Wall clock time and date at job start Wed Apr 1 2020 03:06:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08997 * 109.51294 * 2 1
4 4 C 1.53721 * 109.48799 * 120.26046 * 2 1 3
5 5 N 1.47152 * 108.19255 * 172.44914 * 4 2 1
6 6 C 1.34775 * 120.99326 * 129.39815 * 5 4 2
7 7 O 1.21550 * 120.00093 * 176.12551 * 6 5 4
8 8 C 1.47890 * 120.00032 * 356.39911 * 6 5 4
9 9 C 1.39920 * 120.02337 * 33.33345 * 8 6 5
10 10 C 1.38325 * 120.35583 * 179.71927 * 9 8 6
11 11 C 1.37757 * 120.41197 * 0.55766 * 10 9 8
12 12 C 1.40742 * 120.03888 * 359.72355 * 11 10 9
13 13 C 1.41439 * 120.17714 * 180.02562 * 12 11 10
14 14 H 1.08001 * 119.99824 * 330.60126 * 13 12 11
15 15 C 1.39938 * 120.00161 * 150.61037 * 13 12 11
16 16 N 1.30825 * 119.99837 * 349.59258 * 15 13 12
17 17 Si 1.86794 * 119.99947 * 169.60002 * 15 13 12
18 18 H 1.48504 * 109.47474 * 359.97438 * 17 15 13
19 19 H 1.48502 * 109.47042 * 119.99546 * 17 15 13
20 20 H 1.48500 * 109.47259 * 239.99559 * 17 15 13
21 21 C 1.38993 * 120.02532 * 213.61072 * 8 6 5
22 22 C 1.47182 * 118.01590 * 309.11542 * 5 4 2
23 23 C 1.53181 * 108.37257 * 50.65241 * 22 5 4
24 24 C 1.53055 * 109.50148 * 187.69733 * 23 22 5
25 25 C 1.53118 * 109.16057 * 183.31108 * 24 23 22
26 26 O 1.42900 * 109.40672 * 57.45889 * 25 24 23
27 27 C 1.42912 * 114.13909 * 298.81901 * 26 25 24
28 28 C 1.53076 * 109.46414 * 67.97629 * 23 22 5
29 29 O 1.42850 * 109.43864 * 307.86429 * 23 22 5
30 30 H 1.09006 * 109.46899 * 180.11336 * 1 2 3
31 31 H 1.08999 * 109.47301 * 300.11222 * 1 2 3
32 32 H 1.08995 * 109.47186 * 60.11435 * 1 2 3
33 33 H 1.08993 * 109.83113 * 52.75889 * 4 2 1
34 34 H 1.08996 * 109.73702 * 292.08232 * 4 2 1
35 35 H 1.07997 * 119.81844 * 359.97409 * 9 8 6
36 36 H 1.07999 * 119.79639 * 180.28149 * 10 9 8
37 37 H 1.08004 * 119.97787 * 179.69816 * 11 10 9
38 38 H 0.97002 * 120.00078 * 179.97438 * 16 15 13
39 39 H 1.07999 * 120.20147 * 0.02562 * 21 8 6
40 40 H 1.08993 * 109.68518 * 170.37032 * 22 5 4
41 41 H 1.09000 * 109.68257 * 290.93418 * 22 5 4
42 42 H 1.08998 * 109.52344 * 303.21191 * 24 23 22
43 43 H 1.08995 * 109.52551 * 63.40759 * 24 23 22
44 44 H 1.08998 * 109.48269 * 297.47815 * 25 24 23
45 45 H 1.09001 * 109.48415 * 177.43462 * 25 24 23
46 46 H 1.09009 * 109.48365 * 301.22049 * 27 26 25
47 47 H 1.09000 * 109.50110 * 181.18260 * 27 26 25
48 48 H 1.08999 * 109.52274 * 296.63761 * 28 23 22
49 49 H 1.09001 * 109.52275 * 56.82833 * 28 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8941 1.0274 0.0000
4 6 2.0428 -0.7303 1.2517
5 7 3.5025 -0.8742 1.1339
6 6 4.3200 -0.5010 2.1383
7 8 5.5171 -0.6927 2.0507
8 6 3.7599 0.1361 3.3497
9 6 2.4920 -0.2330 3.8123
10 6 1.9639 0.3543 4.9479
11 6 2.6747 1.3172 5.6299
12 6 3.9491 1.7056 5.1762
13 6 4.6817 2.6936 5.8745
14 1 4.1614 3.4678 6.4188
15 6 6.0808 2.6682 5.8600
16 7 6.7111 1.6278 5.3785
17 14 7.0483 4.1196 6.5283
18 1 6.1071 5.1620 7.0108
19 1 7.9056 3.6672 7.6532
20 1 7.9014 4.6837 5.4516
21 6 4.4901 1.1062 4.0262
22 6 4.0428 -1.4438 -0.1111
23 6 3.4303 -0.6872 -1.2938
24 6 3.8230 -1.3789 -2.6015
25 6 3.2766 -0.5705 -3.7814
26 8 3.7818 0.7646 -3.7168
27 6 3.4034 1.4763 -2.5367
28 6 3.9554 0.7507 -1.3066
29 8 2.0076 -0.6762 -1.1658
30 1 -0.3633 -1.0277 0.0020
31 1 -0.3634 0.5156 0.8890
32 1 -0.3633 0.5120 -0.8910
33 1 1.5812 -1.7153 1.3202
34 1 1.8020 -0.1488 2.1416
35 1 1.9244 -0.9835 3.2822
36 1 0.9863 0.0592 5.2995
37 1 2.2535 1.7747 6.5130
38 1 7.6809 1.6103 5.3681
39 1 5.4670 1.3977 3.6699
40 1 5.1269 -1.3322 -0.1257
41 1 3.7810 -2.4999 -0.1756
42 1 4.9092 -1.4363 -2.6712
43 1 3.4020 -2.3841 -2.6225
44 1 2.1878 -0.5498 -3.7348
45 1 3.5919 -1.0336 -4.7165
46 1 2.3162 1.5235 -2.4735
47 1 3.8096 2.4870 -2.5753
48 1 3.6292 1.2656 -0.4030
49 1 5.0446 0.7403 -1.3480
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000279288383.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:06:13
Heat of formation + Delta-G solvation = -103.700812 kcal
Electronic energy + Delta-G solvation = -31981.557581 eV
Core-core repulsion = 27873.232724 eV
Total energy + Delta-G solvation = -4108.324857 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-42.17436 -40.60413 -38.97472 -38.67179 -36.11517 -35.45262 -35.03036 -32.29888
-32.10270 -31.85628 -31.33100 -28.81591 -27.53708 -27.09307 -24.95529 -24.69682
-23.39442 -22.90906 -22.37930 -20.81686 -20.41749 -19.34945 -17.82694 -17.77780
-17.66045 -17.26453 -17.07507 -16.77066 -16.57941 -16.21527 -15.97991 -15.73584
-15.43511 -15.21414 -15.06164 -14.56992 -14.50072 -14.30498 -13.77097 -13.67807
-13.54422 -13.51040 -13.34862 -13.19075 -12.96233 -12.85634 -12.64738 -12.60926
-12.54021 -12.43667 -12.12886 -12.00451 -11.96511 -11.65317 -11.40844 -11.38674
-11.14647 -10.99215 -10.72360 -10.51604 -9.67522 -9.39057 -9.33276 -8.62396
-6.42973 0.40467 0.95994 1.35338 1.43226 1.51063 1.77697 1.96455
2.18029 2.51080 2.73159 2.89959 3.42595 3.50636 3.60643 3.63049
3.72841 3.80147 3.94698 4.03252 4.17663 4.23979 4.31807 4.35893
4.42929 4.51241 4.52430 4.53300 4.55713 4.61923 4.70858 4.74769
4.79225 4.85115 4.87726 4.94907 5.00479 5.06037 5.07554 5.15514
5.16289 5.27574 5.33510 5.40559 5.50191 5.79520 5.89743 6.01754
6.12575 6.19813 6.22539 6.29983 6.58078 6.86979 6.91747 7.12132
8.32768
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.013950 B = 0.003348 C = 0.003027
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2006.632638 B = 8361.871079 C = 9249.355516
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.070 3.930
3 H 0.054 0.946
4 C 0.042 3.958
5 N -0.605 5.605
6 C 0.562 3.438
7 O -0.587 6.587
8 C -0.134 4.134
9 C -0.209 4.209
10 C -0.092 4.092
11 C -0.210 4.210
12 C 0.071 3.929
13 C -0.496 4.496
14 H 0.085 0.915
15 C 0.026 3.974
16 N -0.835 5.835
17 Si 0.984 3.016
18 H -0.249 1.249
19 H -0.267 1.267
20 H -0.271 1.271
21 C -0.126 4.126
22 C 0.089 3.911
23 C 0.115 3.885
24 C -0.135 4.135
25 C 0.064 3.936
26 O -0.399 6.399
27 C 0.074 3.926
28 C -0.179 4.179
29 O -0.363 6.363
30 H 0.075 0.925
31 H 0.088 0.912
32 H 0.071 0.929
33 H 0.094 0.906
34 H 0.133 0.867
35 H 0.150 0.850
36 H 0.144 0.856
37 H 0.111 0.889
38 H 0.284 0.716
39 H 0.092 0.908
40 H 0.076 0.924
41 H 0.088 0.912
42 H 0.087 0.913
43 H 0.103 0.897
44 H 0.062 0.938
45 H 0.116 0.884
46 H 0.061 0.939
47 H 0.098 0.902
48 H 0.061 0.939
49 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.326 -4.217 -14.724 19.660
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.011 3.989
3 H 0.072 0.928
4 C -0.079 4.079
5 N -0.337 5.337
6 C 0.353 3.647
7 O -0.468 6.468
8 C -0.137 4.137
9 C -0.228 4.228
10 C -0.110 4.110
11 C -0.230 4.230
12 C 0.069 3.931
13 C -0.526 4.526
14 H 0.103 0.897
15 C -0.188 4.188
16 N -0.462 5.462
17 Si 0.805 3.195
18 H -0.172 1.172
19 H -0.192 1.192
20 H -0.196 1.196
21 C -0.146 4.146
22 C -0.034 4.034
23 C 0.075 3.925
24 C -0.173 4.173
25 C -0.012 4.012
26 O -0.318 6.318
27 C -0.003 4.003
28 C -0.217 4.217
29 O -0.283 6.283
30 H 0.094 0.906
31 H 0.107 0.893
32 H 0.090 0.910
33 H 0.112 0.888
34 H 0.151 0.849
35 H 0.167 0.833
36 H 0.161 0.839
37 H 0.129 0.871
38 H 0.094 0.906
39 H 0.110 0.890
40 H 0.094 0.906
41 H 0.107 0.893
42 H 0.106 0.894
43 H 0.121 0.879
44 H 0.080 0.920
45 H 0.134 0.866
46 H 0.079 0.921
47 H 0.116 0.884
48 H 0.080 0.920
49 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -11.482 -4.430 -15.089 19.471
hybrid contribution 1.361 0.517 1.110 1.831
sum -10.122 -3.912 -13.979 17.696
Atomic orbital electron populations
1.21715 0.89644 1.04039 1.03819 1.22736 0.97124 0.94963 0.84041
0.92843 1.23804 0.78260 1.03594 1.02211 1.47996 1.07809 1.62557
1.15364 1.18931 0.85361 0.76802 0.83577 1.90684 1.17340 1.57384
1.81400 1.19678 0.97022 1.00680 0.96307 1.21243 0.94669 1.06113
1.00815 1.20971 0.99720 0.95875 0.94426 1.21482 0.97285 1.02417
1.01829 1.17929 0.92673 0.92168 0.90339 1.19897 0.91812 1.11667
1.29244 0.89725 1.26850 0.99309 0.98833 0.93772 1.69908 1.10696
1.29139 1.36434 0.85121 0.78089 0.77899 0.78397 1.17248 1.19192
1.19641 1.21327 0.98857 0.98954 0.95486 1.22331 0.99769 0.98228
0.83040 1.21670 0.81781 0.94055 0.95019 1.22172 1.02505 1.00837
0.91757 1.22681 0.98602 0.81431 0.98529 1.87892 1.76039 1.27008
1.40842 1.22444 0.99346 0.95348 0.83130 1.22689 1.01647 0.97412
0.99912 1.87918 1.19398 1.77191 1.43771 0.90639 0.89349 0.90958
0.88816 0.84937 0.83293 0.83879 0.87111 0.90590 0.89013 0.90562
0.89340 0.89441 0.87883 0.91992 0.86572 0.92064 0.88408 0.92017
0.91611
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.05 9.57 71.98 0.69 -1.36 16
2 C 0.07 1.53 3.03 30.84 0.09 1.62 16
3 H 0.05 1.34 6.20 -2.39 -0.01 1.33 16
4 C 0.04 1.09 4.39 86.50 0.38 1.46 16
5 N -0.61 -20.28 2.60 -820.04 -2.13 -22.41 16
6 C 0.56 25.21 7.45 86.80 0.65 25.86 16
7 O -0.59 -31.33 16.27 -3.87 -0.06 -31.39 16
8 C -0.13 -6.25 5.53 -20.13 -0.11 -6.37 16
9 C -0.21 -7.93 7.46 22.70 0.17 -7.76 16
10 C -0.09 -3.43 10.01 22.18 0.22 -3.21 16
11 C -0.21 -9.44 9.78 22.77 0.22 -9.22 16
12 C 0.07 3.78 5.54 -21.32 -0.12 3.66 16
13 C -0.50 -26.67 9.06 23.47 0.21 -26.46 16
14 H 0.08 4.27 7.87 -2.91 -0.02 4.25 16
15 C 0.03 1.35 5.25 85.25 0.45 1.79 16
16 N -0.84 -47.26 10.86 21.82 0.24 -47.03 16
17 Si 0.98 39.69 29.57 68.60 2.03 41.71 16
18 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16
19 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16
20 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16
21 C -0.13 -6.89 8.20 23.01 0.19 -6.70 16
22 C 0.09 2.58 5.29 86.31 0.46 3.03 16
23 C 0.12 2.76 0.68 -10.69 -0.01 2.75 16
24 C -0.13 -2.49 5.15 30.65 0.16 -2.33 16
25 C 0.06 1.12 6.70 72.02 0.48 1.60 16
26 O -0.40 -9.26 10.76 -148.98 -1.60 -10.86 16
27 C 0.07 1.69 6.70 72.02 0.48 2.17 16
28 C -0.18 -4.80 4.45 30.66 0.14 -4.66 16
29 O -0.36 -8.15 8.86 -148.98 -1.32 -9.47 16
30 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16
31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
33 H 0.09 2.02 8.12 -2.39 -0.02 2.00 16
34 H 0.13 3.64 3.70 -2.48 -0.01 3.63 16
35 H 0.15 4.44 5.28 -2.91 -0.02 4.43 16
36 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16
37 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16
38 H 0.28 14.89 8.30 -92.71 -0.77 14.12 16
39 H 0.09 5.67 6.17 -2.91 -0.02 5.66 16
40 H 0.08 2.57 7.10 -2.39 -0.02 2.56 16
41 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16
42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16
44 H 0.06 1.06 7.83 -2.39 -0.02 1.04 16
45 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16
46 H 0.06 1.31 7.83 -2.38 -0.02 1.29 16
47 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16
48 H 0.06 1.90 6.05 -2.39 -0.01 1.89 16
49 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
Total: -1.00 -70.24 378.33 2.86 -67.38
By element:
Atomic # 1 Polarization: 35.21 SS G_CDS: 0.96 Total: 36.17 kcal
Atomic # 6 Polarization: -28.86 SS G_CDS: 4.75 Total: -24.11 kcal
Atomic # 7 Polarization: -67.54 SS G_CDS: -1.90 Total: -69.44 kcal
Atomic # 8 Polarization: -48.74 SS G_CDS: -2.99 Total: -51.72 kcal
Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.71 kcal
Total: -70.24 2.86 -67.38 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279288383.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.316 kcal
(2) G-P(sol) polarization free energy of solvation -70.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.385 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.701 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds