Wall clock time and date at job start Wed Apr 1 2020 03:06:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08997 * 109.51294 * 2 1
4 4 C 1.53721 * 109.48799 * 120.26046 * 2 1 3
5 5 N 1.47152 * 108.19255 * 172.44914 * 4 2 1
6 6 C 1.34775 * 120.99326 * 129.39815 * 5 4 2
7 7 O 1.21550 * 120.00093 * 176.12551 * 6 5 4
8 8 C 1.47890 * 120.00032 * 356.39911 * 6 5 4
9 9 C 1.39920 * 120.02337 * 33.33345 * 8 6 5
10 10 C 1.38325 * 120.35583 * 179.71927 * 9 8 6
11 11 C 1.37757 * 120.41197 * 0.55766 * 10 9 8
12 12 C 1.40742 * 120.03888 * 359.72355 * 11 10 9
13 13 C 1.41439 * 120.17714 * 180.02562 * 12 11 10
14 14 H 1.08001 * 119.99824 * 330.60126 * 13 12 11
15 15 C 1.39938 * 120.00161 * 150.61037 * 13 12 11
16 16 N 1.30825 * 119.99837 * 349.59258 * 15 13 12
17 17 Si 1.86794 * 119.99947 * 169.60002 * 15 13 12
18 18 H 1.48504 * 109.47474 * 359.97438 * 17 15 13
19 19 H 1.48502 * 109.47042 * 119.99546 * 17 15 13
20 20 H 1.48500 * 109.47259 * 239.99559 * 17 15 13
21 21 C 1.38993 * 120.02532 * 213.61072 * 8 6 5
22 22 C 1.47182 * 118.01590 * 309.11542 * 5 4 2
23 23 C 1.53181 * 108.37257 * 50.65241 * 22 5 4
24 24 C 1.53055 * 109.50148 * 187.69733 * 23 22 5
25 25 C 1.53118 * 109.16057 * 183.31108 * 24 23 22
26 26 O 1.42900 * 109.40672 * 57.45889 * 25 24 23
27 27 C 1.42912 * 114.13909 * 298.81901 * 26 25 24
28 28 C 1.53076 * 109.46414 * 67.97629 * 23 22 5
29 29 O 1.42850 * 109.43864 * 307.86429 * 23 22 5
30 30 H 1.09006 * 109.46899 * 180.11336 * 1 2 3
31 31 H 1.08999 * 109.47301 * 300.11222 * 1 2 3
32 32 H 1.08995 * 109.47186 * 60.11435 * 1 2 3
33 33 H 1.08993 * 109.83113 * 52.75889 * 4 2 1
34 34 H 1.08996 * 109.73702 * 292.08232 * 4 2 1
35 35 H 1.07997 * 119.81844 * 359.97409 * 9 8 6
36 36 H 1.07999 * 119.79639 * 180.28149 * 10 9 8
37 37 H 1.08004 * 119.97787 * 179.69816 * 11 10 9
38 38 H 0.97002 * 120.00078 * 179.97438 * 16 15 13
39 39 H 1.07999 * 120.20147 * 0.02562 * 21 8 6
40 40 H 1.08993 * 109.68518 * 170.37032 * 22 5 4
41 41 H 1.09000 * 109.68257 * 290.93418 * 22 5 4
42 42 H 1.08998 * 109.52344 * 303.21191 * 24 23 22
43 43 H 1.08995 * 109.52551 * 63.40759 * 24 23 22
44 44 H 1.08998 * 109.48269 * 297.47815 * 25 24 23
45 45 H 1.09001 * 109.48415 * 177.43462 * 25 24 23
46 46 H 1.09009 * 109.48365 * 301.22049 * 27 26 25
47 47 H 1.09000 * 109.50110 * 181.18260 * 27 26 25
48 48 H 1.08999 * 109.52274 * 296.63761 * 28 23 22
49 49 H 1.09001 * 109.52275 * 56.82833 * 28 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8941 1.0274 0.0000
4 6 2.0428 -0.7303 1.2517
5 7 3.5025 -0.8742 1.1339
6 6 4.3200 -0.5010 2.1383
7 8 5.5171 -0.6927 2.0507
8 6 3.7599 0.1361 3.3497
9 6 2.4920 -0.2330 3.8123
10 6 1.9639 0.3543 4.9479
11 6 2.6747 1.3172 5.6299
12 6 3.9491 1.7056 5.1762
13 6 4.6817 2.6936 5.8745
14 1 4.1614 3.4678 6.4188
15 6 6.0808 2.6682 5.8600
16 7 6.7111 1.6278 5.3785
17 14 7.0483 4.1196 6.5283
18 1 6.1071 5.1620 7.0108
19 1 7.9056 3.6672 7.6532
20 1 7.9014 4.6837 5.4516
21 6 4.4901 1.1062 4.0262
22 6 4.0428 -1.4438 -0.1111
23 6 3.4303 -0.6872 -1.2938
24 6 3.8230 -1.3789 -2.6015
25 6 3.2766 -0.5705 -3.7814
26 8 3.7818 0.7646 -3.7168
27 6 3.4034 1.4763 -2.5367
28 6 3.9554 0.7507 -1.3066
29 8 2.0076 -0.6762 -1.1658
30 1 -0.3633 -1.0277 0.0020
31 1 -0.3634 0.5156 0.8890
32 1 -0.3633 0.5120 -0.8910
33 1 1.5812 -1.7153 1.3202
34 1 1.8020 -0.1488 2.1416
35 1 1.9244 -0.9835 3.2822
36 1 0.9863 0.0592 5.2995
37 1 2.2535 1.7747 6.5130
38 1 7.6809 1.6103 5.3681
39 1 5.4670 1.3977 3.6699
40 1 5.1269 -1.3322 -0.1257
41 1 3.7810 -2.4999 -0.1756
42 1 4.9092 -1.4363 -2.6712
43 1 3.4020 -2.3841 -2.6225
44 1 2.1878 -0.5498 -3.7348
45 1 3.5919 -1.0336 -4.7165
46 1 2.3162 1.5235 -2.4735
47 1 3.8096 2.4870 -2.5753
48 1 3.6292 1.2656 -0.4030
49 1 5.0446 0.7403 -1.3480
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000279288383.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:06:15
Heat of formation + Delta-G solvation = -86.362088 kcal
Electronic energy + Delta-G solvation = -31980.805718 eV
Core-core repulsion = 27873.232724 eV
Total energy + Delta-G solvation = -4107.572994 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-40.97420 -39.17181 -37.74244 -37.03761 -34.63264 -34.10344 -33.61483 -31.30373
-30.88469 -30.41766 -29.55698 -27.58301 -26.22377 -25.39715 -23.97577 -23.46414
-22.07906 -21.38175 -21.00335 -19.62059 -18.95154 -17.63567 -16.77831 -16.34855
-16.29849 -16.07381 -15.82309 -15.26340 -15.13680 -14.94946 -14.75996 -14.48358
-14.27038 -13.85410 -13.51240 -13.11812 -12.92416 -12.80036 -12.68213 -12.52517
-12.39584 -12.21797 -12.16235 -11.92280 -11.76784 -11.65328 -11.48570 -11.19744
-11.11446 -10.98592 -10.79999 -10.63392 -10.47743 -10.21560 -10.13588 -9.90300
-9.70939 -9.63111 -9.32449 -8.95752 -8.25032 -7.68394 -7.51824 -6.78956
-4.49801 2.18790 2.72372 3.04930 3.06676 3.09580 3.21025 3.50979
3.65081 3.77643 3.88662 4.48351 4.54116 4.57730 4.62925 4.85060
4.87201 5.02065 5.08815 5.15930 5.23885 5.31652 5.37656 5.45339
5.47435 5.54973 5.56853 5.60546 5.68102 5.72069 5.77543 5.82744
5.88721 5.93612 5.97941 6.02012 6.10260 6.13461 6.19465 6.59467
6.74219 6.91960 6.94443 7.07866 7.15276 7.16407 7.30798 7.56542
7.67607 7.78444 7.92623 8.09507 8.43617 8.74278 8.75261 8.79787
10.14456
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.013950 B = 0.003348 C = 0.003027
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2006.632638 B = 8361.871079 C = 9249.355516
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.068 3.932
3 H 0.067 0.933
4 C 0.047 3.953
5 N -0.616 5.616
6 C 0.568 3.432
7 O -0.539 6.539
8 C -0.123 4.123
9 C -0.235 4.235
10 C -0.097 4.097
11 C -0.208 4.208
12 C 0.103 3.897
13 C -0.461 4.461
14 H 0.081 0.919
15 C 0.070 3.930
16 N -0.789 5.789
17 Si 0.912 3.088
18 H -0.260 1.260
19 H -0.273 1.273
20 H -0.272 1.272
21 C -0.092 4.092
22 C 0.093 3.907
23 C 0.109 3.891
24 C -0.138 4.138
25 C 0.066 3.934
26 O -0.385 6.385
27 C 0.068 3.932
28 C -0.180 4.180
29 O -0.370 6.370
30 H 0.063 0.937
31 H 0.076 0.924
32 H 0.062 0.938
33 H 0.068 0.932
34 H 0.143 0.857
35 H 0.110 0.890
36 H 0.095 0.905
37 H 0.097 0.903
38 H 0.284 0.716
39 H 0.130 0.870
40 H 0.098 0.902
41 H 0.068 0.932
42 H 0.087 0.913
43 H 0.083 0.917
44 H 0.058 0.942
45 H 0.092 0.908
46 H 0.054 0.946
47 H 0.093 0.907
48 H 0.082 0.918
49 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.010 -3.202 -13.568 16.599
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.010 3.990
3 H 0.084 0.916
4 C -0.075 4.075
5 N -0.351 5.351
6 C 0.360 3.640
7 O -0.416 6.416
8 C -0.126 4.126
9 C -0.254 4.254
10 C -0.115 4.115
11 C -0.228 4.228
12 C 0.100 3.900
13 C -0.490 4.490
14 H 0.099 0.901
15 C -0.148 4.148
16 N -0.414 5.414
17 Si 0.736 3.264
18 H -0.184 1.184
19 H -0.199 1.199
20 H -0.197 1.197
21 C -0.112 4.112
22 C -0.030 4.030
23 C 0.069 3.931
24 C -0.176 4.176
25 C -0.011 4.011
26 O -0.303 6.303
27 C -0.009 4.009
28 C -0.218 4.218
29 O -0.290 6.290
30 H 0.082 0.918
31 H 0.095 0.905
32 H 0.082 0.918
33 H 0.087 0.913
34 H 0.160 0.840
35 H 0.127 0.873
36 H 0.113 0.887
37 H 0.115 0.885
38 H 0.095 0.905
39 H 0.148 0.852
40 H 0.116 0.884
41 H 0.086 0.914
42 H 0.105 0.895
43 H 0.101 0.899
44 H 0.076 0.924
45 H 0.110 0.890
46 H 0.072 0.928
47 H 0.111 0.889
48 H 0.101 0.899
49 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -8.095 -3.404 -13.902 16.444
hybrid contribution 0.523 0.340 0.860 1.062
sum -7.572 -3.064 -13.043 15.390
Atomic orbital electron populations
1.21709 0.92410 1.02972 1.02757 1.22688 0.95170 0.96033 0.85098
0.91559 1.23612 0.80324 1.02161 1.01386 1.48003 1.06768 1.64354
1.15951 1.18984 0.85609 0.76684 0.82747 1.90716 1.15305 1.55185
1.80356 1.19420 0.95989 1.01353 0.95838 1.20749 0.96237 1.06926
1.01509 1.20483 0.98185 0.97539 0.95338 1.21173 0.98308 1.02035
1.01248 1.17603 0.91056 0.91281 0.90055 1.19623 0.90871 1.10667
1.27848 0.90088 1.25963 0.98518 0.96445 0.93879 1.69778 1.10613
1.26859 1.34113 0.86192 0.79649 0.81353 0.79157 1.18398 1.19860
1.19679 1.21567 0.99344 0.96345 0.93918 1.22113 1.00692 0.96873
0.83320 1.21697 0.81737 0.94825 0.94833 1.22137 1.02248 1.00041
0.93193 1.22492 0.98399 0.82512 0.97677 1.87900 1.75634 1.25790
1.41022 1.22492 0.99118 0.95276 0.83980 1.22730 1.02620 0.96508
0.99893 1.87892 1.19903 1.77348 1.43823 0.91765 0.90472 0.91844
0.91349 0.84018 0.87287 0.88718 0.88512 0.90514 0.85208 0.88396
0.91353 0.89474 0.89883 0.92376 0.88980 0.92783 0.88923 0.89919
0.89917
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.35 9.57 37.16 0.36 -1.00 16
2 C 0.07 0.84 3.03 -26.36 -0.08 0.76 16
3 H 0.07 0.87 6.20 -51.93 -0.32 0.55 16
4 C 0.05 0.67 4.39 -3.31 -0.01 0.66 16
5 N -0.62 -10.48 2.60 -173.16 -0.45 -10.93 16
6 C 0.57 12.33 7.45 -12.31 -0.09 12.23 16
7 O -0.54 -13.48 16.27 5.32 0.09 -13.39 16
8 C -0.12 -2.81 5.53 -105.04 -0.58 -3.39 16
9 C -0.23 -4.70 7.46 -38.92 -0.29 -4.99 16
10 C -0.10 -1.96 10.01 -39.73 -0.40 -2.36 16
11 C -0.21 -4.73 9.78 -38.81 -0.38 -5.11 16
12 C 0.10 2.62 5.54 -106.87 -0.59 2.03 16
13 C -0.46 -11.81 9.06 -37.73 -0.34 -12.15 16
14 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16
15 C 0.07 1.75 5.25 -17.34 -0.09 1.66 16
16 N -0.79 -20.79 10.86 55.55 0.60 -20.18 16
17 Si 0.91 18.52 29.57 -169.99 -5.03 13.50 16
18 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16
19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16
21 C -0.09 -2.36 8.20 -38.44 -0.32 -2.68 16
22 C 0.09 1.38 5.29 -3.58 -0.02 1.36 16
23 C 0.11 1.38 0.68 -90.46 -0.06 1.32 16
24 C -0.14 -1.43 5.15 -26.64 -0.14 -1.57 16
25 C 0.07 0.67 6.70 37.22 0.25 0.92 16
26 O -0.38 -4.77 10.76 -35.23 -0.38 -5.15 16
27 C 0.07 0.80 6.70 37.21 0.25 1.05 16
28 C -0.18 -2.38 4.45 -26.64 -0.12 -2.50 16
29 O -0.37 -4.67 8.86 -35.23 -0.31 -4.98 16
30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.07 0.90 8.12 -51.93 -0.42 0.47 16
34 H 0.14 2.16 3.70 -52.03 -0.19 1.96 16
35 H 0.11 1.86 5.28 -52.49 -0.28 1.58 16
36 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16
37 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16
38 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16
39 H 0.13 3.65 6.17 -52.49 -0.32 3.33 16
40 H 0.10 1.59 7.10 -51.93 -0.37 1.22 16
41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16
43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
44 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16
45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
46 H 0.05 0.62 7.83 -51.92 -0.41 0.21 16
47 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16
48 H 0.08 1.22 6.05 -51.93 -0.31 0.91 16
49 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16
LS Contribution 378.33 15.07 5.70 5.70
Total: -1.00 -29.61 378.33 -9.67 -39.28
By element:
Atomic # 1 Polarization: 17.15 SS G_CDS: -7.23 Total: 9.92 kcal
Atomic # 6 Polarization: -11.10 SS G_CDS: -2.66 Total: -13.75 kcal
Atomic # 7 Polarization: -31.27 SS G_CDS: 0.15 Total: -31.12 kcal
Atomic # 8 Polarization: -22.92 SS G_CDS: -0.60 Total: -23.53 kcal
Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -29.61 -9.67 -39.28 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279288383.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.084 kcal
(2) G-P(sol) polarization free energy of solvation -29.613 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.697 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.362 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds