Wall clock time and date at job start Wed Apr 1 2020 03:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.55523 * 2 1 4 4 C 1.53709 * 109.44922 * 120.26506 * 2 1 3 5 5 N 1.47158 * 108.19603 * 172.42065 * 4 2 1 6 6 C 1.34774 * 120.99056 * 129.39848 * 5 4 2 7 7 O 1.21585 * 120.00413 * 175.53173 * 6 5 4 8 8 C 1.47648 * 119.99984 * 355.53205 * 6 5 4 9 9 C 1.40015 * 119.89326 * 224.95625 * 8 6 5 10 10 C 1.36314 * 120.10501 * 179.97438 * 9 8 6 11 11 C 1.40891 * 119.89354 * 0.02562 * 10 9 8 12 12 C 1.41103 * 120.10490 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00224 * 330.86120 * 12 11 10 14 14 C 1.40231 * 120.00169 * 150.59461 * 12 11 10 15 15 N 1.30642 * 119.99952 * 349.70830 * 14 12 11 16 16 Si 1.86804 * 120.00060 * 169.71035 * 14 12 11 17 17 H 1.48496 * 109.47148 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47092 * 120.00116 * 16 14 12 19 19 H 1.48502 * 109.47041 * 239.99792 * 16 14 12 20 20 C 1.40897 * 119.79324 * 0.25281 * 11 10 9 21 21 C 1.36319 * 119.88456 * 359.48573 * 20 11 10 22 22 C 1.47178 * 118.01511 * 309.12019 * 5 4 2 23 23 C 1.53172 * 108.37196 * 50.64988 * 22 5 4 24 24 C 1.53062 * 109.50529 * 187.69154 * 23 22 5 25 25 C 1.53111 * 109.16585 * 183.31164 * 24 23 22 26 26 O 1.42901 * 109.40778 * 57.46036 * 25 24 23 27 27 C 1.42908 * 114.13566 * 298.82025 * 26 25 24 28 28 C 1.53074 * 109.46642 * 67.97624 * 23 22 5 29 29 O 1.42843 * 109.44482 * 307.86214 * 23 22 5 30 30 H 1.09002 * 109.46392 * 180.13103 * 1 2 3 31 31 H 1.08997 * 109.47047 * 300.12878 * 1 2 3 32 32 H 1.08993 * 109.47191 * 60.13766 * 1 2 3 33 33 H 1.09011 * 109.82825 * 52.73445 * 4 2 1 34 34 H 1.08993 * 109.74625 * 292.05970 * 4 2 1 35 35 H 1.07998 * 119.94874 * 359.95946 * 9 8 6 36 36 H 1.07996 * 120.05510 * 180.02562 * 10 9 8 37 37 H 0.97001 * 119.99992 * 180.02562 * 15 14 12 38 38 H 1.07993 * 120.05766 * 179.72185 * 20 11 10 39 39 H 1.08001 * 119.93918 * 180.25547 * 21 20 11 40 40 H 1.09001 * 109.67912 * 170.36848 * 22 5 4 41 41 H 1.08998 * 109.68398 * 290.92688 * 22 5 4 42 42 H 1.09006 * 109.52094 * 303.21916 * 24 23 22 43 43 H 1.09001 * 109.51854 * 63.40291 * 24 23 22 44 44 H 1.09000 * 109.48334 * 297.48156 * 25 24 23 45 45 H 1.09002 * 109.49119 * 177.44744 * 25 24 23 46 46 H 1.08999 * 109.48273 * 301.22017 * 27 26 25 47 47 H 1.09003 * 109.49740 * 181.17685 * 27 26 25 48 48 H 1.08999 * 109.52215 * 296.63482 * 28 23 22 49 49 H 1.09000 * 109.52506 * 56.76213 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0418 -0.7305 1.2518 5 7 3.5015 -0.8756 1.1346 6 6 4.3188 -0.5029 2.1394 7 8 5.5149 -0.7053 2.0570 8 6 3.7618 0.1510 3.3402 9 6 4.3914 1.2817 3.8745 10 6 3.8805 1.8892 4.9827 11 6 2.7173 1.3773 5.5908 12 6 2.1849 2.0023 6.7384 13 1 2.8383 2.5266 7.4199 14 6 0.8067 1.9473 6.9911 15 7 -0.0081 1.4979 6.0741 16 14 0.1358 2.5168 8.6389 17 1 1.2567 2.9769 9.4974 18 1 -0.8166 3.6360 8.4254 19 1 -0.5661 1.3897 9.3038 20 6 2.0906 0.2357 5.0529 21 6 2.6059 -0.3617 3.9413 22 6 4.0418 -1.4455 -0.1101 23 6 3.4304 -0.6886 -1.2930 24 6 3.8231 -1.3805 -2.6006 25 6 3.2778 -0.5717 -3.7808 26 8 3.7839 0.7631 -3.7160 27 6 3.4055 1.4749 -2.5360 28 6 3.9565 0.7489 -1.3056 29 8 2.0077 -0.6765 -1.1656 30 1 -0.3632 -1.0277 0.0024 31 1 -0.3633 0.5158 0.8888 32 1 -0.3633 0.5117 -0.8911 33 1 1.5794 -1.7153 1.3202 34 1 1.8011 -0.1490 2.1417 35 1 5.2834 1.6731 3.4081 36 1 4.3666 2.7615 5.3939 37 1 -0.9615 1.4603 6.2488 38 1 1.2013 -0.1629 5.5183 39 1 2.1238 -1.2343 3.5258 40 1 5.1261 -1.3347 -0.1242 41 1 3.7793 -2.5015 -0.1747 42 1 4.9094 -1.4388 -2.6699 43 1 3.4014 -2.3854 -2.6218 44 1 2.1889 -0.5503 -3.7346 45 1 3.5929 -1.0351 -4.7157 46 1 2.3184 1.5228 -2.4732 47 1 3.8125 2.4853 -2.5744 48 1 3.6303 1.2641 -0.4022 49 1 5.0457 0.7378 -1.3455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279151832.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:06 Heat of formation + Delta-G solvation = -102.820400 kcal Electronic energy + Delta-G solvation = -31795.711232 eV Core-core repulsion = 27687.424553 eV Total energy + Delta-G solvation = -4108.286680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.92646 -39.10821 -37.75316 -37.09884 -34.46729 -34.11172 -33.75615 -31.30489 -30.83398 -30.38991 -29.59805 -27.73026 -26.28258 -25.51427 -23.97180 -23.21425 -21.91085 -21.31587 -21.00555 -19.62773 -18.90105 -17.55766 -16.84870 -16.71181 -16.28543 -16.15265 -15.83135 -15.38220 -15.05620 -14.89651 -14.77495 -14.26057 -14.16859 -13.89715 -13.56925 -13.07678 -12.89713 -12.71983 -12.65528 -12.40490 -12.29052 -12.25379 -12.09995 -11.91768 -11.81792 -11.68399 -11.48333 -11.38878 -11.29094 -11.08661 -10.95925 -10.66990 -10.50685 -10.41882 -10.07493 -9.88404 -9.64558 -9.58667 -9.44475 -9.03713 -8.21959 -7.74993 -7.53881 -6.99212 -4.64250 2.25018 2.89951 2.90516 2.94980 2.99788 3.25278 3.52766 3.60273 3.75375 3.77337 4.44233 4.50384 4.58552 4.63546 4.85898 4.91155 5.07194 5.11796 5.19806 5.24741 5.36223 5.40987 5.44317 5.47740 5.55117 5.61655 5.65428 5.73269 5.76876 5.81125 5.86456 5.89244 5.97571 6.02083 6.04700 6.12691 6.16773 6.22029 6.70069 6.76087 6.82369 6.96006 7.06789 7.07466 7.19492 7.38901 7.51314 7.73272 7.81292 7.91788 8.03028 8.37255 8.61667 8.69688 8.81661 9.92885 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.002942 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.645420 B = 9516.551630 C =10135.532545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.067 0.933 4 C 0.070 3.930 5 N -0.618 5.618 6 C 0.580 3.420 7 O -0.563 6.563 8 C -0.272 4.272 9 C -0.034 4.034 10 C -0.229 4.229 11 C 0.127 3.873 12 C -0.448 4.448 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.785 5.785 16 Si 0.914 3.086 17 H -0.259 1.259 18 H -0.272 1.272 19 H -0.270 1.270 20 C -0.166 4.166 21 C -0.074 4.074 22 C 0.094 3.906 23 C 0.108 3.892 24 C -0.138 4.138 25 C 0.066 3.934 26 O -0.385 6.385 27 C 0.068 3.932 28 C -0.179 4.179 29 O -0.370 6.370 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.284 0.716 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 -3.121 -13.439 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.053 4.053 5 N -0.352 5.352 6 C 0.375 3.625 7 O -0.443 6.443 8 C -0.276 4.276 9 C -0.053 4.053 10 C -0.249 4.249 11 C 0.123 3.877 12 C -0.476 4.476 13 H 0.101 0.899 14 C -0.146 4.146 15 N -0.409 5.409 16 Si 0.738 3.262 17 H -0.182 1.182 18 H -0.197 1.197 19 H -0.195 1.195 20 C -0.185 4.185 21 C -0.093 4.093 22 C -0.029 4.029 23 C 0.068 3.932 24 C -0.176 4.176 25 C -0.011 4.011 26 O -0.304 6.304 27 C -0.009 4.009 28 C -0.217 4.217 29 O -0.289 6.289 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.141 0.859 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.101 0.899 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.398 -3.268 -13.782 14.233 hybrid contribution -0.484 0.150 1.176 1.281 sum -1.882 -3.118 -12.606 13.122 Atomic orbital electron populations 1.21721 0.92252 1.03042 1.02923 1.22646 0.95291 0.95900 0.84909 0.91562 1.22959 0.80182 1.01685 1.00476 1.48062 1.06821 1.64472 1.15860 1.18802 0.85254 0.76073 0.82414 1.90654 1.15883 1.56643 1.81081 1.18830 1.02829 1.04799 1.01153 1.20214 0.96297 0.93672 0.95113 1.20750 1.02259 1.02683 0.99174 1.17779 0.89803 0.89257 0.90816 1.19814 0.92489 1.28839 1.06499 0.89901 1.26027 0.97186 0.93196 0.98202 1.69694 1.05089 1.33308 1.32825 0.86149 0.79498 0.79127 0.81407 1.18231 1.19722 1.19524 1.21035 1.02471 0.96964 0.98030 1.20547 0.93913 0.98299 0.96578 1.22091 1.00522 0.96865 0.83454 1.21698 0.81874 0.94781 0.94834 1.22134 1.02158 1.00067 0.93222 1.22494 0.98461 0.82486 0.97664 1.87894 1.75589 1.25844 1.41056 1.22492 0.99223 0.95210 0.83979 1.22720 1.02436 0.96601 0.99904 1.87900 1.19793 1.77399 1.43833 0.91758 0.90200 0.91877 0.91380 0.85920 0.88783 0.88325 0.90488 0.85916 0.88709 0.88527 0.91480 0.89542 0.89879 0.92334 0.88984 0.92719 0.88971 0.89923 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.57 37.16 0.36 -1.23 16 2 C 0.07 0.94 3.04 -26.36 -0.08 0.86 16 3 H 0.07 0.93 6.20 -51.93 -0.32 0.61 16 4 C 0.07 1.06 4.59 -3.31 -0.02 1.04 16 5 N -0.62 -10.48 2.60 -173.26 -0.45 -10.93 16 6 C 0.58 12.06 7.30 -12.42 -0.09 11.97 16 7 O -0.56 -13.13 16.47 5.29 0.09 -13.05 16 8 C -0.27 -5.97 5.23 -104.73 -0.55 -6.51 16 9 C -0.03 -0.76 9.61 -39.61 -0.38 -1.14 16 10 C -0.23 -5.34 9.73 -39.27 -0.38 -5.72 16 11 C 0.13 3.12 5.54 -106.80 -0.59 2.52 16 12 C -0.45 -10.91 9.05 -37.75 -0.34 -11.25 16 13 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 14 C 0.07 1.67 5.26 -17.31 -0.09 1.58 16 15 N -0.78 -18.19 10.86 55.56 0.60 -17.58 16 16 Si 0.91 17.13 29.57 -169.99 -5.03 12.10 16 17 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 20 C -0.17 -3.91 8.59 -39.27 -0.34 -4.25 16 21 C -0.07 -1.60 7.25 -39.61 -0.29 -1.88 16 22 C 0.09 1.37 5.29 -3.58 -0.02 1.35 16 23 C 0.11 1.37 0.68 -90.46 -0.06 1.31 16 24 C -0.14 -1.41 5.15 -26.64 -0.14 -1.55 16 25 C 0.07 0.67 6.70 37.21 0.25 0.91 16 26 O -0.39 -4.73 10.76 -35.23 -0.38 -5.11 16 27 C 0.07 0.79 6.70 37.22 0.25 1.04 16 28 C -0.18 -2.32 4.45 -26.63 -0.12 -2.44 16 29 O -0.37 -4.83 8.86 -35.23 -0.31 -5.14 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 34 H 0.12 2.09 4.40 -51.93 -0.23 1.86 16 35 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.28 5.94 8.29 -40.82 -0.34 5.60 16 38 H 0.12 2.96 6.26 -52.49 -0.33 2.63 16 39 H 0.09 1.82 6.49 -52.49 -0.34 1.48 16 40 H 0.10 1.51 7.11 -51.93 -0.37 1.14 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.61 7.83 -51.93 -0.41 0.20 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.64 7.83 -51.93 -0.41 0.23 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.08 1.20 6.05 -51.93 -0.31 0.89 16 49 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -27.56 380.04 -9.72 -37.28 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.34 Total: 10.10 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.63 Total: -13.39 kcal Atomic # 7 Polarization: -28.67 SS G_CDS: 0.15 Total: -28.52 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.60 Total: -23.30 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.56 -9.72 -37.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279151832.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.544 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds