Wall clock time and date at job start Wed Apr 1 2020 04:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.46918 * 2 1 4 4 C 1.42897 * 113.99668 * 179.97438 * 3 2 1 5 5 H 1.09004 * 112.87117 * 18.72984 * 4 3 2 6 6 C 1.53880 * 113.64407 * 247.32832 * 4 3 2 7 7 C 1.53896 * 87.18046 * 270.49869 * 6 4 3 8 8 H 1.08999 * 113.71985 * 220.47960 * 7 6 4 9 9 N 1.46498 * 113.63928 * 89.50176 * 7 6 4 10 10 C 1.34779 * 120.00014 * 107.68142 * 9 7 6 11 11 O 1.21590 * 119.99720 * 359.97438 * 10 9 7 12 12 C 1.47637 * 120.00265 * 180.27280 * 10 9 7 13 13 C 1.40012 * 119.89200 * 359.45151 * 12 10 9 14 14 C 1.36319 * 120.10459 * 179.72043 * 13 12 10 15 15 C 1.40883 * 119.89267 * 0.57480 * 14 13 12 16 16 C 1.41114 * 120.10618 * 179.72206 * 15 14 13 17 17 H 1.07996 * 119.99704 * 204.61130 * 16 15 14 18 18 C 1.40227 * 119.99908 * 24.61755 * 16 15 14 19 19 N 1.30646 * 119.99736 * 17.88178 * 18 16 15 20 20 Si 1.86794 * 119.99836 * 197.88417 * 18 16 15 21 21 H 1.48501 * 109.47275 * 90.00023 * 20 18 16 22 22 H 1.48500 * 109.47098 * 209.99764 * 20 18 16 23 23 H 1.48495 * 109.47232 * 329.99693 * 20 18 16 24 24 C 1.40891 * 119.79145 * 359.69512 * 15 14 13 25 25 C 1.36315 * 119.89129 * 0.02562 * 24 15 14 26 26 C 1.53199 * 113.63848 * 150.00179 * 4 3 2 27 27 C 1.53856 * 114.61724 * 333.31480 * 26 4 3 28 28 C 1.55439 * 102.04668 * 208.59538 * 27 26 4 29 29 C 1.54995 * 101.01788 * 33.66814 * 28 27 26 30 30 O 1.42629 * 115.39777 * 206.49543 * 26 4 3 31 31 H 1.08999 * 109.47353 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47460 * 299.99880 * 1 2 3 33 33 H 1.09000 * 109.47029 * 59.99872 * 1 2 3 34 34 H 1.09004 * 109.46971 * 240.00050 * 2 1 3 35 35 H 1.09000 * 109.47029 * 120.00128 * 2 1 3 36 36 H 1.08997 * 113.59877 * 155.92904 * 6 4 3 37 37 H 1.09002 * 113.60165 * 25.06918 * 6 4 3 38 38 H 0.96998 * 119.99984 * 287.67768 * 9 7 6 39 39 H 1.08003 * 119.94964 * 359.97438 * 13 12 10 40 40 H 1.08002 * 120.05751 * 180.25350 * 14 13 12 41 41 H 0.97007 * 119.99542 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.05151 * 179.97438 * 24 15 14 43 43 H 1.08007 * 119.94702 * 179.97438 * 25 24 15 44 44 H 1.08992 * 110.91483 * 326.78242 * 27 26 4 45 45 H 1.08993 * 110.91263 * 90.40815 * 27 26 4 46 46 H 1.08997 * 111.11385 * 275.72441 * 28 27 26 47 47 H 1.09003 * 111.14529 * 151.61558 * 28 27 26 48 48 H 1.09001 * 110.30482 * 204.93917 * 29 28 27 49 49 H 1.08995 * 110.31136 * 82.77943 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9284 0.5453 -0.3216 6 6 4.0026 2.0507 1.3014 7 6 3.8504 3.4365 0.6497 8 1 4.6849 4.1088 0.8490 9 7 2.5468 4.0595 0.8918 10 6 2.4463 5.1059 1.7353 11 8 3.4375 5.5325 2.2956 12 6 1.1316 5.7300 1.9840 13 6 -0.0075 5.2404 1.3336 14 6 -1.2244 5.8097 1.5644 15 6 -1.3328 6.9002 2.4498 16 6 -2.5894 7.4968 2.6875 17 1 -2.6459 8.5236 3.0174 18 6 -3.7646 6.7563 2.4955 19 7 -3.7134 5.4519 2.4422 20 14 -5.4032 7.6349 2.3158 21 1 -5.6512 7.9316 0.8820 22 1 -6.4898 6.7671 2.8368 23 1 -5.3713 8.9043 3.0856 24 6 -0.1828 7.3930 3.0975 25 6 1.0289 6.8135 2.8648 26 6 3.9475 2.7202 -0.7011 27 6 3.0133 3.2763 -1.7896 28 6 4.0160 3.9665 -2.7562 29 6 5.2447 3.0307 -2.6260 30 8 5.2613 2.6210 -1.2473 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 5.0384 1.7688 1.4903 37 1 3.3581 1.9029 2.1680 38 1 1.7560 3.7190 0.4451 39 1 0.0774 4.4077 0.6511 40 1 -2.1032 5.4288 1.0654 41 1 -4.5264 4.9396 2.3097 42 1 -0.2610 8.2291 3.7768 43 1 1.9112 7.1908 3.3606 44 1 2.4794 2.4705 -2.2931 45 1 2.3154 4.0010 -1.3703 46 1 4.2538 4.9758 -2.4202 47 1 3.6354 3.9748 -3.7776 48 1 6.1592 3.5709 -2.8710 49 1 5.1307 2.1638 -3.2768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274099394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:36 Heat of formation + Delta-G solvation = -84.351398 kcal Electronic energy + Delta-G solvation = -31040.341862 eV Core-core repulsion = 26932.856058 eV Total energy + Delta-G solvation = -4107.485804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.09074 -38.77477 -37.96903 -37.05531 -35.62722 -33.84671 -32.70283 -32.09309 -30.86942 -29.93245 -29.40404 -27.80337 -26.12507 -24.37405 -23.27843 -22.69096 -21.96129 -21.60046 -20.91457 -19.74878 -19.11085 -17.52105 -17.39268 -16.89667 -16.24524 -15.78916 -15.75728 -15.66460 -15.37964 -14.86364 -14.13597 -14.01119 -13.80627 -13.70740 -13.61070 -13.35624 -13.14252 -12.81204 -12.63281 -12.57753 -12.19363 -12.07540 -11.97490 -11.91979 -11.73199 -11.41505 -11.32954 -11.28100 -11.21461 -11.11493 -10.94636 -10.64937 -10.63703 -10.49464 -10.01421 -9.67346 -9.52906 -9.44516 -9.33001 -8.92343 -8.48407 -7.68996 -7.51741 -7.01700 -4.58273 2.25833 2.90751 2.92945 2.96468 2.98837 3.06673 3.74840 3.75941 3.86213 4.07978 4.31997 4.48301 4.56569 4.60229 4.74841 4.83669 4.93841 4.98459 4.99914 5.13877 5.22373 5.24875 5.44314 5.52095 5.54750 5.60348 5.66178 5.73625 5.83091 5.85641 5.92474 6.00083 6.02911 6.06765 6.10791 6.13541 6.28970 6.35029 6.74884 6.79724 6.84942 7.02082 7.10066 7.16077 7.25358 7.46519 7.69429 7.82983 7.88716 8.09601 8.33529 8.42472 8.65389 8.77894 9.13877 9.90231 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.002996 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.761308 B = 9343.451741 C =10270.586256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.358 6.358 4 C 0.064 3.936 5 H 0.078 0.922 6 C -0.168 4.168 7 C 0.137 3.863 8 H 0.104 0.896 9 N -0.713 5.713 10 C 0.574 3.426 11 O -0.575 6.575 12 C -0.282 4.282 13 C -0.061 4.061 14 C -0.178 4.178 15 C 0.129 3.871 16 C -0.444 4.444 17 H 0.084 0.916 18 C 0.075 3.925 19 N -0.771 5.771 20 Si 0.913 3.087 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.239 4.239 25 C -0.022 4.022 26 C 0.079 3.921 27 C -0.135 4.135 28 C -0.157 4.157 29 C 0.050 3.950 30 O -0.349 6.349 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.404 0.596 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.662 -10.781 -10.344 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 O -0.277 6.277 4 C 0.006 3.994 5 H 0.096 0.904 6 C -0.207 4.207 7 C 0.030 3.970 8 H 0.122 0.878 9 N -0.366 5.366 10 C 0.369 3.631 11 O -0.457 6.457 12 C -0.287 4.287 13 C -0.080 4.080 14 C -0.197 4.197 15 C 0.126 3.874 16 C -0.472 4.472 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.394 5.394 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.259 4.259 25 C -0.041 4.041 26 C 0.037 3.963 27 C -0.172 4.172 28 C -0.195 4.195 29 C -0.026 4.026 30 O -0.267 6.267 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.242 0.758 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.252 -10.612 -9.857 16.669 hybrid contribution -1.146 -0.256 -0.414 1.245 sum 7.106 -10.868 -10.271 16.556 Atomic orbital electron populations 1.21763 0.93321 1.02220 1.03784 1.22538 0.95764 0.83408 0.99846 1.87842 1.18776 1.26654 1.94441 1.23321 0.82045 0.97569 0.96508 0.90438 1.23923 1.01755 0.97131 0.97910 1.21700 0.88580 0.94069 0.92675 0.87794 1.45571 1.08766 1.33990 1.48321 1.18617 0.89469 0.78005 0.77010 1.90629 1.39328 1.64576 1.51144 1.18875 0.91204 1.06026 1.12556 1.20490 0.92945 0.97259 0.97305 1.20963 0.96010 1.00757 1.01979 1.17785 0.92340 0.90017 0.87276 1.19851 0.90167 0.99408 1.37732 0.89747 1.26088 1.01983 0.94637 0.91944 1.69754 1.31426 1.06687 1.31582 0.86218 0.79812 0.80440 0.79847 1.18957 1.20050 1.18303 1.20711 0.93125 1.05514 1.06512 1.20357 0.96518 0.93084 0.94138 1.23244 0.83601 0.95145 0.94282 1.22840 0.98140 1.00915 0.95349 1.23298 0.95464 1.00075 1.00616 1.23508 0.99168 0.97150 0.82807 1.88282 1.26163 1.87178 1.25069 0.91210 0.91218 0.91735 0.93595 0.93311 0.88365 0.89992 0.75816 0.89280 0.86234 0.90289 0.88428 0.88131 0.90051 0.88936 0.90100 0.89884 0.89440 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.06 0.61 6.50 37.16 0.24 0.86 16 3 O -0.36 -4.53 8.24 -35.23 -0.29 -4.82 16 4 C 0.06 0.79 4.10 -26.17 -0.11 0.68 16 5 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 6 C -0.17 -2.32 7.71 -25.81 -0.20 -2.52 16 7 C 0.14 2.17 4.08 -67.36 -0.28 1.89 16 8 H 0.10 1.84 7.46 -51.93 -0.39 1.46 16 9 N -0.71 -12.66 4.24 -54.26 -0.23 -12.89 16 10 C 0.57 12.55 7.76 -12.42 -0.10 12.46 16 11 O -0.57 -14.01 15.92 5.29 0.08 -13.93 16 12 C -0.28 -6.55 5.89 -104.73 -0.62 -7.17 16 13 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 14 C -0.18 -4.37 8.63 -39.27 -0.34 -4.71 16 15 C 0.13 3.30 5.58 -106.80 -0.60 2.70 16 16 C -0.44 -11.06 9.04 -37.74 -0.34 -11.40 16 17 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 18 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 19 N -0.77 -18.44 10.95 55.56 0.61 -17.83 16 20 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 21 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 22 H -0.28 -5.10 7.11 56.52 0.40 -4.69 16 23 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 24 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 25 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 26 C 0.08 1.02 1.42 -89.97 -0.13 0.89 16 27 C -0.13 -1.60 5.50 -24.99 -0.14 -1.74 16 28 C -0.16 -1.58 7.16 -24.38 -0.17 -1.75 16 29 C 0.05 0.48 7.79 38.21 0.30 0.78 16 30 O -0.35 -4.45 11.12 -35.23 -0.39 -4.84 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.40 6.81 4.40 -40.82 -0.18 6.63 16 39 H 0.09 1.75 6.37 -52.48 -0.33 1.42 16 40 H 0.12 2.97 6.16 -52.49 -0.32 2.65 16 41 H 0.29 6.14 8.29 -40.82 -0.34 5.81 16 42 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 43 H 0.10 2.33 7.63 -52.48 -0.40 1.93 16 44 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 45 H 0.09 1.25 6.15 -51.93 -0.32 0.93 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -28.66 394.51 -10.01 -38.67 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -7.39 Total: 14.81 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -3.31 Total: -17.36 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.38 Total: -30.72 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.60 Total: -23.59 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.66 -10.01 -38.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274099394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.680 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds