Wall clock time and date at job start Wed Apr 1 2020 04:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.46918 * 2 1 4 4 C 1.42897 * 113.99668 * 179.97438 * 3 2 1 5 5 H 1.09004 * 112.87117 * 18.72984 * 4 3 2 6 6 C 1.53880 * 113.64407 * 247.32832 * 4 3 2 7 7 C 1.53896 * 87.18046 * 270.49869 * 6 4 3 8 8 H 1.08999 * 113.71985 * 220.47960 * 7 6 4 9 9 N 1.46498 * 113.63928 * 89.50176 * 7 6 4 10 10 C 1.34779 * 120.00014 * 107.68142 * 9 7 6 11 11 O 1.21590 * 119.99720 * 359.97438 * 10 9 7 12 12 C 1.47637 * 120.00265 * 180.27280 * 10 9 7 13 13 C 1.40012 * 119.89200 * 359.45151 * 12 10 9 14 14 C 1.36319 * 120.10459 * 179.72043 * 13 12 10 15 15 C 1.40883 * 119.89267 * 0.57480 * 14 13 12 16 16 C 1.41114 * 120.10618 * 179.72206 * 15 14 13 17 17 H 1.07996 * 119.99704 * 204.61130 * 16 15 14 18 18 C 1.40227 * 119.99908 * 24.61755 * 16 15 14 19 19 N 1.30646 * 119.99736 * 17.88178 * 18 16 15 20 20 Si 1.86794 * 119.99836 * 197.88417 * 18 16 15 21 21 H 1.48501 * 109.47275 * 90.00023 * 20 18 16 22 22 H 1.48500 * 109.47098 * 209.99764 * 20 18 16 23 23 H 1.48495 * 109.47232 * 329.99693 * 20 18 16 24 24 C 1.40891 * 119.79145 * 359.69512 * 15 14 13 25 25 C 1.36315 * 119.89129 * 0.02562 * 24 15 14 26 26 C 1.53199 * 113.63848 * 150.00179 * 4 3 2 27 27 C 1.53856 * 114.61724 * 333.31480 * 26 4 3 28 28 C 1.55439 * 102.04668 * 208.59538 * 27 26 4 29 29 C 1.54995 * 101.01788 * 33.66814 * 28 27 26 30 30 O 1.42629 * 115.39777 * 206.49543 * 26 4 3 31 31 H 1.08999 * 109.47353 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47460 * 299.99880 * 1 2 3 33 33 H 1.09000 * 109.47029 * 59.99872 * 1 2 3 34 34 H 1.09004 * 109.46971 * 240.00050 * 2 1 3 35 35 H 1.09000 * 109.47029 * 120.00128 * 2 1 3 36 36 H 1.08997 * 113.59877 * 155.92904 * 6 4 3 37 37 H 1.09002 * 113.60165 * 25.06918 * 6 4 3 38 38 H 0.96998 * 119.99984 * 287.67768 * 9 7 6 39 39 H 1.08003 * 119.94964 * 359.97438 * 13 12 10 40 40 H 1.08002 * 120.05751 * 180.25350 * 14 13 12 41 41 H 0.97007 * 119.99542 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.05151 * 179.97438 * 24 15 14 43 43 H 1.08007 * 119.94702 * 179.97438 * 25 24 15 44 44 H 1.08992 * 110.91483 * 326.78242 * 27 26 4 45 45 H 1.08993 * 110.91263 * 90.40815 * 27 26 4 46 46 H 1.08997 * 111.11385 * 275.72441 * 28 27 26 47 47 H 1.09003 * 111.14529 * 151.61558 * 28 27 26 48 48 H 1.09001 * 110.30482 * 204.93917 * 29 28 27 49 49 H 1.08995 * 110.31136 * 82.77943 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9284 0.5453 -0.3216 6 6 4.0026 2.0507 1.3014 7 6 3.8504 3.4365 0.6497 8 1 4.6849 4.1088 0.8490 9 7 2.5468 4.0595 0.8918 10 6 2.4463 5.1059 1.7353 11 8 3.4375 5.5325 2.2956 12 6 1.1316 5.7300 1.9840 13 6 -0.0075 5.2404 1.3336 14 6 -1.2244 5.8097 1.5644 15 6 -1.3328 6.9002 2.4498 16 6 -2.5894 7.4968 2.6875 17 1 -2.6459 8.5236 3.0174 18 6 -3.7646 6.7563 2.4955 19 7 -3.7134 5.4519 2.4422 20 14 -5.4032 7.6349 2.3158 21 1 -5.6512 7.9316 0.8820 22 1 -6.4898 6.7671 2.8368 23 1 -5.3713 8.9043 3.0856 24 6 -0.1828 7.3930 3.0975 25 6 1.0289 6.8135 2.8648 26 6 3.9475 2.7202 -0.7011 27 6 3.0133 3.2763 -1.7896 28 6 4.0160 3.9665 -2.7562 29 6 5.2447 3.0307 -2.6260 30 8 5.2613 2.6210 -1.2473 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 5.0384 1.7688 1.4903 37 1 3.3581 1.9029 2.1680 38 1 1.7560 3.7190 0.4451 39 1 0.0774 4.4077 0.6511 40 1 -2.1032 5.4288 1.0654 41 1 -4.5264 4.9396 2.3097 42 1 -0.2610 8.2291 3.7768 43 1 1.9112 7.1908 3.3606 44 1 2.4794 2.4705 -2.2931 45 1 2.3154 4.0010 -1.3703 46 1 4.2538 4.9758 -2.4202 47 1 3.6354 3.9748 -3.7776 48 1 6.1592 3.5709 -2.8710 49 1 5.1307 2.1638 -3.2768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274099394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:35 Heat of formation + Delta-G solvation = -99.815666 kcal Electronic energy + Delta-G solvation = -31041.012443 eV Core-core repulsion = 26932.856058 eV Total energy + Delta-G solvation = -4108.156385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.19019 -40.43368 -38.97573 -38.75883 -36.81009 -35.67066 -34.07439 -33.09182 -31.98125 -31.49654 -31.28340 -28.71626 -27.88809 -25.67125 -24.27244 -23.55713 -23.48843 -22.77729 -22.60584 -21.31020 -20.36327 -19.36114 -18.84827 -17.82061 -17.35131 -17.16001 -17.09125 -16.78185 -16.51250 -16.12329 -15.74319 -15.59932 -15.31939 -15.05984 -14.67268 -14.54892 -14.47360 -14.29948 -13.94774 -13.74671 -13.68807 -13.40664 -13.21206 -13.05535 -12.89633 -12.84513 -12.73344 -12.63349 -12.38572 -12.21980 -12.15459 -12.01735 -11.76156 -11.53888 -11.50281 -11.36760 -11.12563 -10.78814 -10.61968 -10.37373 -9.97669 -9.57659 -9.40818 -8.78937 -6.48166 0.43185 1.15054 1.39464 1.43924 1.54005 1.86030 2.10651 2.17839 2.56394 2.76990 3.01051 3.37747 3.44882 3.64508 3.67346 3.77985 3.89608 4.03468 4.11314 4.20465 4.22425 4.30217 4.31756 4.41077 4.44204 4.50835 4.52280 4.72139 4.76783 4.80998 4.86967 4.90428 4.92255 4.93684 4.99912 5.02285 5.04606 5.06830 5.15799 5.18972 5.29717 5.32313 5.55853 5.59833 5.82063 5.91712 5.95189 5.99625 6.22256 6.31409 6.53919 6.71904 6.77180 6.88827 7.43228 8.16268 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.002996 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.761308 B = 9343.451741 C =10270.586256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.077 3.923 5 H 0.101 0.899 6 C -0.166 4.166 7 C 0.117 3.883 8 H 0.078 0.922 9 N -0.694 5.694 10 C 0.573 3.427 11 O -0.606 6.606 12 C -0.293 4.293 13 C -0.051 4.051 14 C -0.195 4.195 15 C 0.103 3.897 16 C -0.472 4.472 17 H 0.086 0.914 18 C 0.038 3.962 19 N -0.796 5.796 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.258 1.258 24 C -0.252 4.252 25 C -0.032 4.032 26 C 0.089 3.911 27 C -0.136 4.136 28 C -0.154 4.154 29 C 0.046 3.954 30 O -0.363 6.363 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.410 0.590 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.297 0.703 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.107 0.893 48 H 0.101 0.899 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 -12.479 -12.313 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.296 6.296 4 C 0.018 3.982 5 H 0.119 0.881 6 C -0.205 4.205 7 C 0.010 3.990 8 H 0.097 0.903 9 N -0.347 5.347 10 C 0.367 3.633 11 O -0.490 6.490 12 C -0.298 4.298 13 C -0.070 4.070 14 C -0.214 4.214 15 C 0.100 3.900 16 C -0.499 4.499 17 H 0.104 0.896 18 C -0.181 4.181 19 N -0.419 5.419 20 Si 0.808 3.192 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.182 1.182 24 C -0.272 4.272 25 C -0.051 4.051 26 C 0.048 3.952 27 C -0.174 4.174 28 C -0.191 4.191 29 C -0.030 4.030 30 O -0.281 6.281 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.249 0.751 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.126 0.874 48 H 0.119 0.881 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.656 -12.351 -11.851 18.751 hybrid contribution -0.890 0.223 0.195 0.938 sum 6.765 -12.128 -11.656 18.131 Atomic orbital electron populations 1.21778 0.93348 1.03315 1.02517 1.22728 0.95744 0.82402 1.01164 1.87824 1.18869 1.28479 1.94425 1.23182 0.82160 0.98073 0.94754 0.88077 1.23936 1.02578 0.95728 0.98214 1.21953 0.86438 0.94451 0.96164 0.90336 1.45349 1.10047 1.32568 1.46699 1.18466 0.88513 0.78814 0.77504 1.90605 1.39996 1.65804 1.52644 1.19123 0.92231 1.06012 1.12422 1.20654 0.91984 0.97370 0.96977 1.20984 0.96502 1.01354 1.02574 1.18123 0.93098 0.90812 0.87961 1.20127 0.90991 0.99821 1.39009 0.89624 1.26928 1.05146 0.95184 0.90833 1.69771 1.33145 1.07981 1.31040 0.85101 0.75025 0.79132 0.79961 1.18270 1.18904 1.18159 1.20851 0.93213 1.06092 1.07016 1.20489 0.96461 0.93571 0.94558 1.23028 0.84300 0.94752 0.93134 1.22842 0.98032 1.01032 0.95505 1.23306 0.95244 0.99163 1.01436 1.23754 0.99545 0.98107 0.81584 1.88266 1.25834 1.87229 1.26807 0.88996 0.93442 0.91965 0.91334 0.92837 0.86891 0.91566 0.75119 0.86650 0.86756 0.89156 0.87696 0.88012 0.88511 0.90969 0.91644 0.87434 0.88104 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 10.28 71.98 0.74 -1.98 16 2 C 0.06 0.99 6.50 71.98 0.47 1.45 16 3 O -0.38 -8.85 8.24 -148.98 -1.23 -10.08 16 4 C 0.08 1.74 4.10 30.96 0.13 1.86 16 5 H 0.10 1.84 7.87 -2.38 -0.02 1.82 16 6 C -0.17 -4.46 7.71 31.19 0.24 -4.22 16 7 C 0.12 3.70 4.08 45.36 0.19 3.89 16 8 H 0.08 2.89 7.46 -2.39 -0.02 2.87 16 9 N -0.69 -24.98 4.24 -443.84 -1.88 -26.87 16 10 C 0.57 25.75 7.76 86.72 0.67 26.42 16 11 O -0.61 -30.57 15.92 -4.00 -0.06 -30.64 16 12 C -0.29 -13.99 5.89 -19.94 -0.12 -14.10 16 13 C -0.05 -2.32 9.47 22.25 0.21 -2.11 16 14 C -0.19 -9.78 8.63 22.47 0.19 -9.59 16 15 C 0.10 5.42 5.58 -21.28 -0.12 5.30 16 16 C -0.47 -23.95 9.04 23.46 0.21 -23.73 16 17 H 0.09 4.17 7.91 -2.91 -0.02 4.14 16 18 C 0.04 1.78 5.14 85.35 0.44 2.22 16 19 N -0.80 -38.02 10.95 21.87 0.24 -37.78 16 20 Si 0.99 34.69 29.60 68.60 2.03 36.72 16 21 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 24 C -0.25 -12.75 9.73 22.47 0.22 -12.53 16 25 C -0.03 -1.56 9.52 22.25 0.21 -1.35 16 26 C 0.09 2.20 1.42 -10.37 -0.01 2.18 16 27 C -0.14 -3.02 5.50 31.72 0.17 -2.85 16 28 C -0.15 -2.79 7.16 32.12 0.23 -2.56 16 29 C 0.05 0.76 7.79 72.66 0.57 1.33 16 30 O -0.36 -8.53 11.12 -148.98 -1.66 -10.19 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.41 13.78 4.40 -92.71 -0.41 13.37 16 39 H 0.12 4.52 6.37 -2.91 -0.02 4.50 16 40 H 0.11 5.79 6.16 -2.91 -0.02 5.77 16 41 H 0.30 12.57 8.29 -92.70 -0.77 11.80 16 42 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 43 H 0.10 4.92 7.63 -2.91 -0.02 4.90 16 44 H 0.10 1.85 7.94 -2.39 -0.02 1.83 16 45 H 0.07 1.90 6.15 -2.39 -0.01 1.88 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -63.43 394.51 2.63 -60.80 By element: Atomic # 1 Polarization: 47.84 SS G_CDS: 0.56 Total: 48.39 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 4.64 Total: -30.37 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -1.64 Total: -64.64 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -2.95 Total: -50.90 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Total: -63.43 2.63 -60.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274099394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.019 kcal (2) G-P(sol) polarization free energy of solvation -63.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds