0.085 0.915 18 C 0.037 3.963 19 N -0.797 5.797 20 Si 0.988 3.012 21 H -0.257 1.257 22 H -0.260 1.260 23 H -0.263 1.263 24 C -0.252 4.252 25 C -0.033 4.033 26 C 0.088 3.912 27 C -0.126 4.126 28 C -0.155 4.155 29 C 0.045 3.955 30 O -0.364 6.364 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.408 0.592 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.297 0.703 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 -16.583 -9.716 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.294 6.294 4 C 0.021 3.979 5 H 0.121 0.879 6 C -0.204 4.204 7 C 0.017 3.983 8 H 0.117 0.883 9 N -0.357 5.357 10 C 0.364 3.636 11 O -0.492 6.492 12 C -0.298 4.298 13 C -0.071 4.071 14 C -0.216 4.216 15 C 0.098 3.902 16 C -0.499 4.499 17 H 0.104 0.896 18 C -0.182 4.182 19 N -0.421 5.421 20 Si 0.808 3.192 21 H -0.181 1.181 22 H -0.184 1.184 23 H -0.188 1.188 24 C -0.272 4.272 25 C -0.052 4.052 26 C 0.046 3.954 27 C -0.164 4.164 28 C -0.193 4.193 29 C -0.030 4.030 30 O -0.283 6.283 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.246 0.754 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.126 0.874 48 H 0.112 0.888 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.812 -16.391 -9.509 20.899 hybrid contribution 0.896 0.496 0.123 1.031 sum -7.917 -15.896 -9.386 20.086 Atomic orbital electron populations 1.21765 0.92824 1.03439 1.02654 1.22797 0.96263 0.82458 1.01202 1.87882 1.18660 1.28449 1.94425 1.22981 0.82190 0.97978 0.94736 0.87885 1.23946 1.02238 0.95717 0.98504 1.22884 0.90980 0.88998 0.95449 0.88342 1.45580 1.15273 1.28064 1.46797 1.18490 0.87298 0.80181 0.77590 1.90600 1.29541 1.75220 1.53867 1.19174 0.94872 1.03746 1.11966 1.20680 0.92032 0.97676 0.96723 1.20998 0.98984 0.96684 1.04917 1.18144 0.91819 0.90857 0.89372 1.20129 1.03718 1.21833 1.04175 0.89641 1.26951 1.03767 0.93872 0.93641 1.69774 1.35179 1.33700 1.03420 0.85057 0.75591 0.78612 0.79941 1.18058 1.18402 1.18794 1.20851 0.93646 1.03206 1.09475 1.20504 0.97321 0.92871 0.94508 1.23244 0.84369 0.94537 0.93232 1.22804 0.97495 1.00744 0.95310 1.23304 0.95388 0.99038 1.01548 1.23720 0.99515 0.98060 0.81746 1.88246 1.26128 1.87150 1.26727 0.91995 0.88951 0.92816 0.91687 0.92694 0.88318 0.90960 0.75400 0.86463 0.86783 0.89162 0.87703 0.87998 0.88398 0.91018 0.92053 0.87431 0.88757 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 2 C 0.05 0.71 6.50 71.98 0.47 1.18 16 3 O -0.37 -7.96 9.46 -148.98 -1.41 -9.37 16 4 C 0.08 1.73 4.10 30.96 0.13 1.85 16 5 H 0.10 1.82 7.87 -2.39 -0.02 1.80 16 6 C -0.16 -4.35 7.71 31.19 0.24 -4.11 16 7 C 0.12 3.82 3.73 45.36 0.17 3.99 16 8 H 0.10 3.54 7.24 -2.38 -0.02 3.53 16 9 N -0.71 -25.45 5.27 -443.83 -2.34 -27.79 16 10 C 0.57 25.62 7.76 86.73 0.67 26.29 16 11 O -0.61 -30.56 15.92 -3.99 -0.06 -30.62 16 12 C -0.29 -14.01 5.89 -19.93 -0.12 -14.13 16 13 C -0.05 -2.39 9.47 22.25 0.21 -2.18 16 14 C -0.20 -9.95 8.64 22.47 0.19 -9.76 16 15 C 0.10 5.37 5.58 -21.28 -0.12 5.25 16 16 C -0.47 -24.09 9.04 23.46 0.21 -23.88 16 17 H 0.09 4.20 7.91 -2.91 -0.02 4.17 16 18 C 0.04 1.72 5.14 85.35 0.44 2.16 16 19 N -0.80 -38.37 10.95 21.87 0.24 -38.13 16 20 Si 0.99 35.02 29.60 68.60 2.03 37.05 16 21 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 22 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 24 C -0.25 -12.84 9.73 22.47 0.22 -12.62 16 25 C -0.03 -1.63 9.52 22.25 0.21 -1.42 16 26 C 0.09 2.11 1.41 -10.37 -0.01 2.10 16 27 C -0.13 -2.65 5.78 31.72 0.18 -2.46 16 28 C -0.16 -2.92 7.16 32.11 0.23 -2.69 16 29 C 0.05 0.83 7.79 72.66 0.57 1.39 16 30 O -0.36 -8.72 10.11 -148.98 -1.51 -10.23 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.41 13.74 5.86 -92.71 -0.54 13.20 16 39 H 0.12 4.58 6.37 -2.91 -0.02 4.56 16 40 H 0.11 5.83 6.15 -2.91 -0.02 5.81 16 41 H 0.30 12.62 8.29 -92.71 -0.77 11.85 16 42 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 43 H 0.10 4.94 7.63 -2.91 -0.02 4.92 16 44 H 0.10 1.71 7.94 -2.39 -0.02 1.69 16 45 H 0.07 1.72 7.78 -2.39 -0.02 1.71 16 46 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -63.85 398.54 2.00 -61.86 By element: Atomic # 1 Polarization: 47.00 SS G_CDS: 0.42 Total: 47.42 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 4.63 Total: -30.17 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -2.10 Total: -65.93 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -2.98 Total: -50.22 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -63.85 2.00 -61.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274099390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.222 kcal (2) G-P(sol) polarization free energy of solvation -63.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds