Wall clock time and date at job start Wed Apr 1 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.55523 * 2 1 4 4 C 1.53709 * 109.44922 * 120.26506 * 2 1 3 5 5 N 1.47158 * 108.19603 * 172.42065 * 4 2 1 6 6 C 1.34774 * 120.99056 * 129.39848 * 5 4 2 7 7 O 1.21585 * 120.00413 * 175.53173 * 6 5 4 8 8 C 1.47648 * 119.99984 * 355.53205 * 6 5 4 9 9 C 1.40015 * 119.89326 * 224.95625 * 8 6 5 10 10 C 1.36314 * 120.10501 * 179.97438 * 9 8 6 11 11 C 1.40891 * 119.89354 * 0.02562 * 10 9 8 12 12 C 1.41103 * 120.10490 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00224 * 330.86120 * 12 11 10 14 14 C 1.40231 * 120.00169 * 150.59461 * 12 11 10 15 15 N 1.30642 * 119.99952 * 349.70830 * 14 12 11 16 16 Si 1.86804 * 120.00060 * 169.71035 * 14 12 11 17 17 H 1.48496 * 109.47148 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47092 * 120.00116 * 16 14 12 19 19 H 1.48502 * 109.47041 * 239.99792 * 16 14 12 20 20 C 1.40897 * 119.79324 * 0.25281 * 11 10 9 21 21 C 1.36319 * 119.88456 * 359.48573 * 20 11 10 22 22 C 1.47178 * 118.01511 * 309.12019 * 5 4 2 23 23 C 1.53172 * 108.37196 * 50.64988 * 22 5 4 24 24 C 1.53062 * 109.50529 * 187.69154 * 23 22 5 25 25 C 1.53111 * 109.16585 * 183.31164 * 24 23 22 26 26 O 1.42901 * 109.40778 * 57.46036 * 25 24 23 27 27 C 1.42908 * 114.13566 * 298.82025 * 26 25 24 28 28 C 1.53074 * 109.46642 * 67.97624 * 23 22 5 29 29 O 1.42843 * 109.44482 * 307.86214 * 23 22 5 30 30 H 1.09002 * 109.46392 * 180.13103 * 1 2 3 31 31 H 1.08997 * 109.47047 * 300.12878 * 1 2 3 32 32 H 1.08993 * 109.47191 * 60.13766 * 1 2 3 33 33 H 1.09011 * 109.82825 * 52.73445 * 4 2 1 34 34 H 1.08993 * 109.74625 * 292.05970 * 4 2 1 35 35 H 1.07998 * 119.94874 * 359.95946 * 9 8 6 36 36 H 1.07996 * 120.05510 * 180.02562 * 10 9 8 37 37 H 0.97001 * 119.99992 * 180.02562 * 15 14 12 38 38 H 1.07993 * 120.05766 * 179.72185 * 20 11 10 39 39 H 1.08001 * 119.93918 * 180.25547 * 21 20 11 40 40 H 1.09001 * 109.67912 * 170.36848 * 22 5 4 41 41 H 1.08998 * 109.68398 * 290.92688 * 22 5 4 42 42 H 1.09006 * 109.52094 * 303.21916 * 24 23 22 43 43 H 1.09001 * 109.51854 * 63.40291 * 24 23 22 44 44 H 1.09000 * 109.48334 * 297.48156 * 25 24 23 45 45 H 1.09002 * 109.49119 * 177.44744 * 25 24 23 46 46 H 1.08999 * 109.48273 * 301.22017 * 27 26 25 47 47 H 1.09003 * 109.49740 * 181.17685 * 27 26 25 48 48 H 1.08999 * 109.52215 * 296.63482 * 28 23 22 49 49 H 1.09000 * 109.52506 * 56.76213 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0418 -0.7305 1.2518 5 7 3.5015 -0.8756 1.1346 6 6 4.3188 -0.5029 2.1394 7 8 5.5149 -0.7053 2.0570 8 6 3.7618 0.1510 3.3402 9 6 4.3914 1.2817 3.8745 10 6 3.8805 1.8892 4.9827 11 6 2.7173 1.3773 5.5908 12 6 2.1849 2.0023 6.7384 13 1 2.8383 2.5266 7.4199 14 6 0.8067 1.9473 6.9911 15 7 -0.0081 1.4979 6.0741 16 14 0.1358 2.5168 8.6389 17 1 1.2567 2.9769 9.4974 18 1 -0.8166 3.6360 8.4254 19 1 -0.5661 1.3897 9.3038 20 6 2.0906 0.2357 5.0529 21 6 2.6059 -0.3617 3.9413 22 6 4.0418 -1.4455 -0.1101 23 6 3.4304 -0.6886 -1.2930 24 6 3.8231 -1.3805 -2.6006 25 6 3.2778 -0.5717 -3.7808 26 8 3.7839 0.7631 -3.7160 27 6 3.4055 1.4749 -2.5360 28 6 3.9565 0.7489 -1.3056 29 8 2.0077 -0.6765 -1.1656 30 1 -0.3632 -1.0277 0.0024 31 1 -0.3633 0.5158 0.8888 32 1 -0.3633 0.5117 -0.8911 33 1 1.5794 -1.7153 1.3202 34 1 1.8011 -0.1490 2.1417 35 1 5.2834 1.6731 3.4081 36 1 4.3666 2.7615 5.3939 37 1 -0.9615 1.4603 6.2488 38 1 1.2013 -0.1629 5.5183 39 1 2.1238 -1.2343 3.5258 40 1 5.1261 -1.3347 -0.1242 41 1 3.7793 -2.5015 -0.1747 42 1 4.9094 -1.4388 -2.6699 43 1 3.4014 -2.3854 -2.6218 44 1 2.1889 -0.5503 -3.7346 45 1 3.5929 -1.0351 -4.7157 46 1 2.3184 1.5228 -2.4732 47 1 3.8125 2.4853 -2.5744 48 1 3.6303 1.2641 -0.4022 49 1 5.0457 0.7378 -1.3455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279151832.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:04 Heat of formation + Delta-G solvation = -117.024347 kcal Electronic energy + Delta-G solvation = -31796.327162 eV Core-core repulsion = 27687.424553 eV Total energy + Delta-G solvation = -4108.902609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.10836 -40.53642 -39.04636 -38.64958 -35.91223 -35.57178 -35.03479 -32.27115 -32.07794 -31.84084 -31.39446 -29.02192 -27.68884 -26.97240 -24.91291 -24.41522 -23.29746 -22.91357 -22.40728 -20.81108 -20.32960 -19.34591 -18.27996 -17.78816 -17.61915 -17.24394 -17.09743 -16.78679 -16.27484 -16.16846 -15.87622 -15.69432 -15.46251 -15.21430 -15.08888 -14.52729 -14.42157 -14.09056 -13.77514 -13.73966 -13.56589 -13.50738 -13.39087 -13.18788 -13.01990 -12.97733 -12.83873 -12.65216 -12.59207 -12.42103 -12.34610 -12.03991 -11.76350 -11.63844 -11.39168 -11.35851 -11.15158 -10.98339 -10.76655 -10.53421 -9.59606 -9.53789 -9.32318 -8.71296 -6.47941 0.50792 1.08303 1.39977 1.42185 1.54799 1.80774 1.98737 2.18902 2.50266 2.70567 2.91452 3.45077 3.54009 3.60734 3.65854 3.78237 3.84474 3.96795 3.99485 4.20369 4.24923 4.28171 4.30260 4.36017 4.41488 4.52807 4.55516 4.58095 4.62263 4.72452 4.73360 4.80842 4.82876 4.91634 4.92723 5.01704 5.04504 5.05827 5.13059 5.16056 5.27478 5.28833 5.42653 5.59021 5.75012 5.93780 5.99256 6.12205 6.20952 6.22029 6.34359 6.55456 6.80455 6.87722 7.19520 8.23455 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.002942 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.645420 B = 9516.551630 C =10135.532545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.075 3.925 3 H 0.056 0.944 4 C 0.068 3.932 5 N -0.610 5.610 6 C 0.579 3.421 7 O -0.595 6.595 8 C -0.277 4.277 9 C -0.042 4.042 10 C -0.242 4.242 11 C 0.102 3.898 12 C -0.480 4.480 13 H 0.080 0.920 14 C 0.038 3.962 15 N -0.806 5.806 16 Si 0.985 3.015 17 H -0.261 1.261 18 H -0.264 1.264 19 H -0.262 1.262 20 C -0.181 4.181 21 C -0.061 4.061 22 C 0.091 3.909 23 C 0.111 3.889 24 C -0.134 4.134 25 C 0.063 3.937 26 O -0.397 6.397 27 C 0.072 3.928 28 C -0.176 4.176 29 O -0.364 6.364 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.294 0.706 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.058 0.942 45 H 0.117 0.883 46 H 0.056 0.944 47 H 0.100 0.900 48 H 0.062 0.938 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 -3.911 -14.707 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 H 0.074 0.926 4 C -0.054 4.054 5 N -0.342 5.342 6 C 0.372 3.628 7 O -0.477 6.477 8 C -0.281 4.281 9 C -0.061 4.061 10 C -0.262 4.262 11 C 0.099 3.901 12 C -0.508 4.508 13 H 0.099 0.901 14 C -0.179 4.179 15 N -0.431 5.431 16 Si 0.805 3.195 17 H -0.184 1.184 18 H -0.189 1.189 19 H -0.187 1.187 20 C -0.201 4.201 21 C -0.080 4.080 22 C -0.032 4.032 23 C 0.070 3.930 24 C -0.171 4.171 25 C -0.013 4.013 26 O -0.317 6.317 27 C -0.004 4.004 28 C -0.214 4.214 29 O -0.284 6.284 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.135 0.865 46 H 0.074 0.926 47 H 0.118 0.882 48 H 0.080 0.920 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.831 -4.071 -15.095 15.889 hybrid contribution -0.032 0.356 1.467 1.510 sum -2.863 -3.716 -13.628 14.412 Atomic orbital electron populations 1.21697 0.90355 1.03855 1.03462 1.22600 0.96648 0.94993 0.84059 0.92621 1.23058 0.78995 1.02511 1.00861 1.48029 1.07375 1.63075 1.15707 1.18606 0.85072 0.76228 0.82877 1.90632 1.17101 1.58222 1.81777 1.19064 1.02752 1.04520 1.01792 1.20366 0.96596 0.94088 0.95029 1.20877 1.02428 1.03220 0.99633 1.18095 0.90521 0.89961 0.91557 1.20037 0.93686 1.30085 1.06988 0.90145 1.26790 0.96754 0.92940 1.01460 1.69714 1.05833 1.33224 1.34296 0.85100 0.78644 0.78891 0.76824 1.18426 1.18887 1.18699 1.21007 1.02711 0.97311 0.99049 1.20681 0.93377 0.98437 0.95512 1.22313 1.00000 0.97980 0.82871 1.21757 0.81540 0.94437 0.95236 1.22167 1.02694 1.00658 0.91616 1.22673 0.98446 0.81551 0.98642 1.87887 1.75892 1.26956 1.40916 1.22454 0.99179 0.95489 0.83300 1.22674 1.01954 0.97062 0.99753 1.87921 1.19886 1.77181 1.43394 0.90782 0.90416 0.90621 0.89697 0.87881 0.88203 0.87738 0.89460 0.86725 0.86439 0.89746 0.89802 0.88953 0.88141 0.92395 0.86521 0.92599 0.88158 0.91972 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.57 71.98 0.69 -2.07 16 2 C 0.08 1.89 3.04 30.83 0.09 1.98 16 3 H 0.06 1.54 6.20 -2.38 -0.01 1.52 16 4 C 0.07 1.99 4.59 86.49 0.40 2.38 16 5 N -0.61 -20.32 2.60 -820.32 -2.14 -22.45 16 6 C 0.58 24.22 7.30 86.73 0.63 24.85 16 7 O -0.59 -28.13 16.47 -3.98 -0.07 -28.20 16 8 C -0.28 -12.35 5.23 -19.93 -0.10 -12.46 16 9 C -0.04 -1.93 9.61 22.25 0.21 -1.72 16 10 C -0.24 -11.67 9.73 22.47 0.22 -11.45 16 11 C 0.10 5.16 5.54 -21.28 -0.12 5.04 16 12 C -0.48 -23.93 9.05 23.46 0.21 -23.71 16 13 H 0.08 3.90 7.87 -2.91 -0.02 3.87 16 14 C 0.04 1.74 5.26 85.35 0.45 2.19 16 15 N -0.81 -37.45 10.86 21.87 0.24 -37.21 16 16 Si 0.98 34.74 29.57 68.60 2.03 36.77 16 17 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 18 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 19 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 20 C -0.18 -8.74 8.59 22.47 0.19 -8.55 16 21 C -0.06 -2.65 7.25 22.25 0.16 -2.49 16 22 C 0.09 2.53 5.29 86.31 0.46 2.99 16 23 C 0.11 2.60 0.68 -10.69 -0.01 2.60 16 24 C -0.13 -2.38 5.15 30.65 0.16 -2.22 16 25 C 0.06 1.10 6.70 72.02 0.48 1.58 16 26 O -0.40 -8.95 10.76 -148.98 -1.60 -10.56 16 27 C 0.07 1.61 6.70 72.02 0.48 2.09 16 28 C -0.18 -4.48 4.45 30.66 0.14 -4.34 16 29 O -0.36 -8.71 8.86 -148.98 -1.32 -10.03 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 2.22 8.14 -2.38 -0.02 2.21 16 34 H 0.10 3.48 4.40 -2.39 -0.01 3.47 16 35 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 37 H 0.29 12.16 8.29 -92.71 -0.77 11.39 16 38 H 0.11 5.65 6.26 -2.91 -0.02 5.63 16 39 H 0.12 4.44 6.49 -2.91 -0.02 4.42 16 40 H 0.08 2.60 7.11 -2.39 -0.02 2.58 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.03 7.83 -2.39 -0.02 1.01 16 45 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 1.22 7.83 -2.39 -0.02 1.20 16 47 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.06 1.83 6.05 -2.39 -0.01 1.81 16 49 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -59.72 380.04 2.85 -56.88 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: 0.96 Total: 38.12 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 4.75 Total: -23.33 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -1.90 Total: -59.66 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -2.99 Total: -48.78 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Total: -59.72 2.85 -56.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279151832.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.147 kcal (2) G-P(sol) polarization free energy of solvation -59.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds